Wall clock time and date at job start Mon Mar 30 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.50703 * 109.46981 * 299.97986 * 7 6 5 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00251 * 179.97438 * 12 10 7 14 14 H 1.08999 * 109.47161 * 325.00197 * 13 12 10 15 15 C 1.52998 * 109.46840 * 84.99961 * 13 12 10 16 16 C 1.50697 * 109.47172 * 204.99956 * 13 12 10 17 17 H 1.08000 * 120.00043 * 0.02562 * 16 13 12 18 18 C 1.37881 * 119.99831 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00058 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99736 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47206 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47044 * 120.00151 * 20 18 16 23 23 H 1.48502 * 109.46874 * 239.99803 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 34 34 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 36 36 H 0.97002 * 119.99972 * 0.02562 * 12 10 7 37 37 H 1.08997 * 109.47555 * 299.99576 * 15 13 12 38 38 H 1.08999 * 109.46997 * 60.00722 * 15 13 12 39 39 H 1.09006 * 109.46886 * 180.02562 * 15 13 12 40 40 H 0.96995 * 119.99987 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 42 42 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.7834 5.5127 -0.7096 11 8 5.2746 4.5038 -1.1696 12 7 5.4252 6.6915 -0.8331 13 6 6.7163 6.7539 -1.5224 14 1 7.2795 5.8424 -1.3221 15 6 6.4843 6.8895 -3.0285 16 6 7.4944 7.9446 -1.0247 17 1 7.0697 8.5902 -0.2701 18 6 8.7488 8.2094 -1.5320 19 7 9.2661 7.4231 -2.4505 20 14 9.7136 9.6851 -0.9146 21 1 8.9156 10.4045 0.1104 22 1 10.9917 9.2250 -0.3147 23 1 10.0002 10.5990 -2.0495 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 1.4869 6.2984 -0.2090 34 1 2.8103 7.3727 -0.7227 35 1 2.3273 6.0019 -1.7499 36 1 5.0325 7.4984 -0.4649 37 1 5.9216 6.0282 -3.3885 38 1 5.9212 7.8010 -3.2288 39 1 7.4450 6.9355 -3.5415 40 1 10.1488 7.6091 -2.8071 41 1 2.9031 3.8851 2.1324 42 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068122703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:41 Heat of formation + Delta-G solvation = -39.555779 kcal Electronic energy + Delta-G solvation = -20941.126760 eV Core-core repulsion = 17884.937724 eV Total energy + Delta-G solvation = -3056.189036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91195 -38.47300 -35.18417 -34.50644 -32.81153 -32.03459 -30.75031 -29.02480 -28.13265 -25.24811 -24.77128 -23.15068 -22.58352 -21.21940 -20.18552 -19.15242 -17.15001 -16.31310 -15.80505 -15.33582 -15.20668 -14.85410 -14.30376 -14.11492 -13.77397 -13.64690 -13.34329 -13.14958 -12.93884 -12.46704 -12.37409 -12.27826 -11.88175 -11.68890 -11.47099 -11.38190 -11.14400 -11.08324 -10.94077 -10.74155 -10.64981 -10.60616 -10.28696 -10.23225 -9.02808 -8.95115 -8.66723 -8.53511 -8.31893 -7.86549 -6.11643 -4.20804 1.49747 1.62674 3.23678 3.31420 3.34081 3.45067 3.84227 4.22462 4.43282 4.69860 4.82192 4.88073 5.08361 5.15072 5.20687 5.24983 5.32654 5.37610 5.46139 5.57862 5.63121 5.65476 5.75688 5.85063 5.89044 5.98227 6.03204 6.18519 6.23654 6.28509 6.59612 6.75354 6.83601 6.85786 6.98043 7.16994 7.19376 7.49540 7.58935 7.71300 7.93616 8.16576 8.70572 8.80369 9.17791 9.47182 10.94370 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.003429 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.279913 B = 8163.530568 C = 8298.573496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.060 4.060 7 C -0.078 4.078 8 H 0.097 0.903 9 C -0.137 4.137 10 C 0.505 3.495 11 O -0.546 6.546 12 N -0.709 5.709 13 C 0.264 3.736 14 H 0.047 0.953 15 C -0.146 4.146 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.112 4.112 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.388 0.612 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.089 0.911 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 -7.808 5.311 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.139 4.139 5 C -0.096 4.096 6 C -0.060 4.060 7 C -0.099 4.099 8 H 0.115 0.885 9 C -0.195 4.195 10 C 0.289 3.711 11 O -0.424 6.424 12 N -0.357 5.357 13 C 0.163 3.837 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.130 4.130 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.220 0.780 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.421 -8.542 4.847 19.134 hybrid contribution 0.550 1.255 0.473 1.449 sum -15.871 -7.287 5.320 18.256 Atomic orbital electron populations 1.21741 0.94991 1.01362 1.02153 1.20513 0.95924 0.93026 1.02627 1.19806 0.99881 0.95970 0.93315 1.20943 1.00704 0.94912 0.97293 1.20908 0.96441 0.94454 0.97794 1.19356 0.98544 0.94695 0.93422 1.20372 0.94419 0.93661 1.01463 0.88452 1.21757 0.98078 0.98966 1.00694 1.20247 0.85970 0.84333 0.80529 1.90672 1.67670 1.34627 1.49479 1.46508 1.23632 1.08311 1.57216 1.18721 0.78346 0.98085 0.88577 0.93479 1.22066 1.02168 0.96851 0.99367 1.21266 1.01507 1.11155 1.23175 0.92064 1.24897 0.97298 0.96783 0.94796 1.69914 1.16966 1.37467 1.27751 0.86400 0.79873 0.82206 0.78656 1.19744 1.20887 1.20881 1.20967 0.99928 0.94903 0.97225 1.20861 1.01214 0.94825 0.97230 0.92658 0.92590 0.92679 0.91290 0.91208 0.86489 0.86284 0.91851 0.91581 0.92020 0.78010 0.96729 0.95518 0.89225 0.92653 0.86343 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.80 6.07 -27.88 -0.17 -0.97 16 3 C -0.09 -1.12 5.13 -104.62 -0.54 -1.65 16 4 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 5 C -0.08 -1.20 7.93 -39.58 -0.31 -1.52 16 6 C -0.06 -0.91 4.40 -104.62 -0.46 -1.37 16 7 C -0.08 -1.15 2.90 -92.92 -0.27 -1.42 16 8 H 0.10 1.27 7.88 -51.93 -0.41 0.86 16 9 C -0.14 -1.68 8.90 37.16 0.33 -1.35 16 10 C 0.51 10.14 6.99 -10.98 -0.08 10.07 16 11 O -0.55 -13.24 14.77 5.56 0.08 -13.15 16 12 N -0.71 -14.80 4.96 -54.94 -0.27 -15.07 16 13 C 0.26 6.79 2.56 -69.09 -0.18 6.61 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 16 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 20 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.11 -1.52 9.67 -39.58 -0.38 -1.90 16 25 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.90 7.52 -52.49 -0.39 1.51 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 35 H 0.06 0.79 7.39 -51.93 -0.38 0.41 16 36 H 0.39 6.97 7.96 -40.82 -0.32 6.65 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 1.37 7.95 -52.49 -0.42 0.95 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -31.18 346.13 -8.67 -39.85 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.79 Total: 6.35 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.51 Total: -14.42 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.35 Total: -39.54 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.18 -8.67 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068122703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.290 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds