Wall clock time and date at job start Mon Mar 30 2020 02:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47608 * 2 1 4 4 C 1.38230 * 120.00561 * 269.73030 * 3 2 1 5 5 C 1.38229 * 120.00267 * 179.76594 * 4 3 2 6 6 C 1.38238 * 119.99912 * 0.49996 * 5 4 3 7 7 C 1.50697 * 119.99711 * 179.72745 * 6 5 4 8 8 H 1.09003 * 109.47135 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47408 * 60.02703 * 7 6 5 10 10 C 1.50705 * 109.47205 * 300.02168 * 7 6 5 11 11 O 1.21287 * 119.99878 * 18.57456 * 10 7 6 12 12 N 1.34773 * 119.99868 * 198.56875 * 10 7 6 13 13 C 1.37099 * 120.00366 * 3.91403 * 12 10 7 14 14 H 1.08002 * 119.99675 * 12.07916 * 13 12 10 15 15 C 1.38953 * 120.00356 * 192.08599 * 13 12 10 16 16 N 1.31405 * 120.00119 * 28.44224 * 15 13 12 17 17 Si 1.86802 * 119.99899 * 208.45031 * 15 13 12 18 18 H 1.48507 * 109.47008 * 94.97297 * 17 15 13 19 19 H 1.48495 * 109.46856 * 214.97061 * 17 15 13 20 20 H 1.48497 * 109.47163 * 334.97099 * 17 15 13 21 21 C 1.46501 * 120.00165 * 183.91375 * 12 10 7 22 22 C 1.52998 * 109.47326 * 84.10998 * 21 12 10 23 23 C 1.38235 * 119.99942 * 359.75298 * 6 5 4 24 24 C 1.38232 * 120.00128 * 359.97438 * 23 6 5 25 25 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46788 * 300.00253 * 1 2 3 27 27 H 1.09005 * 109.46799 * 59.99337 * 1 2 3 28 28 H 1.09003 * 109.47256 * 120.00419 * 2 1 3 29 29 H 1.09001 * 109.47178 * 240.00113 * 2 1 3 30 30 H 1.08003 * 119.99427 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00031 * 180.23541 * 5 4 3 32 32 H 1.08999 * 109.47629 * 54.53132 * 9 7 6 33 33 H 1.09003 * 109.47557 * 174.53359 * 9 7 6 34 34 H 1.09004 * 109.47318 * 294.53194 * 9 7 6 35 35 H 0.97000 * 120.00712 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.47579 * 204.11587 * 21 12 10 37 37 H 1.09007 * 109.46912 * 324.11271 * 21 12 10 38 38 H 1.08998 * 109.47133 * 60.00340 * 22 21 12 39 39 H 1.08996 * 109.47266 * 180.02562 * 22 21 12 40 40 H 1.08999 * 109.47273 * 300.00776 * 22 21 12 41 41 H 1.07999 * 120.00052 * 179.97438 * 23 6 5 42 42 H 1.07996 * 120.00528 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1970 5 6 2.7245 3.3754 -1.1970 6 6 2.9548 4.0270 0.0002 7 6 3.4581 5.4475 0.0002 8 1 3.5795 5.7900 1.0279 9 6 2.4509 6.3454 -0.7209 10 6 4.7857 5.5101 -0.7102 11 8 5.1197 4.6103 -1.4518 12 7 5.6018 6.5659 -0.5215 13 6 5.2612 7.5437 0.3771 14 1 4.4498 7.3805 1.0710 15 6 5.9598 8.7447 0.3951 16 7 6.5188 9.1962 -0.7050 17 14 6.1043 9.7174 1.9834 18 1 7.3805 9.3729 2.6603 19 1 6.0827 11.1704 1.6776 20 1 4.9649 9.3820 2.8746 21 6 6.8529 6.6689 -1.2767 22 6 6.5726 7.2921 -2.6456 23 6 2.7240 3.3755 1.1973 24 6 2.2624 2.0725 1.1973 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0927 1.5599 -2.1323 31 1 2.9051 3.8844 -2.1323 32 1 1.4673 6.2261 -0.2668 33 1 2.7661 7.3855 -0.6369 34 1 2.4018 6.0646 -1.7730 35 1 7.0068 10.0345 -0.6925 36 1 7.5572 7.2956 -0.7296 37 1 7.2794 5.6747 -1.4106 38 1 6.1462 8.2862 -2.5118 39 1 7.5034 7.3682 -3.2077 40 1 5.8684 6.6654 -3.1928 41 1 2.9044 3.8844 2.1327 42 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067991218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:17 Heat of formation + Delta-G solvation = -18.970997 kcal Electronic energy + Delta-G solvation = -21610.882994 eV Core-core repulsion = 18555.586581 eV Total energy + Delta-G solvation = -3055.296413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.58098 -38.26311 -35.26205 -34.35741 -32.24045 -31.55330 -30.47879 -29.60158 -28.04139 -24.90373 -24.31089 -23.08955 -22.27951 -21.47567 -20.09765 -18.93361 -16.87514 -16.30458 -15.59917 -15.04138 -14.82446 -14.35186 -14.16093 -13.83120 -13.56756 -13.45057 -13.14056 -12.98865 -12.68032 -12.30707 -12.26605 -11.97523 -11.77887 -11.46841 -11.27143 -11.17973 -11.08999 -11.00904 -10.77896 -10.73378 -10.45821 -10.37275 -10.26993 -10.16017 -9.56985 -8.95963 -8.52579 -8.23985 -7.98471 -7.78322 -6.41567 -3.86853 1.77698 1.89312 3.08643 3.21234 3.22266 3.91076 4.05150 4.19630 4.83807 4.92704 4.97253 5.01607 5.33647 5.36172 5.40295 5.46239 5.62798 5.76877 5.83549 5.92118 5.92528 6.06089 6.06780 6.15980 6.17173 6.38190 6.44575 6.53005 6.59290 6.63804 6.74332 6.77166 6.84320 6.92365 6.99925 7.01949 7.24656 7.33324 7.33877 7.48678 7.74159 7.84486 8.43323 9.07337 9.55208 9.96540 10.56364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.004582 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.986463 B = 6108.746112 C = 6665.278528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.096 4.096 4 C -0.126 4.126 5 C -0.071 4.071 6 C -0.057 4.057 7 C -0.059 4.059 8 H 0.091 0.909 9 C -0.129 4.129 10 C 0.461 3.539 11 O -0.604 6.604 12 N -0.437 5.437 13 C -0.342 4.342 14 H 0.101 0.899 15 C 0.042 3.958 16 N -0.848 5.848 17 Si 0.908 3.092 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.140 3.860 22 C -0.150 4.150 23 C -0.116 4.116 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.117 0.883 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 -8.614 2.293 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.144 4.144 5 C -0.089 4.089 6 C -0.057 4.057 7 C -0.080 4.080 8 H 0.109 0.891 9 C -0.187 4.187 10 C 0.249 3.751 11 O -0.491 6.491 12 N -0.154 5.154 13 C -0.469 4.469 14 H 0.118 0.882 15 C -0.164 4.164 16 N -0.485 5.485 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.194 1.194 21 C 0.016 3.984 22 C -0.208 4.208 23 C -0.134 4.134 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.135 0.865 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.897 -8.846 1.859 12.003 hybrid contribution 0.302 0.738 0.823 1.146 sum -7.595 -8.109 2.682 11.429 Atomic orbital electron populations 1.21741 0.95159 1.01145 1.02178 1.20479 0.95817 0.93247 1.02311 1.19743 1.00667 0.95841 0.93398 1.20935 1.01289 0.95188 0.97003 1.20989 0.95573 0.94093 0.98260 1.19659 0.97423 0.95543 0.93072 1.20056 0.94601 0.91765 1.01554 0.89109 1.21606 0.96932 1.00461 0.99658 1.19807 0.85874 0.84164 0.85232 1.90523 1.75900 1.39980 1.42651 1.43772 1.17125 1.18844 1.35691 1.19635 1.20026 0.94915 1.12317 0.88186 1.25145 0.97376 0.96459 0.97394 1.70107 1.33597 1.20020 1.24761 0.86220 0.79041 0.78534 0.82745 1.20408 1.21081 1.19376 1.20997 0.86826 0.97634 0.92902 1.22140 0.99237 1.03859 0.95610 1.21009 1.00152 0.94811 0.97462 1.20813 1.01744 0.94934 0.97004 0.92856 0.92665 0.92618 0.91507 0.91438 0.86862 0.85959 0.93040 0.90610 0.93006 0.92132 0.90266 0.94310 0.88249 0.95054 0.95535 0.86488 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.08 -0.90 6.06 -27.88 -0.17 -1.07 16 3 C -0.10 -1.40 5.13 -104.62 -0.54 -1.93 16 4 C -0.13 -2.01 9.70 -39.59 -0.38 -2.39 16 5 C -0.07 -1.31 7.90 -39.58 -0.31 -1.62 16 6 C -0.06 -1.06 4.59 -104.62 -0.48 -1.54 16 7 C -0.06 -1.18 2.09 -92.93 -0.19 -1.37 16 8 H 0.09 1.78 6.26 -51.93 -0.33 1.46 16 9 C -0.13 -2.35 8.82 37.15 0.33 -2.03 16 10 C 0.46 11.14 6.73 -10.98 -0.07 11.07 16 11 O -0.60 -15.91 14.26 5.55 0.08 -15.83 16 12 N -0.44 -10.91 2.64 -114.81 -0.30 -11.22 16 13 C -0.34 -8.37 8.34 -14.93 -0.12 -8.50 16 14 H 0.10 2.33 6.05 -52.49 -0.32 2.01 16 15 C 0.04 1.02 4.73 -17.47 -0.08 0.93 16 16 N -0.85 -21.00 8.75 55.50 0.49 -20.52 16 17 Si 0.91 18.84 29.64 -169.99 -5.04 13.80 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 C 0.14 3.43 5.28 -4.04 -0.02 3.41 16 22 C -0.15 -3.51 9.72 37.16 0.36 -3.15 16 23 C -0.12 -1.93 9.67 -39.58 -0.38 -2.31 16 24 C -0.13 -1.88 9.70 -39.58 -0.38 -2.26 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.12 2.39 7.12 -52.49 -0.37 2.01 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.47 7.38 -51.93 -0.38 1.09 16 34 H 0.05 0.95 7.59 -51.93 -0.39 0.56 16 35 H 0.27 6.31 8.31 -40.82 -0.34 5.98 16 36 H 0.08 1.99 6.26 -51.93 -0.33 1.67 16 37 H 0.04 0.96 7.55 -51.92 -0.39 0.56 16 38 H 0.10 2.48 5.88 -51.93 -0.31 2.18 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.12 1.75 7.95 -52.49 -0.42 1.33 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -27.63 336.48 -8.39 -36.01 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.59 Total: 6.49 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.09 Total: -13.80 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.18 Total: -31.73 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.83 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.04 Total: 13.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.63 -8.39 -36.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds