Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47437 * 2 1 4 4 C 1.38238 * 120.00043 * 89.99624 * 3 2 1 5 5 C 1.38230 * 120.00096 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00163 * 359.95737 * 5 4 3 7 7 C 1.50701 * 120.00216 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47419 * 120.00264 * 7 6 5 10 10 C 1.50703 * 109.47064 * 240.00219 * 7 6 5 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 7 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.50695 * 109.47162 * 204.99813 * 13 12 10 17 17 H 1.07999 * 120.00376 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00418 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99687 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00415 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47014 * 89.99851 * 20 18 16 22 22 H 1.48504 * 109.47213 * 209.99515 * 20 18 16 23 23 H 1.48496 * 109.47167 * 329.99713 * 20 18 16 24 24 C 1.38236 * 119.99764 * 0.27659 * 6 5 4 25 25 C 1.38230 * 120.00201 * 269.98568 * 3 2 1 26 26 H 1.09001 * 109.46755 * 299.99857 * 1 2 3 27 27 H 1.08996 * 109.47183 * 59.99526 * 1 2 3 28 28 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47229 * 240.00268 * 2 1 3 30 30 H 1.09002 * 109.47115 * 120.00057 * 2 1 3 31 31 H 1.08003 * 119.99697 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.99752 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 34 34 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 36 36 H 0.97005 * 119.99463 * 359.97438 * 12 10 7 37 37 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 38 38 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 39 39 H 1.09000 * 109.47057 * 180.02562 * 15 13 12 40 40 H 0.97003 * 120.00117 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.00235 * 179.72447 * 24 6 5 42 42 H 1.08003 * 119.99913 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3759 1.1972 6 6 2.9539 4.0274 0.0001 7 6 3.4563 5.4482 0.0001 8 1 3.5776 5.7907 1.0278 9 6 4.8044 5.5125 -0.7207 10 6 2.4639 6.3319 -0.7107 11 8 1.4489 5.8549 -1.1723 12 7 2.7049 7.6522 -0.8344 13 6 1.7399 8.5114 -1.5249 14 1 1.2843 7.9588 -2.3466 15 6 0.6533 8.9509 -0.5415 16 6 2.4474 9.7262 -2.0677 17 1 3.5095 9.8465 -1.9134 18 6 1.7386 10.6847 -2.7604 19 7 0.4451 10.5385 -2.9479 20 14 2.6154 12.1909 -3.4327 21 1 3.0983 11.9096 -4.8086 22 1 1.6740 13.3390 -3.4636 23 1 3.7708 12.5214 -2.5604 24 6 2.7190 3.3773 -1.1970 25 6 2.2631 2.0723 -1.1971 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0823 1.5635 2.1325 32 1 2.9027 3.8851 2.1325 33 1 4.6836 5.1698 -1.7484 34 1 5.1680 6.5401 -0.7203 35 1 5.5222 4.8733 -0.2066 36 1 3.5169 8.0336 -0.4655 37 1 0.1416 8.0722 -0.1489 38 1 1.1088 9.5035 0.2802 39 1 -0.0649 9.5898 -1.0554 40 1 -0.0537 11.2130 -3.4350 41 1 2.8951 3.8878 -2.1324 42 1 2.0837 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068122700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = -57.070622 kcal Electronic energy + Delta-G solvation = -20974.748284 eV Core-core repulsion = 17917.799748 eV Total energy + Delta-G solvation = -3056.948536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22064 -39.83025 -36.81187 -35.88848 -34.41253 -33.40665 -31.78290 -30.75592 -29.24547 -27.35608 -25.85271 -24.34834 -23.63258 -22.68396 -21.50893 -20.77830 -18.87404 -17.52569 -17.43531 -16.93828 -16.47018 -16.24585 -15.73261 -15.48729 -14.88202 -14.69323 -14.54017 -14.43499 -14.10347 -14.03160 -13.79807 -13.60527 -13.19972 -12.98918 -12.91516 -12.78265 -12.63637 -12.50051 -12.29598 -12.26691 -12.12923 -11.98235 -11.63374 -11.60275 -11.11700 -10.65890 -10.51451 -9.76061 -9.69831 -9.37186 -8.17945 -6.35761 0.44776 0.57704 1.44461 1.44988 1.55881 1.85958 2.35309 2.60196 2.99205 3.12560 3.64093 3.86206 3.96948 4.08097 4.16040 4.25164 4.32354 4.43794 4.53635 4.60632 4.70840 4.73522 4.74891 4.86849 4.90303 4.93851 5.06935 5.08207 5.09205 5.18720 5.23712 5.27952 5.39339 5.43785 5.56303 5.61780 5.68830 5.76683 5.77457 5.91375 6.09659 6.18017 6.72742 6.99901 7.32377 7.59495 8.88417 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.003599 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.664336 B = 7777.735260 C = 8099.316216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.082 4.082 7 C -0.064 4.064 8 H 0.126 0.874 9 C -0.133 4.133 10 C 0.501 3.499 11 O -0.594 6.594 12 N -0.704 5.704 13 C 0.272 3.728 14 H -0.006 1.006 15 C -0.133 4.133 16 C -0.546 4.546 17 H 0.075 0.925 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.258 1.258 24 C -0.101 4.101 25 C -0.135 4.135 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.405 0.595 37 H 0.009 0.991 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.265 0.735 41 H 0.097 0.903 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 -16.665 9.178 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.082 4.082 7 C -0.085 4.085 8 H 0.144 0.856 9 C -0.191 4.191 10 C 0.287 3.713 11 O -0.475 6.475 12 N -0.353 5.353 13 C 0.168 3.832 14 H 0.012 0.988 15 C -0.192 4.192 16 C -0.584 4.584 17 H 0.093 0.907 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.182 1.182 24 C -0.119 4.119 25 C -0.153 4.153 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.240 0.760 37 H 0.028 0.972 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.329 -16.884 8.763 20.386 hybrid contribution 0.075 1.295 -0.718 1.482 sum 7.405 -15.589 8.045 19.042 Atomic orbital electron populations 1.21749 0.94800 1.02382 1.01487 1.20565 0.96027 0.91204 1.03862 1.20196 0.98549 0.97521 0.92798 1.21255 1.00021 0.94740 0.98359 1.21274 0.99368 0.95483 0.97350 1.19486 1.00589 0.94203 0.93968 1.20349 0.94966 0.91026 1.02158 0.85628 1.21768 0.93597 1.03771 0.99939 1.21227 0.87241 0.83059 0.79725 1.90646 1.30590 1.75161 1.51072 1.46256 1.24640 1.07408 1.57013 1.18294 0.87032 0.88190 0.89669 0.98763 1.21894 1.00107 0.98472 0.98726 1.21557 0.95637 1.05173 1.36018 0.90719 1.25832 0.95508 1.01474 0.95910 1.70066 1.08211 1.36273 1.41193 0.85329 0.78403 0.77880 0.78630 1.20391 1.20998 1.18188 1.20923 0.98706 0.94825 0.97469 1.21157 1.00850 0.94621 0.98653 0.93018 0.94021 0.90616 0.90401 0.89342 0.83690 0.84032 0.93522 0.90598 0.89086 0.76018 0.97236 0.93960 0.91589 0.92590 0.88458 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.89 71.98 0.71 -1.80 16 2 C -0.08 -1.34 6.06 29.85 0.18 -1.16 16 3 C -0.09 -2.12 5.13 -19.87 -0.10 -2.22 16 4 C -0.13 -2.82 9.70 22.27 0.22 -2.61 16 5 C -0.12 -2.90 9.67 22.27 0.22 -2.69 16 6 C -0.08 -2.44 4.40 -19.87 -0.09 -2.53 16 7 C -0.06 -1.83 2.90 -12.28 -0.04 -1.87 16 8 H 0.13 2.87 7.88 -2.39 -0.02 2.85 16 9 C -0.13 -3.13 8.90 71.98 0.64 -2.49 16 10 C 0.50 20.40 6.99 87.66 0.61 21.01 16 11 O -0.59 -30.08 14.75 -3.02 -0.04 -30.12 16 12 N -0.70 -29.54 4.96 -446.12 -2.21 -31.75 16 13 C 0.27 14.36 2.56 44.24 0.11 14.48 16 14 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 15 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 16 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 17 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 18 C 0.01 0.68 5.30 84.65 0.45 1.13 16 19 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 20 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 C -0.10 -3.25 7.92 22.27 0.18 -3.07 16 25 C -0.13 -3.73 9.70 22.27 0.22 -3.52 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.18 8.09 -2.38 -0.02 1.16 16 30 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.14 2.75 7.95 -2.91 -0.02 2.73 16 33 H 0.05 1.23 7.40 -2.39 -0.02 1.22 16 34 H 0.08 1.62 7.56 -2.39 -0.02 1.61 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.40 14.08 7.96 -92.70 -0.74 13.34 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.10 3.44 7.52 -2.91 -0.02 3.42 16 42 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -69.87 346.12 4.46 -65.40 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.26 Total: 27.96 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.20 Total: -22.46 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.97 Total: -84.97 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.04 Total: -30.12 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.87 4.46 -65.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068122700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.334 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds