Wall clock time and date at job start Mon Mar 30 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47101 * 2 1 4 4 C 1.38231 * 119.99857 * 89.99997 * 3 2 1 5 5 C 1.38239 * 119.99903 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99776 * 359.95903 * 5 4 3 7 7 C 1.50695 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47484 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.47172 * 119.99907 * 7 6 5 10 10 C 1.50700 * 109.47524 * 240.00398 * 7 6 5 11 11 O 1.21285 * 119.99858 * 346.33583 * 10 7 6 12 12 N 1.34773 * 120.00076 * 166.33276 * 10 7 6 13 13 C 1.46492 * 120.00253 * 4.99804 * 12 10 7 14 14 C 1.46504 * 119.99832 * 184.99660 * 12 10 7 15 15 C 1.50697 * 109.47593 * 270.00309 * 14 12 10 16 16 H 1.08006 * 119.99501 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00552 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00510 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99514 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46953 * 90.00181 * 19 17 15 21 21 H 1.48498 * 109.47089 * 209.99910 * 19 17 15 22 22 H 1.48504 * 109.47473 * 330.00295 * 19 17 15 23 23 C 1.38238 * 120.00042 * 0.27913 * 6 5 4 24 24 C 1.38234 * 119.99864 * 359.53029 * 23 6 5 25 25 H 1.09001 * 109.47065 * 299.99742 * 1 2 3 26 26 H 1.09000 * 109.47227 * 59.99928 * 1 2 3 27 27 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47065 * 240.00258 * 2 1 3 29 29 H 1.09000 * 109.47227 * 120.00072 * 2 1 3 30 30 H 1.08001 * 119.99902 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.99877 * 179.97438 * 5 4 3 32 32 H 1.09010 * 109.46524 * 50.23004 * 9 7 6 33 33 H 1.09006 * 109.47131 * 170.22034 * 9 7 6 34 34 H 1.08998 * 109.47796 * 290.22902 * 9 7 6 35 35 H 1.08997 * 109.47320 * 267.18748 * 13 12 10 36 36 H 1.09000 * 109.47180 * 27.19460 * 13 12 10 37 37 H 1.09006 * 109.46941 * 147.18690 * 13 12 10 38 38 H 1.09007 * 109.47308 * 30.00679 * 14 12 10 39 39 H 1.09001 * 109.46883 * 149.99714 * 14 12 10 40 40 H 0.96997 * 120.00034 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99682 * 179.73096 * 23 6 5 42 42 H 1.07998 * 119.99989 * 180.22003 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9536 4.0275 0.0000 7 6 3.4549 5.4486 -0.0001 8 1 3.5755 5.7915 1.0276 9 6 4.8031 5.5139 -0.7204 10 6 2.4620 6.3315 -0.7113 11 8 1.5818 5.8360 -1.3826 12 7 2.5522 7.6717 -0.6013 13 6 3.6774 8.2736 0.1181 14 6 1.5248 8.5267 -1.2012 15 6 1.9186 8.8688 -2.6150 16 1 2.8417 8.4871 -3.0258 17 6 1.1006 9.6689 -3.3842 18 7 1.4441 9.9670 -4.6182 19 14 -0.4962 10.3284 -2.6739 20 1 -0.2442 11.6389 -2.0224 21 1 -1.4892 10.5008 -3.7646 22 1 -1.0247 9.3700 -1.6702 23 6 2.7186 3.3775 -1.1972 24 6 2.2620 2.0727 -1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0831 1.5632 2.1324 31 1 2.9025 3.8852 2.1324 32 1 4.7240 5.0129 -1.6853 33 1 5.0828 6.5562 -0.8741 34 1 5.5628 5.0193 -0.1153 35 1 3.3990 8.4335 1.1597 36 1 4.5380 7.6063 0.0703 37 1 3.9326 9.2290 -0.3406 38 1 0.5710 7.9990 -1.2073 39 1 1.4292 9.4431 -0.6188 40 1 0.8684 10.5296 -5.1594 41 1 2.8947 3.8880 -2.1325 42 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068112394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:21 Heat of formation + Delta-G solvation = -17.776668 kcal Electronic energy + Delta-G solvation = -21241.319110 eV Core-core repulsion = 18186.074487 eV Total energy + Delta-G solvation = -3055.244623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02651 -38.60472 -35.12059 -34.76122 -32.84823 -32.14105 -30.73543 -28.85840 -27.99398 -26.14124 -24.58750 -23.32842 -22.57115 -21.80571 -20.34693 -18.41759 -16.94233 -16.53387 -16.16798 -15.48084 -15.20808 -14.69951 -14.56974 -14.03192 -13.91350 -13.61747 -13.40800 -13.22111 -12.99837 -12.83666 -12.39150 -12.27926 -12.12393 -11.87437 -11.63264 -11.57211 -11.44757 -11.19582 -11.10939 -10.85080 -10.65041 -10.59471 -10.47707 -10.08725 -9.52235 -8.95623 -8.62738 -8.57952 -8.32564 -7.66527 -6.07290 -4.05545 1.48966 1.63950 3.27554 3.35899 3.37041 3.40649 3.76067 4.08377 4.41090 4.70854 4.81619 4.89605 4.99224 5.16405 5.22340 5.27878 5.29856 5.37182 5.40682 5.50219 5.53047 5.66135 5.67804 5.78010 5.84568 5.87259 5.90646 5.99260 6.10225 6.14560 6.21803 6.27703 6.37140 6.60049 6.68280 6.77424 6.87545 6.98722 7.20726 7.36748 7.63071 8.28106 8.48822 8.95022 9.02297 9.53362 11.06202 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021621 B = 0.004406 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.714713 B = 6354.010534 C = 6966.574654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.088 4.088 4 C -0.126 4.126 5 C -0.112 4.112 6 C -0.067 4.067 7 C -0.072 4.072 8 H 0.094 0.906 9 C -0.146 4.146 10 C 0.511 3.489 11 O -0.529 6.529 12 N -0.598 5.598 13 C 0.070 3.930 14 C 0.216 3.784 15 C -0.526 4.526 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.264 1.264 23 C -0.072 4.072 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -14.775 13.235 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.144 4.144 5 C -0.130 4.130 6 C -0.068 4.068 7 C -0.094 4.094 8 H 0.112 0.888 9 C -0.203 4.203 10 C 0.297 3.703 11 O -0.406 6.406 12 N -0.330 5.330 13 C -0.073 4.073 14 C 0.096 3.904 15 C -0.564 4.564 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.189 1.189 23 C -0.090 4.090 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.493 -14.908 12.708 20.098 hybrid contribution -0.834 0.680 0.228 1.100 sum 3.659 -14.228 12.936 19.575 Atomic orbital electron populations 1.21753 0.94879 1.01341 1.02492 1.20505 0.96116 0.92926 1.02385 1.19831 0.99573 0.96111 0.93328 1.20841 1.01427 0.94956 0.97202 1.20946 1.00088 0.94915 0.97100 1.19388 0.99876 0.94050 0.93474 1.20295 0.95850 0.92182 1.01054 0.88789 1.21952 0.94242 1.03173 1.00919 1.20168 0.85793 0.82596 0.81750 1.90683 1.36149 1.73689 1.40034 1.47786 1.25633 1.05510 1.54043 1.21943 0.89549 1.00187 0.95661 1.19650 0.87709 0.89039 0.94040 1.21325 1.08617 1.30632 0.95861 0.90772 1.24855 0.97665 0.95836 0.94683 1.69893 1.38120 1.37540 1.08132 0.86872 0.84102 0.79572 0.79343 1.20114 1.20942 1.18908 1.21025 0.96244 0.93560 0.98143 1.20983 1.00677 0.95013 0.97317 0.92608 0.92368 0.92677 0.91269 0.91401 0.86578 0.86435 0.91661 0.90729 0.91745 0.93777 0.90975 0.90664 0.94321 0.95752 0.92604 0.85710 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.08 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.09 -1.11 5.13 -104.62 -0.54 -1.65 16 4 C -0.13 -1.56 9.70 -39.58 -0.38 -1.94 16 5 C -0.11 -1.49 9.67 -39.58 -0.38 -1.88 16 6 C -0.07 -1.04 4.54 -104.62 -0.47 -1.51 16 7 C -0.07 -1.09 2.09 -92.93 -0.19 -1.29 16 8 H 0.09 1.19 7.46 -51.93 -0.39 0.80 16 9 C -0.15 -1.91 8.71 37.16 0.32 -1.59 16 10 C 0.51 10.53 6.85 -10.99 -0.08 10.45 16 11 O -0.53 -13.19 14.30 5.55 0.08 -13.11 16 12 N -0.60 -12.42 2.86 -182.95 -0.52 -12.95 16 13 C 0.07 1.08 9.86 59.84 0.59 1.67 16 14 C 0.22 5.37 4.20 -5.19 -0.02 5.35 16 15 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 16 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 19 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 23 C -0.07 -1.16 7.72 -39.58 -0.31 -1.46 16 24 C -0.12 -1.72 9.70 -39.58 -0.38 -2.11 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.29 7.95 -52.49 -0.42 0.87 16 32 H 0.06 0.93 7.11 -51.92 -0.37 0.56 16 33 H 0.07 0.98 5.49 -51.93 -0.29 0.69 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.91 4.16 -51.93 -0.22 0.70 16 37 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 38 H 0.04 1.04 6.56 -51.93 -0.34 0.70 16 39 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.12 2.19 7.14 -52.48 -0.37 1.82 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -34.33 339.71 -7.90 -42.23 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.59 Total: 0.27 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.09 Total: -11.54 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.25 Total: -40.09 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.33 -7.90 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068112394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.451 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds