Wall clock time and date at job start Mon Mar 30 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47608 * 2 1 4 4 C 1.38230 * 120.00561 * 269.73030 * 3 2 1 5 5 C 1.38229 * 120.00267 * 179.76594 * 4 3 2 6 6 C 1.38238 * 119.99912 * 0.49996 * 5 4 3 7 7 C 1.50697 * 119.99711 * 179.72745 * 6 5 4 8 8 H 1.09003 * 109.47135 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47408 * 60.02703 * 7 6 5 10 10 C 1.50705 * 109.47205 * 300.02168 * 7 6 5 11 11 O 1.21287 * 119.99878 * 18.57456 * 10 7 6 12 12 N 1.34773 * 119.99868 * 198.56875 * 10 7 6 13 13 C 1.37099 * 120.00366 * 3.91403 * 12 10 7 14 14 H 1.08002 * 119.99675 * 12.07916 * 13 12 10 15 15 C 1.38953 * 120.00356 * 192.08599 * 13 12 10 16 16 N 1.31405 * 120.00119 * 28.44224 * 15 13 12 17 17 Si 1.86802 * 119.99899 * 208.45031 * 15 13 12 18 18 H 1.48507 * 109.47008 * 94.97297 * 17 15 13 19 19 H 1.48495 * 109.46856 * 214.97061 * 17 15 13 20 20 H 1.48497 * 109.47163 * 334.97099 * 17 15 13 21 21 C 1.46501 * 120.00165 * 183.91375 * 12 10 7 22 22 C 1.52998 * 109.47326 * 84.10998 * 21 12 10 23 23 C 1.38235 * 119.99942 * 359.75298 * 6 5 4 24 24 C 1.38232 * 120.00128 * 359.97438 * 23 6 5 25 25 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46788 * 300.00253 * 1 2 3 27 27 H 1.09005 * 109.46799 * 59.99337 * 1 2 3 28 28 H 1.09003 * 109.47256 * 120.00419 * 2 1 3 29 29 H 1.09001 * 109.47178 * 240.00113 * 2 1 3 30 30 H 1.08003 * 119.99427 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00031 * 180.23541 * 5 4 3 32 32 H 1.08999 * 109.47629 * 54.53132 * 9 7 6 33 33 H 1.09003 * 109.47557 * 174.53359 * 9 7 6 34 34 H 1.09004 * 109.47318 * 294.53194 * 9 7 6 35 35 H 0.97000 * 120.00712 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.47579 * 204.11587 * 21 12 10 37 37 H 1.09007 * 109.46912 * 324.11271 * 21 12 10 38 38 H 1.08998 * 109.47133 * 60.00340 * 22 21 12 39 39 H 1.08996 * 109.47266 * 180.02562 * 22 21 12 40 40 H 1.08999 * 109.47273 * 300.00776 * 22 21 12 41 41 H 1.07999 * 120.00052 * 179.97438 * 23 6 5 42 42 H 1.07996 * 120.00528 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1970 5 6 2.7245 3.3754 -1.1970 6 6 2.9548 4.0270 0.0002 7 6 3.4581 5.4475 0.0002 8 1 3.5795 5.7900 1.0279 9 6 2.4509 6.3454 -0.7209 10 6 4.7857 5.5101 -0.7102 11 8 5.1197 4.6103 -1.4518 12 7 5.6018 6.5659 -0.5215 13 6 5.2612 7.5437 0.3771 14 1 4.4498 7.3805 1.0710 15 6 5.9598 8.7447 0.3951 16 7 6.5188 9.1962 -0.7050 17 14 6.1043 9.7174 1.9834 18 1 7.3805 9.3729 2.6603 19 1 6.0827 11.1704 1.6776 20 1 4.9649 9.3820 2.8746 21 6 6.8529 6.6689 -1.2767 22 6 6.5726 7.2921 -2.6456 23 6 2.7240 3.3755 1.1973 24 6 2.2624 2.0725 1.1973 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0927 1.5599 -2.1323 31 1 2.9051 3.8844 -2.1323 32 1 1.4673 6.2261 -0.2668 33 1 2.7661 7.3855 -0.6369 34 1 2.4018 6.0646 -1.7730 35 1 7.0068 10.0345 -0.6925 36 1 7.5572 7.2956 -0.7296 37 1 7.2794 5.6747 -1.4106 38 1 6.1462 8.2862 -2.5118 39 1 7.5034 7.3682 -3.2077 40 1 5.8684 6.6654 -3.1928 41 1 2.9044 3.8844 2.1327 42 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067991218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:16 Heat of formation + Delta-G solvation = -30.920253 kcal Electronic energy + Delta-G solvation = -21611.401153 eV Core-core repulsion = 18555.586581 eV Total energy + Delta-G solvation = -3055.814571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12528 -39.81925 -37.02336 -35.78602 -33.61024 -33.38398 -31.74115 -31.40385 -29.27403 -26.77596 -25.72268 -24.56090 -23.54939 -22.97487 -21.45952 -20.72646 -18.62321 -18.05339 -16.94427 -16.38128 -16.31052 -15.99559 -15.91638 -15.41296 -14.82417 -14.66411 -14.49836 -14.36580 -14.22351 -13.92788 -13.74209 -13.46198 -13.24269 -12.89177 -12.86799 -12.73145 -12.63820 -12.39701 -12.22042 -12.16864 -12.05243 -11.90297 -11.59453 -11.55641 -11.44373 -10.86877 -10.19009 -9.72098 -9.66729 -9.30042 -8.27075 -5.78765 0.51311 0.62731 1.42599 1.51993 1.61101 2.06822 2.32342 2.83050 3.10585 3.15941 3.84188 3.96612 4.03833 4.21364 4.22966 4.34247 4.45504 4.49518 4.58465 4.59798 4.68111 4.75948 4.76821 4.79929 4.90098 4.96402 5.03126 5.09592 5.12354 5.13537 5.22773 5.28468 5.33216 5.35369 5.43458 5.48116 5.63269 5.79797 5.85208 5.88260 5.90355 6.23443 6.52671 7.18086 7.65607 8.07339 8.71690 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.004582 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.986463 B = 6108.746112 C = 6665.278528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.091 4.091 6 C -0.083 4.083 7 C -0.050 4.050 8 H 0.094 0.906 9 C -0.119 4.119 10 C 0.448 3.552 11 O -0.634 6.634 12 N -0.448 5.448 13 C -0.361 4.361 14 H 0.109 0.891 15 C 0.006 3.994 16 N -0.870 5.870 17 Si 0.976 3.024 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.259 1.259 21 C 0.140 3.860 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.125 4.125 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.271 0.729 36 H 0.072 0.928 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.012 0.988 41 H 0.131 0.869 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -9.670 4.100 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.152 4.152 5 C -0.110 4.110 6 C -0.083 4.083 7 C -0.071 4.071 8 H 0.112 0.888 9 C -0.176 4.176 10 C 0.238 3.762 11 O -0.522 6.522 12 N -0.165 5.165 13 C -0.488 4.488 14 H 0.127 0.873 15 C -0.198 4.198 16 N -0.507 5.507 17 Si 0.800 3.200 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.183 1.183 21 C 0.017 3.983 22 C -0.193 4.193 23 C -0.141 4.141 24 C -0.143 4.143 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.149 0.851 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.117 -9.897 3.667 13.947 hybrid contribution 0.687 1.005 0.211 1.235 sum -8.430 -8.892 3.878 12.853 Atomic orbital electron populations 1.21719 0.93882 1.02431 1.01897 1.20561 0.96790 0.90917 1.03473 1.20174 0.98911 0.97391 0.92619 1.21161 1.00998 0.94321 0.98670 1.20914 0.97316 0.95417 0.97331 1.19640 0.99407 0.95081 0.94174 1.19978 0.92585 0.93526 1.01030 0.88752 1.21522 0.97922 0.98999 0.99201 1.20574 0.87028 0.83452 0.85141 1.90484 1.76820 1.40953 1.43989 1.44008 1.17231 1.19329 1.35929 1.19937 1.20984 0.95178 1.12672 0.87312 1.25923 0.96784 0.97181 0.99928 1.70181 1.33857 1.20481 1.26211 0.85181 0.78928 0.76886 0.78984 1.20673 1.21031 1.18289 1.20942 0.87083 0.96877 0.93407 1.21971 0.99811 1.02405 0.95144 1.21236 1.00038 0.95731 0.97116 1.21195 1.00368 0.94217 0.98495 0.90827 0.92642 0.93253 0.89940 0.90762 0.85269 0.88401 0.90193 0.92102 0.94014 0.91884 0.90990 0.95223 0.89633 0.92917 0.96853 0.85076 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 71.98 0.71 -1.57 16 2 C -0.08 -1.52 6.06 29.85 0.18 -1.34 16 3 C -0.09 -2.42 5.13 -19.86 -0.10 -2.52 16 4 C -0.13 -4.15 9.70 22.27 0.22 -3.93 16 5 C -0.09 -3.44 7.90 22.27 0.18 -3.27 16 6 C -0.08 -3.11 4.59 -19.87 -0.09 -3.20 16 7 C -0.05 -2.04 2.09 -12.29 -0.03 -2.07 16 8 H 0.09 3.70 6.26 -2.39 -0.01 3.69 16 9 C -0.12 -4.39 8.82 71.98 0.63 -3.76 16 10 C 0.45 22.32 6.73 87.66 0.59 22.91 16 11 O -0.63 -34.69 14.26 -3.05 -0.04 -34.73 16 12 N -0.45 -22.90 2.64 -635.53 -1.68 -24.58 16 13 C -0.36 -17.79 8.34 84.04 0.70 -17.09 16 14 H 0.11 5.05 6.05 -2.91 -0.02 5.03 16 15 C 0.01 0.28 4.73 84.93 0.40 0.68 16 16 N -0.87 -43.30 8.75 21.66 0.19 -43.11 16 17 Si 0.98 38.15 29.64 68.60 2.03 40.18 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 21 C 0.14 7.08 5.28 86.38 0.46 7.54 16 22 C -0.14 -6.46 9.72 71.98 0.70 -5.76 16 23 C -0.12 -3.91 9.67 22.27 0.22 -3.70 16 24 C -0.13 -3.36 9.70 22.27 0.22 -3.15 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 28 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.10 4.05 7.12 -2.91 -0.02 4.03 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.40 7.38 -2.39 -0.02 2.38 16 34 H 0.04 1.59 7.59 -2.39 -0.02 1.57 16 35 H 0.27 12.75 8.31 -92.71 -0.77 11.97 16 36 H 0.07 3.70 6.26 -2.39 -0.01 3.68 16 37 H 0.03 1.51 7.55 -2.38 -0.02 1.49 16 38 H 0.09 4.36 5.88 -2.39 -0.01 4.35 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.13 3.68 7.95 -2.91 -0.02 3.65 16 42 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -59.88 336.48 6.47 -53.41 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.99 Total: 29.05 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.98 Total: -20.22 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -1.49 Total: -67.69 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.04 Total: -34.73 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -59.88 6.47 -53.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.491 kcal (2) G-P(sol) polarization free energy of solvation -59.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds