Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47101 * 2 1 4 4 C 1.38231 * 119.99857 * 89.99997 * 3 2 1 5 5 C 1.38239 * 119.99903 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99776 * 359.95903 * 5 4 3 7 7 C 1.50695 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47484 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.47172 * 119.99907 * 7 6 5 10 10 C 1.50700 * 109.47524 * 240.00398 * 7 6 5 11 11 O 1.21285 * 119.99858 * 346.33583 * 10 7 6 12 12 N 1.34773 * 120.00076 * 166.33276 * 10 7 6 13 13 C 1.46492 * 120.00253 * 4.99804 * 12 10 7 14 14 C 1.46504 * 119.99832 * 184.99660 * 12 10 7 15 15 C 1.50697 * 109.47593 * 270.00309 * 14 12 10 16 16 H 1.08006 * 119.99501 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00552 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00510 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99514 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46953 * 90.00181 * 19 17 15 21 21 H 1.48498 * 109.47089 * 209.99910 * 19 17 15 22 22 H 1.48504 * 109.47473 * 330.00295 * 19 17 15 23 23 C 1.38238 * 120.00042 * 0.27913 * 6 5 4 24 24 C 1.38234 * 119.99864 * 359.53029 * 23 6 5 25 25 H 1.09001 * 109.47065 * 299.99742 * 1 2 3 26 26 H 1.09000 * 109.47227 * 59.99928 * 1 2 3 27 27 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47065 * 240.00258 * 2 1 3 29 29 H 1.09000 * 109.47227 * 120.00072 * 2 1 3 30 30 H 1.08001 * 119.99902 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.99877 * 179.97438 * 5 4 3 32 32 H 1.09010 * 109.46524 * 50.23004 * 9 7 6 33 33 H 1.09006 * 109.47131 * 170.22034 * 9 7 6 34 34 H 1.08998 * 109.47796 * 290.22902 * 9 7 6 35 35 H 1.08997 * 109.47320 * 267.18748 * 13 12 10 36 36 H 1.09000 * 109.47180 * 27.19460 * 13 12 10 37 37 H 1.09006 * 109.46941 * 147.18690 * 13 12 10 38 38 H 1.09007 * 109.47308 * 30.00679 * 14 12 10 39 39 H 1.09001 * 109.46883 * 149.99714 * 14 12 10 40 40 H 0.96997 * 120.00034 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99682 * 179.73096 * 23 6 5 42 42 H 1.07998 * 119.99989 * 180.22003 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9536 4.0275 0.0000 7 6 3.4549 5.4486 -0.0001 8 1 3.5755 5.7915 1.0276 9 6 4.8031 5.5139 -0.7204 10 6 2.4620 6.3315 -0.7113 11 8 1.5818 5.8360 -1.3826 12 7 2.5522 7.6717 -0.6013 13 6 3.6774 8.2736 0.1181 14 6 1.5248 8.5267 -1.2012 15 6 1.9186 8.8688 -2.6150 16 1 2.8417 8.4871 -3.0258 17 6 1.1006 9.6689 -3.3842 18 7 1.4441 9.9670 -4.6182 19 14 -0.4962 10.3284 -2.6739 20 1 -0.2442 11.6389 -2.0224 21 1 -1.4892 10.5008 -3.7646 22 1 -1.0247 9.3700 -1.6702 23 6 2.7186 3.3775 -1.1972 24 6 2.2620 2.0727 -1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0831 1.5632 2.1324 31 1 2.9025 3.8852 2.1324 32 1 4.7240 5.0129 -1.6853 33 1 5.0828 6.5562 -0.8741 34 1 5.5628 5.0193 -0.1153 35 1 3.3990 8.4335 1.1597 36 1 4.5380 7.6063 0.0703 37 1 3.9326 9.2290 -0.3406 38 1 0.5710 7.9990 -1.2073 39 1 1.4292 9.4431 -0.6188 40 1 0.8684 10.5296 -5.1594 41 1 2.8947 3.8880 -2.1325 42 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068112394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -38.677833 kcal Electronic energy + Delta-G solvation = -21242.225452 eV Core-core repulsion = 18186.074487 eV Total energy + Delta-G solvation = -3056.150965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35415 -39.88137 -36.68235 -36.03480 -34.73814 -33.46973 -31.78241 -30.50099 -29.27789 -27.55684 -25.80497 -24.82506 -23.64455 -23.16716 -21.47611 -19.91915 -19.15285 -17.94373 -17.47331 -16.84024 -16.37407 -16.23595 -16.01730 -15.55775 -15.07330 -14.78600 -14.54349 -14.38511 -14.35302 -14.00984 -13.88079 -13.71459 -13.53532 -13.32255 -13.13301 -12.75092 -12.66254 -12.51869 -12.41069 -12.06343 -12.06195 -11.97284 -11.76838 -11.64369 -11.60098 -10.83700 -10.51886 -9.72775 -9.42340 -9.33990 -8.35566 -6.40334 0.43284 0.57790 1.29384 1.34361 1.45029 1.80595 2.29427 2.33780 2.91679 2.98642 3.59322 3.75326 3.95085 4.00729 4.15129 4.20441 4.27208 4.35887 4.41766 4.53229 4.60225 4.64532 4.70314 4.74202 4.75863 4.78366 4.88127 4.95479 5.00048 5.06978 5.08758 5.18948 5.24352 5.30286 5.39096 5.44793 5.55673 5.63179 5.76803 5.78369 6.17405 6.23122 6.60588 6.71445 7.20556 7.43999 8.81638 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021621 B = 0.004406 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.714713 B = 6354.010534 C = 6966.574654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.088 4.088 4 C -0.126 4.126 5 C -0.111 4.111 6 C -0.088 4.088 7 C -0.058 4.058 8 H 0.132 0.868 9 C -0.142 4.142 10 C 0.499 3.501 11 O -0.586 6.586 12 N -0.607 5.607 13 C 0.063 3.937 14 C 0.224 3.776 15 C -0.534 4.534 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.949 3.051 20 H -0.248 1.248 21 H -0.282 1.282 22 H -0.258 1.258 23 C -0.098 4.098 24 C -0.138 4.138 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.015 0.985 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.091 0.909 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -15.553 17.075 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.144 4.144 5 C -0.129 4.129 6 C -0.088 4.088 7 C -0.079 4.079 8 H 0.149 0.851 9 C -0.199 4.199 10 C 0.288 3.712 11 O -0.466 6.466 12 N -0.338 5.338 13 C -0.078 4.078 14 C 0.102 3.898 15 C -0.573 4.573 16 H 0.045 0.955 17 C -0.188 4.188 18 N -0.586 5.586 19 Si 0.771 3.229 20 H -0.172 1.172 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.116 4.116 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.033 0.967 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.531 -15.676 16.582 23.264 hybrid contribution -0.762 0.836 -1.026 1.528 sum 3.769 -14.840 15.555 21.826 Atomic orbital electron populations 1.21749 0.94751 1.02394 1.01499 1.20569 0.96073 0.91209 1.03851 1.20198 0.98393 0.97476 0.92760 1.21271 1.00043 0.94767 0.98274 1.21291 0.99003 0.95378 0.97227 1.19507 1.01152 0.94223 0.93947 1.20299 0.94542 0.90959 1.02139 0.85059 1.21957 0.94258 1.03272 1.00416 1.21267 0.85997 0.82848 0.81109 1.90647 1.38742 1.74730 1.42479 1.47926 1.26212 1.05643 1.54036 1.22268 0.88780 1.00040 0.96752 1.19307 0.88058 0.90250 0.92193 1.21555 1.07072 1.30366 0.98311 0.95484 1.25865 1.01840 0.96134 0.94941 1.70051 1.39982 1.38719 1.09873 0.85701 0.78627 0.79841 0.78713 1.17248 1.20733 1.18257 1.20938 0.98431 0.94678 0.97593 1.21138 1.01177 0.94594 0.98675 0.92782 0.94189 0.90630 0.90644 0.89132 0.83362 0.83415 0.93968 0.90768 0.88028 0.90064 0.88189 0.91712 0.96683 0.93289 0.92280 0.89089 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.89 71.98 0.71 -1.80 16 2 C -0.08 -1.36 6.06 29.85 0.18 -1.18 16 3 C -0.09 -2.08 5.13 -19.87 -0.10 -2.18 16 4 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 5 C -0.11 -2.63 9.67 22.27 0.22 -2.42 16 6 C -0.09 -2.64 4.54 -19.87 -0.09 -2.73 16 7 C -0.06 -1.69 2.09 -12.29 -0.03 -1.71 16 8 H 0.13 2.79 7.46 -2.38 -0.02 2.77 16 9 C -0.14 -3.59 8.71 71.98 0.63 -2.96 16 10 C 0.50 20.90 6.85 87.66 0.60 21.50 16 11 O -0.59 -30.78 14.30 -3.05 -0.04 -30.82 16 12 N -0.61 -25.17 2.86 -851.13 -2.43 -27.60 16 13 C 0.06 1.80 9.86 127.77 1.26 3.06 16 14 C 0.22 11.26 4.20 85.63 0.36 11.62 16 15 C -0.53 -32.29 9.94 25.60 0.25 -32.03 16 16 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 17 C 0.01 0.60 5.47 84.66 0.46 1.07 16 18 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 19 Si 0.95 45.39 27.47 68.60 1.88 47.28 16 20 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 23 C -0.10 -3.34 7.72 22.27 0.17 -3.17 16 24 C -0.14 -4.00 9.70 22.27 0.22 -3.79 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.15 2.54 7.95 -2.91 -0.02 2.52 16 32 H 0.04 1.25 7.11 -2.38 -0.02 1.23 16 33 H 0.07 1.86 5.49 -2.38 -0.01 1.84 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.27 4.16 -2.39 -0.01 2.26 16 37 H 0.06 1.99 8.09 -2.38 -0.02 1.97 16 38 H 0.02 0.83 6.56 -2.38 -0.02 0.81 16 39 H 0.05 2.21 7.50 -2.39 -0.02 2.19 16 40 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 41 H 0.09 3.59 7.14 -2.91 -0.02 3.57 16 42 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -80.57 339.71 5.70 -74.87 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.93 Total: 16.13 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 5.06 Total: -19.24 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -2.13 Total: -88.22 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.04 Total: -30.82 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -80.57 5.70 -74.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068112394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.195 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds