Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.50703 * 109.46981 * 299.97986 * 7 6 5 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00251 * 179.97438 * 12 10 7 14 14 H 1.08999 * 109.47161 * 325.00197 * 13 12 10 15 15 C 1.52998 * 109.46840 * 84.99961 * 13 12 10 16 16 C 1.50697 * 109.47172 * 204.99956 * 13 12 10 17 17 H 1.08000 * 120.00043 * 0.02562 * 16 13 12 18 18 C 1.37881 * 119.99831 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00058 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99736 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47206 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47044 * 120.00151 * 20 18 16 23 23 H 1.48502 * 109.46874 * 239.99803 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 34 34 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 36 36 H 0.97002 * 119.99972 * 0.02562 * 12 10 7 37 37 H 1.08997 * 109.47555 * 299.99576 * 15 13 12 38 38 H 1.08999 * 109.46997 * 60.00722 * 15 13 12 39 39 H 1.09006 * 109.46886 * 180.02562 * 15 13 12 40 40 H 0.96995 * 119.99987 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 42 42 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.7834 5.5127 -0.7096 11 8 5.2746 4.5038 -1.1696 12 7 5.4252 6.6915 -0.8331 13 6 6.7163 6.7539 -1.5224 14 1 7.2795 5.8424 -1.3221 15 6 6.4843 6.8895 -3.0285 16 6 7.4944 7.9446 -1.0247 17 1 7.0697 8.5902 -0.2701 18 6 8.7488 8.2094 -1.5320 19 7 9.2661 7.4231 -2.4505 20 14 9.7136 9.6851 -0.9146 21 1 8.9156 10.4045 0.1104 22 1 10.9917 9.2250 -0.3147 23 1 10.0002 10.5990 -2.0495 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 1.4869 6.2984 -0.2090 34 1 2.8103 7.3727 -0.7227 35 1 2.3273 6.0019 -1.7499 36 1 5.0325 7.4984 -0.4649 37 1 5.9216 6.0282 -3.3885 38 1 5.9212 7.8010 -3.2288 39 1 7.4450 6.9355 -3.5415 40 1 10.1488 7.6091 -2.8071 41 1 2.9031 3.8851 2.1324 42 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068122703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = -57.112943 kcal Electronic energy + Delta-G solvation = -20941.888096 eV Core-core repulsion = 17884.937724 eV Total energy + Delta-G solvation = -3056.950372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22083 -39.83097 -36.80947 -35.88863 -34.41324 -33.39822 -31.78433 -30.75746 -29.24421 -27.35046 -25.83746 -24.32946 -23.63669 -22.70637 -21.50806 -20.76896 -18.85530 -17.60194 -17.44652 -16.87962 -16.42319 -16.22248 -15.74645 -15.56994 -14.82500 -14.69811 -14.55333 -14.38641 -14.30666 -13.95983 -13.76584 -13.33474 -13.29990 -13.01957 -12.87827 -12.82710 -12.75881 -12.45070 -12.29187 -12.24942 -12.11694 -11.97912 -11.61929 -11.59768 -11.09589 -10.67427 -10.51372 -9.74978 -9.70882 -9.37096 -8.18218 -6.35929 0.44917 0.57576 1.43827 1.44622 1.56959 1.86105 2.35134 2.60243 2.99454 3.12250 3.64086 3.85953 3.96389 4.07957 4.15834 4.25295 4.32291 4.44697 4.55111 4.60872 4.71424 4.73998 4.76030 4.87077 4.90273 4.94147 5.08711 5.09287 5.10898 5.18748 5.23684 5.27920 5.40919 5.44192 5.56392 5.61896 5.69197 5.76497 5.76958 5.91540 6.09792 6.17798 6.72859 6.99935 7.32300 7.59481 8.88361 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.003429 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.279913 B = 8163.530568 C = 8298.573496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.100 4.100 6 C -0.082 4.082 7 C -0.064 4.064 8 H 0.123 0.877 9 C -0.133 4.133 10 C 0.501 3.499 11 O -0.593 6.593 12 N -0.704 5.704 13 C 0.271 3.729 14 H -0.006 1.006 15 C -0.132 4.132 16 C -0.545 4.545 17 H 0.074 0.926 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.974 3.026 21 H -0.258 1.258 22 H -0.284 1.284 23 H -0.278 1.278 24 C -0.118 4.118 25 C -0.126 4.126 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.404 0.596 37 H 0.009 0.991 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.265 0.735 41 H 0.140 0.860 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -7.176 7.350 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.152 4.152 5 C -0.118 4.118 6 C -0.083 4.083 7 C -0.086 4.086 8 H 0.141 0.859 9 C -0.190 4.190 10 C 0.288 3.712 11 O -0.475 6.475 12 N -0.353 5.353 13 C 0.168 3.832 14 H 0.012 0.988 15 C -0.191 4.191 16 C -0.583 4.583 17 H 0.092 0.908 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.210 1.210 23 H -0.204 1.204 24 C -0.136 4.136 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.240 0.760 37 H 0.028 0.972 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.158 0.842 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.049 -7.889 6.905 20.873 hybrid contribution 1.021 0.945 -0.173 1.402 sum -17.028 -6.944 6.732 19.583 Atomic orbital electron populations 1.21712 0.93741 1.02435 1.01979 1.20580 0.96915 0.91164 1.03381 1.20182 0.98741 0.97288 0.92825 1.21157 1.00924 0.94528 0.98614 1.20925 0.97947 0.95502 0.97454 1.19488 0.99748 0.95030 0.93984 1.20347 0.91404 0.94675 1.02129 0.85875 1.21766 0.98585 0.98667 0.99983 1.21222 0.87324 0.83025 0.79658 1.90646 1.69259 1.36189 1.51370 1.46258 1.22253 1.09688 1.57128 1.18300 0.80083 0.95598 0.89228 0.98801 1.21881 1.00885 0.97280 0.99032 1.21590 1.01976 1.11321 1.23452 0.90751 1.25836 0.98406 0.99676 0.94841 1.70067 1.17375 1.39332 1.28968 0.85272 0.78071 0.78490 0.78346 1.18200 1.21042 1.20414 1.21274 0.99450 0.95469 0.97385 1.21243 1.00224 0.94588 0.98360 0.92451 0.93163 0.91003 0.90034 0.91002 0.85519 0.88227 0.89156 0.90538 0.93303 0.76022 0.97191 0.93974 0.91636 0.92589 0.84179 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.08 -1.42 6.07 29.85 0.18 -1.24 16 3 C -0.09 -2.12 5.13 -19.87 -0.10 -2.23 16 4 C -0.13 -3.68 9.70 22.27 0.22 -3.47 16 5 C -0.10 -3.17 7.93 22.27 0.18 -3.00 16 6 C -0.08 -2.44 4.40 -19.87 -0.09 -2.53 16 7 C -0.06 -1.85 2.90 -12.28 -0.04 -1.88 16 8 H 0.12 2.89 7.88 -2.39 -0.02 2.87 16 9 C -0.13 -3.02 8.90 71.98 0.64 -2.38 16 10 C 0.50 20.39 6.99 87.66 0.61 21.00 16 11 O -0.59 -30.04 14.77 -3.03 -0.04 -30.08 16 12 N -0.70 -29.53 4.96 -446.11 -2.21 -31.74 16 13 C 0.27 14.34 2.56 44.24 0.11 14.45 16 14 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 15 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 16 C -0.55 -29.10 8.73 25.60 0.22 -28.87 16 17 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 18 C 0.01 0.66 5.30 84.66 0.45 1.11 16 19 N -0.92 -53.44 11.32 21.45 0.24 -53.19 16 20 Si 0.97 42.19 29.54 68.60 2.03 44.22 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.12 -2.97 9.67 22.27 0.22 -2.76 16 25 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.10 3.42 7.52 -2.91 -0.02 3.40 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.08 1.57 7.56 -2.39 -0.02 1.55 16 35 H 0.05 1.24 7.39 -2.39 -0.02 1.22 16 36 H 0.40 14.08 7.96 -92.71 -0.74 13.34 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 3.71 6.07 -2.38 -0.01 3.70 16 40 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.14 2.82 7.95 -2.91 -0.02 2.79 16 42 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -69.70 346.13 4.47 -65.24 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.26 Total: 27.44 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.20 Total: -21.88 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.97 Total: -84.93 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.04 Total: -30.08 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.70 4.47 -65.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068122703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.126 kcal (2) G-P(sol) polarization free energy of solvation -69.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds