Wall clock time and date at job start Mon Mar 30 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47437 * 2 1 4 4 C 1.38238 * 120.00043 * 89.99624 * 3 2 1 5 5 C 1.38230 * 120.00096 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00163 * 359.95737 * 5 4 3 7 7 C 1.50701 * 120.00216 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47419 * 120.00264 * 7 6 5 10 10 C 1.50703 * 109.47064 * 240.00219 * 7 6 5 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 7 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.50695 * 109.47162 * 204.99813 * 13 12 10 17 17 H 1.07999 * 120.00376 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00418 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99687 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00415 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47014 * 89.99851 * 20 18 16 22 22 H 1.48504 * 109.47213 * 209.99515 * 20 18 16 23 23 H 1.48496 * 109.47167 * 329.99713 * 20 18 16 24 24 C 1.38236 * 119.99764 * 0.27659 * 6 5 4 25 25 C 1.38230 * 120.00201 * 269.98568 * 3 2 1 26 26 H 1.09001 * 109.46755 * 299.99857 * 1 2 3 27 27 H 1.08996 * 109.47183 * 59.99526 * 1 2 3 28 28 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47229 * 240.00268 * 2 1 3 30 30 H 1.09002 * 109.47115 * 120.00057 * 2 1 3 31 31 H 1.08003 * 119.99697 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.99752 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 34 34 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 36 36 H 0.97005 * 119.99463 * 359.97438 * 12 10 7 37 37 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 38 38 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 39 39 H 1.09000 * 109.47057 * 180.02562 * 15 13 12 40 40 H 0.97003 * 120.00117 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.00235 * 179.72447 * 24 6 5 42 42 H 1.08003 * 119.99913 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3759 1.1972 6 6 2.9539 4.0274 0.0001 7 6 3.4563 5.4482 0.0001 8 1 3.5776 5.7907 1.0278 9 6 4.8044 5.5125 -0.7207 10 6 2.4639 6.3319 -0.7107 11 8 1.4489 5.8549 -1.1723 12 7 2.7049 7.6522 -0.8344 13 6 1.7399 8.5114 -1.5249 14 1 1.2843 7.9588 -2.3466 15 6 0.6533 8.9509 -0.5415 16 6 2.4474 9.7262 -2.0677 17 1 3.5095 9.8465 -1.9134 18 6 1.7386 10.6847 -2.7604 19 7 0.4451 10.5385 -2.9479 20 14 2.6154 12.1909 -3.4327 21 1 3.0983 11.9096 -4.8086 22 1 1.6740 13.3390 -3.4636 23 1 3.7708 12.5214 -2.5604 24 6 2.7190 3.3773 -1.1970 25 6 2.2631 2.0723 -1.1971 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0823 1.5635 2.1325 32 1 2.9027 3.8851 2.1325 33 1 4.6836 5.1698 -1.7484 34 1 5.1680 6.5401 -0.7203 35 1 5.5222 4.8733 -0.2066 36 1 3.5169 8.0336 -0.4655 37 1 0.1416 8.0722 -0.1489 38 1 1.1088 9.5035 0.2802 39 1 -0.0649 9.5898 -1.0554 40 1 -0.0537 11.2130 -3.4350 41 1 2.8951 3.8878 -2.1324 42 1 2.0837 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068122700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:37 Heat of formation + Delta-G solvation = -39.561778 kcal Electronic energy + Delta-G solvation = -20973.989044 eV Core-core repulsion = 17917.799748 eV Total energy + Delta-G solvation = -3056.189296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90979 -38.47057 -35.17878 -34.49939 -32.79852 -32.02878 -30.74774 -29.01934 -28.10079 -25.25950 -24.74795 -23.15028 -22.57837 -21.19479 -20.16912 -19.17043 -17.16668 -16.27247 -15.76282 -15.35564 -15.25440 -14.84431 -14.34931 -14.10345 -13.63934 -13.57964 -13.30973 -13.05841 -13.02792 -12.69327 -12.39291 -12.08373 -11.85531 -11.58830 -11.51697 -11.36452 -11.12727 -11.05845 -10.95019 -10.75554 -10.64581 -10.60731 -10.28697 -10.22416 -9.04126 -8.94754 -8.66141 -8.53446 -8.31712 -7.86436 -6.11476 -4.20804 1.49794 1.62878 3.24513 3.31100 3.32856 3.45027 3.84264 4.22968 4.42912 4.71100 4.83260 4.89731 5.09967 5.16257 5.20606 5.29206 5.33505 5.38837 5.48722 5.58446 5.64504 5.67665 5.77862 5.86946 5.91351 5.99637 6.10618 6.20493 6.24359 6.29367 6.59798 6.75672 6.83870 6.86313 6.99006 7.17339 7.19655 7.49573 7.58847 7.71294 7.93530 8.16676 8.70454 8.80195 9.17699 9.47123 10.94456 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.003599 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.664336 B = 7777.735260 C = 8099.316216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.090 4.090 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.060 4.060 7 C -0.077 4.077 8 H 0.097 0.903 9 C -0.138 4.138 10 C 0.505 3.495 11 O -0.546 6.546 12 N -0.709 5.709 13 C 0.265 3.735 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.077 4.077 25 C -0.121 4.121 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.388 0.612 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.089 0.911 40 H 0.264 0.736 41 H 0.120 0.880 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -16.026 7.369 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.142 4.142 5 C -0.130 4.130 6 C -0.061 4.061 7 C -0.099 4.099 8 H 0.115 0.885 9 C -0.195 4.195 10 C 0.289 3.711 11 O -0.425 6.425 12 N -0.357 5.357 13 C 0.163 3.837 14 H 0.065 0.935 15 C -0.206 4.206 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.095 4.095 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.220 0.780 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.408 -16.235 6.929 18.462 hybrid contribution 0.718 1.198 -0.149 1.405 sum 6.125 -15.037 6.780 17.595 Atomic orbital electron populations 1.21752 0.94857 1.01331 1.02529 1.20503 0.96138 0.92910 1.02359 1.19817 0.99708 0.96135 0.93316 1.20856 1.01160 0.94953 0.97222 1.20957 1.00003 0.94883 0.97195 1.19357 0.99267 0.94020 0.93422 1.20371 0.95822 0.92315 1.01368 0.88532 1.21761 0.94420 1.02602 1.00757 1.20248 0.86987 0.83234 0.80616 1.90671 1.28145 1.74435 1.49200 1.46508 1.24774 1.07188 1.57192 1.18712 0.86091 0.88241 0.90626 0.93460 1.22074 1.00629 0.99118 0.98733 1.21224 0.94931 1.05065 1.35927 0.92110 1.24894 0.94874 0.98265 0.95717 1.69910 1.06530 1.35184 1.40479 0.86455 0.79310 0.82028 0.79337 1.20566 1.21082 1.19855 1.20920 0.96968 0.93780 0.97849 1.20949 1.00650 0.94991 0.97301 0.92559 0.92384 0.92684 0.91314 0.91397 0.86555 0.86385 0.91941 0.91519 0.91893 0.78011 0.96708 0.95530 0.89201 0.92599 0.86210 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.08 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.09 -1.12 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 5 C -0.11 -1.51 9.67 -39.59 -0.38 -1.90 16 6 C -0.06 -0.91 4.40 -104.63 -0.46 -1.37 16 7 C -0.08 -1.15 2.90 -92.92 -0.27 -1.42 16 8 H 0.10 1.24 7.88 -51.93 -0.41 0.83 16 9 C -0.14 -1.72 8.90 37.16 0.33 -1.39 16 10 C 0.51 10.13 6.99 -10.98 -0.08 10.06 16 11 O -0.55 -13.22 14.75 5.56 0.08 -13.13 16 12 N -0.71 -14.79 4.96 -54.94 -0.27 -15.06 16 13 C 0.26 6.80 2.56 -69.09 -0.18 6.63 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 16 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -25.07 11.32 55.43 0.63 -24.45 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.08 -1.20 7.92 -39.58 -0.31 -1.52 16 25 C -0.12 -1.66 9.70 -39.59 -0.38 -2.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.34 7.95 -52.49 -0.42 0.93 16 33 H 0.06 0.83 7.40 -51.93 -0.38 0.44 16 34 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.39 6.97 7.96 -40.82 -0.32 6.65 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.12 1.95 7.52 -52.48 -0.39 1.55 16 42 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.07 346.12 -8.67 -39.74 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.79 Total: 6.71 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.51 Total: -14.68 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.35 Total: -39.51 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.07 -8.67 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068122700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.176 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds