Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50702 * 109.47403 * 2 1 4 4 C 1.38233 * 119.99934 * 269.72624 * 3 2 1 5 5 C 1.38239 * 119.99567 * 179.76746 * 4 3 2 6 6 C 1.38234 * 120.00220 * 0.50625 * 5 4 3 7 7 C 1.50700 * 120.00113 * 179.72676 * 6 5 4 8 8 H 1.08995 * 109.47159 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47005 * 60.02188 * 7 6 5 10 10 C 1.50698 * 109.47012 * 300.02634 * 7 6 5 11 11 O 1.21276 * 120.00268 * 13.80913 * 10 7 6 12 12 N 1.34774 * 119.99788 * 193.82021 * 10 7 6 13 13 C 1.46503 * 120.00379 * 3.73682 * 12 10 7 14 14 C 1.46503 * 120.00205 * 183.73752 * 12 10 7 15 15 C 1.50707 * 109.47033 * 89.99695 * 14 12 10 16 16 H 1.08003 * 119.99439 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99869 * 180.02562 * 15 14 12 18 18 N 1.31505 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99698 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47080 * 89.99532 * 19 17 15 21 21 H 1.48499 * 109.47064 * 209.99426 * 19 17 15 22 22 H 1.48497 * 109.47362 * 329.99994 * 19 17 15 23 23 C 1.38234 * 119.99724 * 359.74939 * 6 5 4 24 24 C 1.38235 * 120.00416 * 359.97438 * 23 6 5 25 25 H 1.08999 * 109.47751 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47096 * 300.00043 * 1 2 3 27 27 H 1.09001 * 109.47326 * 59.99317 * 1 2 3 28 28 H 1.09001 * 109.47326 * 120.00683 * 2 1 3 29 29 H 1.09007 * 109.47096 * 239.99957 * 2 1 3 30 30 H 1.08002 * 120.00530 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99681 * 180.23642 * 5 4 3 32 32 H 1.09002 * 109.47064 * 56.05499 * 9 7 6 33 33 H 1.09005 * 109.47252 * 176.05006 * 9 7 6 34 34 H 1.09001 * 109.47525 * 296.05327 * 9 7 6 35 35 H 1.08998 * 109.47142 * 84.67354 * 13 12 10 36 36 H 1.08995 * 109.47541 * 204.68063 * 13 12 10 37 37 H 1.09003 * 109.46437 * 324.67899 * 13 12 10 38 38 H 1.08997 * 109.47720 * 209.99486 * 14 12 10 39 39 H 1.09006 * 109.46925 * 330.00384 * 14 12 10 40 40 H 0.97002 * 120.00176 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.99804 * 179.97438 * 23 6 5 42 42 H 1.07999 * 120.00004 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7244 3.3754 -1.1971 6 6 2.9548 4.0271 0.0001 7 6 3.4581 5.4475 0.0001 8 1 3.5795 5.7900 1.0277 9 6 2.4509 6.3454 -0.7211 10 6 4.7856 5.5101 -0.7104 11 8 5.1580 4.5725 -1.3834 12 7 5.5591 6.6080 -0.5977 13 6 5.1483 7.7066 0.2801 14 6 6.8108 6.7030 -1.3531 15 6 6.5419 7.3382 -2.6930 16 1 5.5390 7.6412 -2.9554 17 6 7.5762 7.5324 -3.5838 18 7 8.7974 7.1639 -3.2640 19 14 7.2430 8.3204 -5.2444 20 1 7.3928 9.7936 -5.1322 21 1 8.2109 7.7991 -6.2427 22 1 5.8606 7.9951 -5.6782 23 6 2.7240 3.3755 1.1972 24 6 2.2623 2.0725 1.1972 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 2.0927 1.5598 -2.1325 31 1 2.9050 3.8844 -2.1324 32 1 1.4731 6.2463 -0.2497 33 1 2.7801 7.3828 -0.6602 34 1 2.3818 6.0470 -1.7672 35 1 5.4704 7.4966 1.3000 36 1 5.6056 8.6352 -0.0615 37 1 4.0630 7.8053 0.2549 38 1 7.5244 7.3125 -0.7988 39 1 7.2228 5.7046 -1.5004 40 1 9.5251 7.3009 -3.8906 41 1 2.9044 3.8845 2.1325 42 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068112396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -25.792426 kcal Electronic energy + Delta-G solvation = -21176.182237 eV Core-core repulsion = 18120.590025 eV Total energy + Delta-G solvation = -3055.592212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95074 -38.52152 -35.04896 -34.66047 -32.86375 -32.13408 -30.70521 -28.60106 -27.61625 -25.95951 -24.60416 -23.48020 -22.54597 -21.95148 -20.36522 -18.33871 -16.51337 -16.48146 -16.10376 -15.38492 -15.16676 -14.76354 -14.42845 -14.15813 -13.81156 -13.70980 -13.48015 -13.08738 -12.85789 -12.69238 -12.43235 -12.07333 -11.94012 -11.89931 -11.55734 -11.49384 -11.25796 -11.16108 -11.07985 -10.86402 -10.62020 -10.59033 -10.52883 -10.13862 -9.61219 -8.87967 -8.58494 -8.43257 -8.28685 -7.59887 -6.03555 -4.08571 1.52341 1.66746 3.29768 3.36315 3.39478 3.47777 3.84043 4.16155 4.45094 4.73597 4.83841 4.91700 5.05381 5.18192 5.27759 5.27798 5.31968 5.41715 5.43379 5.50074 5.60358 5.67875 5.69159 5.77951 5.87709 5.92901 5.96021 6.02115 6.05589 6.18556 6.24216 6.30505 6.38995 6.63401 6.79765 6.90482 7.08592 7.23805 7.47472 7.57357 7.93188 8.24595 8.45648 8.91379 9.13438 9.56643 11.04450 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.004065 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.321103 B = 6886.963458 C = 7330.983272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.122 4.122 5 C -0.072 4.072 6 C -0.066 4.066 7 C -0.074 4.074 8 H 0.092 0.908 9 C -0.140 4.140 10 C 0.511 3.489 11 O -0.534 6.534 12 N -0.602 5.602 13 C 0.076 3.924 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.113 4.113 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.808 -6.742 9.886 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.140 4.140 5 C -0.090 4.090 6 C -0.066 4.066 7 C -0.096 4.096 8 H 0.111 0.889 9 C -0.197 4.197 10 C 0.297 3.703 11 O -0.411 6.411 12 N -0.334 5.334 13 C -0.068 4.068 14 C 0.126 3.874 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.131 4.131 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.385 -7.230 9.450 19.450 hybrid contribution 0.084 0.629 -0.888 1.091 sum -15.301 -6.601 8.563 18.736 Atomic orbital electron populations 1.21739 0.95000 1.01342 1.02163 1.20510 0.95926 0.93048 1.02596 1.19815 0.99824 0.95949 0.93333 1.20977 1.00727 0.94997 0.97285 1.21013 0.95509 0.94358 0.98119 1.19402 0.99030 0.94761 0.93438 1.20317 0.94530 0.93600 1.01123 0.88941 1.21819 0.97698 0.99164 1.01011 1.20120 0.85387 0.82883 0.81955 1.90668 1.72962 1.36401 1.41080 1.48103 1.24467 1.16285 1.44533 1.21803 1.00053 0.91639 0.93286 1.19291 0.79368 0.98577 0.90206 1.21441 0.94583 1.39945 1.00512 0.92475 1.24941 0.94961 0.95719 0.98525 1.69933 0.99749 1.47280 1.36396 0.86504 0.78175 0.79207 0.83579 1.20646 1.21084 1.19904 1.20951 1.00119 0.94912 0.97129 1.20840 1.01509 0.94846 0.97189 0.92696 0.92675 0.92569 0.91329 0.91204 0.86464 0.85812 0.91871 0.91182 0.91806 0.93923 0.90662 0.91945 0.95110 0.93817 0.92725 0.86436 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.15 0.37 -0.86 16 2 C -0.08 -0.82 6.06 -27.89 -0.17 -0.99 16 3 C -0.09 -1.14 5.13 -104.62 -0.54 -1.68 16 4 C -0.12 -1.75 9.70 -39.58 -0.38 -2.13 16 5 C -0.07 -1.18 7.88 -39.58 -0.31 -1.49 16 6 C -0.07 -1.04 4.54 -104.63 -0.47 -1.51 16 7 C -0.07 -1.16 2.07 -92.93 -0.19 -1.35 16 8 H 0.09 1.22 7.22 -51.93 -0.37 0.85 16 9 C -0.14 -1.89 8.68 37.16 0.32 -1.57 16 10 C 0.51 10.80 6.84 -10.99 -0.08 10.73 16 11 O -0.53 -13.60 14.25 5.56 0.08 -13.52 16 12 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 13 C 0.08 1.21 9.86 59.85 0.59 1.80 16 14 C 0.24 6.50 5.17 -5.19 -0.03 6.48 16 15 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 16 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.11 -1.54 9.67 -39.58 -0.38 -1.92 16 24 C -0.13 -1.59 9.70 -39.58 -0.38 -1.97 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.07 0.66 8.08 -51.93 -0.42 0.25 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 2.19 7.22 -52.48 -0.38 1.81 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.90 5.80 -51.93 -0.30 0.60 16 34 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 37 H 0.06 0.82 4.55 -51.93 -0.24 0.58 16 38 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.04 1.32 7.37 -51.93 -0.38 0.93 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -33.31 344.16 -8.28 -41.59 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.66 Total: -0.46 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.08 Total: -10.14 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.21 Total: -39.56 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.31 -8.28 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068112396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.798 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds