Wall clock time and date at job start Mon Mar 30 2020 02:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50702 * 109.47403 * 2 1 4 4 C 1.38233 * 119.99934 * 269.72624 * 3 2 1 5 5 C 1.38239 * 119.99567 * 179.76746 * 4 3 2 6 6 C 1.38234 * 120.00220 * 0.50625 * 5 4 3 7 7 C 1.50700 * 120.00113 * 179.72676 * 6 5 4 8 8 H 1.08995 * 109.47159 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47005 * 60.02188 * 7 6 5 10 10 C 1.50698 * 109.47012 * 300.02634 * 7 6 5 11 11 O 1.21276 * 120.00268 * 13.80913 * 10 7 6 12 12 N 1.34774 * 119.99788 * 193.82021 * 10 7 6 13 13 C 1.46503 * 120.00379 * 3.73682 * 12 10 7 14 14 C 1.46503 * 120.00205 * 183.73752 * 12 10 7 15 15 C 1.50707 * 109.47033 * 89.99695 * 14 12 10 16 16 H 1.08003 * 119.99439 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99869 * 180.02562 * 15 14 12 18 18 N 1.31505 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99698 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47080 * 89.99532 * 19 17 15 21 21 H 1.48499 * 109.47064 * 209.99426 * 19 17 15 22 22 H 1.48497 * 109.47362 * 329.99994 * 19 17 15 23 23 C 1.38234 * 119.99724 * 359.74939 * 6 5 4 24 24 C 1.38235 * 120.00416 * 359.97438 * 23 6 5 25 25 H 1.08999 * 109.47751 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47096 * 300.00043 * 1 2 3 27 27 H 1.09001 * 109.47326 * 59.99317 * 1 2 3 28 28 H 1.09001 * 109.47326 * 120.00683 * 2 1 3 29 29 H 1.09007 * 109.47096 * 239.99957 * 2 1 3 30 30 H 1.08002 * 120.00530 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99681 * 180.23642 * 5 4 3 32 32 H 1.09002 * 109.47064 * 56.05499 * 9 7 6 33 33 H 1.09005 * 109.47252 * 176.05006 * 9 7 6 34 34 H 1.09001 * 109.47525 * 296.05327 * 9 7 6 35 35 H 1.08998 * 109.47142 * 84.67354 * 13 12 10 36 36 H 1.08995 * 109.47541 * 204.68063 * 13 12 10 37 37 H 1.09003 * 109.46437 * 324.67899 * 13 12 10 38 38 H 1.08997 * 109.47720 * 209.99486 * 14 12 10 39 39 H 1.09006 * 109.46925 * 330.00384 * 14 12 10 40 40 H 0.97002 * 120.00176 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.99804 * 179.97438 * 23 6 5 42 42 H 1.07999 * 120.00004 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7244 3.3754 -1.1971 6 6 2.9548 4.0271 0.0001 7 6 3.4581 5.4475 0.0001 8 1 3.5795 5.7900 1.0277 9 6 2.4509 6.3454 -0.7211 10 6 4.7856 5.5101 -0.7104 11 8 5.1580 4.5725 -1.3834 12 7 5.5591 6.6080 -0.5977 13 6 5.1483 7.7066 0.2801 14 6 6.8108 6.7030 -1.3531 15 6 6.5419 7.3382 -2.6930 16 1 5.5390 7.6412 -2.9554 17 6 7.5762 7.5324 -3.5838 18 7 8.7974 7.1639 -3.2640 19 14 7.2430 8.3204 -5.2444 20 1 7.3928 9.7936 -5.1322 21 1 8.2109 7.7991 -6.2427 22 1 5.8606 7.9951 -5.6782 23 6 2.7240 3.3755 1.1972 24 6 2.2623 2.0725 1.1972 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 2.0927 1.5598 -2.1325 31 1 2.9050 3.8844 -2.1324 32 1 1.4731 6.2463 -0.2497 33 1 2.7801 7.3828 -0.6602 34 1 2.3818 6.0470 -1.7672 35 1 5.4704 7.4966 1.3000 36 1 5.6056 8.6352 -0.0615 37 1 4.0630 7.8053 0.2549 38 1 7.5244 7.3125 -0.7988 39 1 7.2228 5.7046 -1.5004 40 1 9.5251 7.3009 -3.8906 41 1 2.9044 3.8845 2.1325 42 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068112396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:24 Heat of formation + Delta-G solvation = -44.843646 kcal Electronic energy + Delta-G solvation = -21177.008360 eV Core-core repulsion = 18120.590025 eV Total energy + Delta-G solvation = -3056.418335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30753 -39.85218 -36.63763 -35.99658 -34.75798 -33.39652 -31.77423 -29.99085 -29.18026 -27.46105 -25.93302 -25.01072 -23.63682 -23.25514 -21.49683 -19.87813 -18.68274 -17.93327 -17.43669 -16.83760 -16.31780 -16.30508 -16.06474 -15.57206 -14.87901 -14.67984 -14.58642 -14.46698 -14.18403 -13.97610 -13.75966 -13.53642 -13.31785 -13.24787 -13.01562 -12.91363 -12.70321 -12.49756 -12.47389 -12.25900 -12.11569 -11.99473 -11.70970 -11.61575 -11.58161 -10.65929 -10.48621 -9.72211 -9.40326 -9.36982 -8.23717 -6.39117 0.44327 0.58302 1.34674 1.37911 1.48145 1.84650 2.31454 2.45126 2.93297 3.05494 3.62030 3.77673 3.94889 4.02037 4.16005 4.21398 4.27064 4.39095 4.43024 4.55452 4.61573 4.69203 4.71341 4.75985 4.81090 4.86749 4.97680 5.01755 5.09637 5.11124 5.18111 5.23177 5.25932 5.30200 5.41342 5.54838 5.57504 5.76964 5.78687 5.85224 6.04940 6.17982 6.68944 6.80101 7.27061 7.49872 8.83325 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.004065 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.321103 B = 6886.963458 C = 7330.983272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.088 4.088 7 C -0.059 4.059 8 H 0.127 0.873 9 C -0.135 4.135 10 C 0.500 3.500 11 O -0.591 6.591 12 N -0.610 5.610 13 C 0.070 3.930 14 C 0.259 3.741 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.261 1.261 21 H -0.281 1.281 22 H -0.273 1.273 23 C -0.113 4.113 24 C -0.126 4.126 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.022 0.978 39 H -0.006 1.006 40 H 0.267 0.733 41 H 0.146 0.854 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.003 -6.434 11.590 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.155 4.155 5 C -0.115 4.115 6 C -0.088 4.088 7 C -0.080 4.080 8 H 0.145 0.855 9 C -0.192 4.192 10 C 0.289 3.711 11 O -0.471 6.471 12 N -0.341 5.341 13 C -0.072 4.072 14 C 0.138 3.862 15 C -0.581 4.581 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.131 4.131 24 C -0.144 4.144 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.040 0.960 39 H 0.012 0.988 40 H 0.076 0.924 41 H 0.164 0.836 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.609 -6.888 11.192 21.973 hybrid contribution 0.774 0.453 -1.374 1.641 sum -16.835 -6.435 9.818 20.524 Atomic orbital electron populations 1.21712 0.93745 1.02439 1.01974 1.20580 0.96917 0.91142 1.03392 1.20189 0.98606 0.97279 0.92784 1.21143 1.01205 0.94522 0.98650 1.20945 0.97468 0.95526 0.97589 1.19521 1.00264 0.95069 0.93984 1.20303 0.91076 0.94588 1.02081 0.85498 1.21824 0.98755 0.98950 0.99690 1.21217 0.86893 0.81668 0.81368 1.90633 1.74502 1.38425 1.43558 1.48139 1.22963 1.18203 1.44768 1.22120 1.02240 0.89420 0.93409 1.18742 0.81695 0.95201 0.90570 1.21708 0.94538 1.40162 1.01648 0.92749 1.25890 0.94650 0.96137 1.02609 1.70057 1.00722 1.48213 1.37931 0.85398 0.77892 0.79048 0.78371 1.18622 1.20676 1.19748 1.21287 0.99189 0.95375 0.97249 1.21258 1.00239 0.94609 0.98291 0.90978 0.92284 0.93354 0.89791 0.91200 0.85915 0.88859 0.88660 0.90226 0.94243 0.91031 0.91307 0.88517 0.95982 0.98771 0.92403 0.83610 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.08 -1.46 6.06 29.85 0.18 -1.28 16 3 C -0.09 -2.14 5.13 -19.86 -0.10 -2.24 16 4 C -0.14 -4.01 9.70 22.27 0.22 -3.79 16 5 C -0.10 -3.32 7.88 22.27 0.18 -3.14 16 6 C -0.09 -2.71 4.54 -19.87 -0.09 -2.80 16 7 C -0.06 -1.78 2.07 -12.29 -0.03 -1.80 16 8 H 0.13 2.89 7.22 -2.39 -0.02 2.88 16 9 C -0.14 -3.45 8.68 71.98 0.62 -2.82 16 10 C 0.50 21.64 6.84 87.66 0.60 22.24 16 11 O -0.59 -31.92 14.25 -3.02 -0.04 -31.96 16 12 N -0.61 -26.60 2.86 -851.12 -2.43 -29.03 16 13 C 0.07 2.10 9.86 127.77 1.26 3.36 16 14 C 0.26 14.44 5.17 85.63 0.44 14.88 16 15 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 16 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 19 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.11 -2.80 9.67 22.27 0.22 -2.58 16 24 C -0.13 -2.83 9.70 22.27 0.22 -2.62 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 29 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 30 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.09 3.65 7.22 -2.91 -0.02 3.62 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.84 5.80 -2.38 -0.01 1.83 16 34 H 0.04 1.19 7.53 -2.39 -0.02 1.17 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 2.16 8.03 -2.39 -0.02 2.14 16 37 H 0.10 2.23 4.55 -2.39 -0.01 2.22 16 38 H 0.02 1.24 8.07 -2.39 -0.02 1.23 16 39 H -0.01 -0.38 7.37 -2.38 -0.02 -0.40 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.15 2.70 7.95 -2.91 -0.02 2.68 16 42 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -77.09 344.16 5.95 -71.14 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.98 Total: 14.08 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.13 Total: -14.73 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.15 Total: -86.10 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.04 Total: -31.96 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -77.09 5.95 -71.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068112396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.297 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds