Wall clock time and date at job start Mon Mar 30 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47609 * 2 1 4 4 C 1.38234 * 120.00191 * 89.99845 * 3 2 1 5 5 C 1.38228 * 120.00190 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99964 * 359.95406 * 5 4 3 7 7 C 1.50703 * 120.00177 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.47197 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.47206 * 119.99675 * 7 6 5 10 10 C 1.50699 * 109.47404 * 240.00133 * 7 6 5 11 11 O 1.21279 * 119.99997 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00179 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00376 * 179.97438 * 12 10 7 14 14 H 1.09002 * 109.46725 * 35.00314 * 13 12 10 15 15 C 1.52997 * 109.47188 * 275.00479 * 13 12 10 16 16 C 1.50697 * 109.47081 * 155.00043 * 13 12 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46980 * 89.99582 * 20 18 16 22 22 H 1.48493 * 109.47135 * 209.99651 * 20 18 16 23 23 H 1.48498 * 109.47274 * 330.00048 * 20 18 16 24 24 C 1.38234 * 120.00105 * 0.27813 * 6 5 4 25 25 C 1.38234 * 119.99868 * 269.98184 * 3 2 1 26 26 H 1.08999 * 109.46792 * 300.00457 * 1 2 3 27 27 H 1.08998 * 109.47005 * 60.00063 * 1 2 3 28 28 H 1.08994 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47256 * 239.99745 * 2 1 3 30 30 H 1.08995 * 109.47103 * 120.00444 * 2 1 3 31 31 H 1.07999 * 119.99821 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.00372 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47524 * 300.00651 * 9 7 6 34 34 H 1.09008 * 109.46947 * 60.00372 * 9 7 6 35 35 H 1.09001 * 109.47403 * 180.02562 * 9 7 6 36 36 H 0.97006 * 119.99702 * 0.02562 * 12 10 7 37 37 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 38 38 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 39 39 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 40 40 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.00230 * 179.72824 * 24 6 5 42 42 H 1.08001 * 120.00503 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2629 2.0724 1.1971 5 6 2.7233 3.3758 1.1971 6 6 2.9541 4.0272 0.0000 7 6 3.4566 5.4480 -0.0001 8 1 3.5778 5.7906 1.0277 9 6 4.8047 5.5122 -0.7208 10 6 2.4643 6.3318 -0.7109 11 8 1.4488 5.8550 -1.1717 12 7 2.7048 7.6523 -0.8337 13 6 1.7405 8.5113 -1.5252 14 1 0.7295 8.1552 -1.3273 15 6 2.0097 8.4714 -3.0308 16 6 1.8811 9.9266 -1.0271 17 1 2.6156 10.1627 -0.2714 18 6 1.0719 10.9202 -1.5363 19 7 0.1779 10.6329 -2.4569 20 14 1.2466 12.6747 -0.9194 21 1 2.2384 13.3971 -1.7559 22 1 -0.0668 13.3623 -1.0042 23 1 1.7073 12.6596 0.4922 24 6 2.7191 3.3772 -1.1972 25 6 2.2633 2.0722 -1.1972 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0824 1.5635 2.1324 32 1 2.9029 3.8851 2.1324 33 1 5.5224 4.8730 -0.2067 34 1 4.6839 5.1695 -1.7485 35 1 5.1683 6.5398 -0.7205 36 1 3.5169 8.0337 -0.4648 37 1 3.0208 8.8275 -3.2287 38 1 1.2919 9.1102 -3.5453 39 1 1.9081 7.4476 -3.3911 40 1 -0.3916 11.3318 -2.8149 41 1 2.8953 3.8877 -2.1324 42 1 2.0839 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068122707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:44 Heat of formation + Delta-G solvation = -57.093872 kcal Electronic energy + Delta-G solvation = -20979.894739 eV Core-core repulsion = 17922.945194 eV Total energy + Delta-G solvation = -3056.949545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22130 -39.82968 -36.80992 -35.88886 -34.41424 -33.40239 -31.78321 -30.75975 -29.25579 -27.34943 -25.83741 -24.34194 -23.63629 -22.70999 -21.50543 -20.76860 -18.85381 -17.60598 -17.43670 -16.87324 -16.42818 -16.23969 -15.74814 -15.56631 -14.85617 -14.72232 -14.53354 -14.34427 -14.17489 -14.00817 -13.78490 -13.63342 -13.18478 -13.01270 -12.88382 -12.74349 -12.68284 -12.47136 -12.30161 -12.28112 -12.14097 -11.98700 -11.63704 -11.60332 -11.10503 -10.66687 -10.50984 -9.74878 -9.70908 -9.37132 -8.18043 -6.35969 0.44810 0.57754 1.44316 1.45245 1.55907 1.86069 2.35171 2.60213 2.99340 3.12256 3.64124 3.86085 3.96978 4.08066 4.15991 4.25488 4.32347 4.43982 4.53608 4.60636 4.70875 4.73761 4.74874 4.87066 4.90119 4.94070 5.06905 5.08145 5.09171 5.18805 5.23668 5.27837 5.39325 5.43906 5.56335 5.61661 5.69045 5.76629 5.77080 5.91563 6.09679 6.18014 6.72556 6.99880 7.32259 7.59433 8.88280 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.003590 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.364396 B = 7797.084154 C = 8054.108708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.082 4.082 7 C -0.065 4.065 8 H 0.123 0.877 9 C -0.133 4.133 10 C 0.501 3.499 11 O -0.593 6.593 12 N -0.704 5.704 13 C 0.272 3.728 14 H -0.006 1.006 15 C -0.132 4.132 16 C -0.547 4.547 17 H 0.074 0.926 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.974 3.026 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.263 1.263 24 C -0.100 4.100 25 C -0.134 4.134 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.404 0.596 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 -16.992 7.364 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.083 4.083 7 C -0.086 4.086 8 H 0.141 0.859 9 C -0.190 4.190 10 C 0.288 3.712 11 O -0.475 6.475 12 N -0.353 5.353 13 C 0.168 3.832 14 H 0.012 0.988 15 C -0.191 4.191 16 C -0.585 4.585 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.187 1.187 24 C -0.118 4.118 25 C -0.152 4.152 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.240 0.760 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.253 -17.219 6.919 20.310 hybrid contribution -0.189 1.397 -0.176 1.421 sum 8.064 -15.822 6.743 18.995 Atomic orbital electron populations 1.21751 0.94822 1.02379 1.01477 1.20562 0.96005 0.91205 1.03871 1.20196 0.98554 0.97528 0.92808 1.21247 1.00052 0.94732 0.98383 1.21274 0.99434 0.95509 0.97377 1.19489 1.00595 0.94190 0.93990 1.20348 0.95086 0.91018 1.02116 0.85886 1.21766 0.93443 1.03793 0.99997 1.21219 0.87232 0.83107 0.79675 1.90646 1.30394 1.75053 1.51366 1.46256 1.24712 1.07303 1.57050 1.18297 0.87191 0.88505 0.89200 0.98800 1.21882 1.00637 0.97501 0.99039 1.21564 1.20862 0.92636 1.23445 0.90751 1.25833 0.94330 1.03710 0.94835 1.70060 1.22073 1.34763 1.28823 0.85322 0.77390 0.78416 0.79071 1.19567 1.21308 1.18696 1.20924 0.98658 0.94797 0.97453 1.21165 1.00802 0.94630 0.98634 0.93083 0.93988 0.90609 0.90328 0.89394 0.83779 0.84192 0.89144 0.93301 0.90544 0.76024 0.93994 0.91634 0.97194 0.92579 0.88250 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.90 71.98 0.71 -1.82 16 2 C -0.08 -1.33 6.06 29.85 0.18 -1.15 16 3 C -0.09 -2.13 5.13 -19.87 -0.10 -2.23 16 4 C -0.13 -2.87 9.70 22.27 0.22 -2.65 16 5 C -0.12 -2.98 9.67 22.27 0.22 -2.76 16 6 C -0.08 -2.45 4.40 -19.87 -0.09 -2.54 16 7 C -0.06 -1.85 2.90 -12.29 -0.04 -1.89 16 8 H 0.12 2.89 7.88 -2.38 -0.02 2.87 16 9 C -0.13 -3.03 8.90 71.98 0.64 -2.38 16 10 C 0.50 20.41 6.98 87.66 0.61 21.02 16 11 O -0.59 -30.05 14.75 -3.03 -0.04 -30.10 16 12 N -0.70 -29.55 4.96 -446.11 -2.21 -31.77 16 13 C 0.27 14.36 2.56 44.24 0.11 14.48 16 14 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 15 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 16 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 18 C 0.01 0.69 5.30 84.66 0.45 1.14 16 19 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 20 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.10 -3.18 7.92 22.27 0.18 -3.00 16 25 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 30 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.14 2.82 7.95 -2.91 -0.02 2.80 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.24 7.40 -2.38 -0.02 1.22 16 35 H 0.08 1.57 7.57 -2.39 -0.02 1.55 16 36 H 0.40 14.09 7.96 -92.70 -0.74 13.35 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 3.71 6.07 -2.39 -0.01 3.70 16 39 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.10 3.42 7.52 -2.91 -0.02 3.40 16 42 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -69.82 346.13 4.46 -65.36 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.26 Total: 27.92 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.20 Total: -22.40 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.97 Total: -84.98 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.04 Total: -30.10 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.82 4.46 -65.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068122707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.262 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds