Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.50703 * 109.46981 * 299.97986 * 7 6 5 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00251 * 179.97438 * 12 10 7 14 14 H 1.09003 * 109.46808 * 35.00054 * 13 12 10 15 15 C 1.53001 * 109.47243 * 275.00025 * 13 12 10 16 16 C 1.50695 * 109.47351 * 155.00093 * 13 12 10 17 17 H 1.08002 * 120.00113 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00291 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99889 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00149 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47123 * 119.99768 * 20 18 16 23 23 H 1.48499 * 109.47172 * 240.00091 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 34 34 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 35 35 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 36 36 H 0.97002 * 119.99972 * 0.02562 * 12 10 7 37 37 H 1.08999 * 109.47054 * 300.00238 * 15 13 12 38 38 H 1.09005 * 109.46864 * 60.00008 * 15 13 12 39 39 H 1.08992 * 109.47194 * 179.97438 * 15 13 12 40 40 H 0.96993 * 119.99723 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 42 42 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.7834 5.5127 -0.7096 11 8 5.2746 4.5038 -1.1696 12 7 5.4252 6.6915 -0.8331 13 6 6.7163 6.7539 -1.5224 14 1 6.7246 6.0374 -2.3438 15 6 7.8370 6.4139 -0.5378 16 6 6.9292 8.1433 -2.0655 17 1 6.1777 8.9038 -1.9129 18 6 8.0830 8.4435 -2.7581 19 7 8.9980 7.5174 -2.9444 20 14 8.3465 10.1657 -3.4320 21 1 7.1779 11.0155 -3.0894 22 1 9.5743 10.7489 -2.8337 23 1 8.4973 10.1020 -4.9079 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 2.3273 6.0019 -1.7499 34 1 1.4869 6.2984 -0.2090 35 1 2.8103 7.3727 -0.7227 36 1 5.0325 7.4984 -0.4649 37 1 7.8287 7.1303 0.2837 38 1 7.6830 5.4088 -0.1450 39 1 8.7976 6.4599 -1.0507 40 1 9.8098 7.7287 -3.4314 41 1 2.9031 3.8851 2.1324 42 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068122709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = -39.585293 kcal Electronic energy + Delta-G solvation = -20935.500750 eV Core-core repulsion = 17879.310434 eV Total energy + Delta-G solvation = -3056.190316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90994 -38.47227 -35.18528 -34.50364 -32.80877 -32.03550 -30.74851 -29.02741 -28.10807 -25.26087 -24.76378 -23.15926 -22.57899 -21.20058 -20.17329 -19.17053 -17.16929 -16.27395 -15.77708 -15.35319 -15.24871 -14.85039 -14.35323 -14.05710 -13.74498 -13.63453 -13.27894 -13.19241 -12.96002 -12.50579 -12.40651 -12.20204 -11.88428 -11.62954 -11.51959 -11.37588 -11.14529 -11.07587 -10.93027 -10.75044 -10.64547 -10.60127 -10.28286 -10.23112 -9.02830 -8.95016 -8.66175 -8.54186 -8.31858 -7.86355 -6.11686 -4.20865 1.49813 1.62773 3.23522 3.31245 3.33834 3.45031 3.84281 4.22931 4.42741 4.70090 4.82182 4.88494 5.08720 5.15219 5.20499 5.25217 5.33266 5.38434 5.46381 5.58036 5.63515 5.65588 5.75938 5.86684 5.89631 5.98927 6.03499 6.20185 6.24171 6.29253 6.59705 6.75583 6.83858 6.86234 6.99057 7.17356 7.19563 7.49620 7.59012 7.71305 7.93615 8.16648 8.70524 8.80317 9.17739 9.47109 10.94315 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037738 B = 0.003446 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.781546 B = 8123.560609 C = 8270.056060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.060 4.060 7 C -0.077 4.077 8 H 0.097 0.903 9 C -0.138 4.138 10 C 0.505 3.495 11 O -0.546 6.546 12 N -0.709 5.709 13 C 0.265 3.735 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.113 4.113 25 C -0.124 4.124 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.388 0.612 37 H 0.026 0.974 38 H 0.014 0.986 39 H 0.089 0.911 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 -8.201 7.365 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.138 4.138 5 C -0.096 4.096 6 C -0.060 4.060 7 C -0.099 4.099 8 H 0.115 0.885 9 C -0.195 4.195 10 C 0.289 3.711 11 O -0.425 6.425 12 N -0.357 5.357 13 C 0.163 3.837 14 H 0.065 0.935 15 C -0.206 4.206 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.131 4.131 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.220 0.780 37 H 0.045 0.955 38 H 0.033 0.967 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.280 -8.939 6.924 19.009 hybrid contribution 0.212 1.375 -0.147 1.399 sum -15.069 -7.564 6.777 18.172 Atomic orbital electron populations 1.21741 0.94988 1.01363 1.02160 1.20512 0.95930 0.93025 1.02620 1.19806 0.99882 0.95973 0.93314 1.20949 1.00668 0.94916 0.97302 1.20922 0.96364 0.94448 0.97839 1.19357 0.98557 0.94689 0.93419 1.20372 0.94461 0.93671 1.01372 0.88526 1.21762 0.98012 0.99022 1.00745 1.20250 0.85860 0.84377 0.80599 1.90672 1.68010 1.34546 1.49223 1.46509 1.23671 1.08237 1.57253 1.18720 0.77030 0.97306 0.90645 0.93457 1.22076 1.03408 0.96349 0.98732 1.21260 1.04255 0.95703 1.35838 0.92059 1.24899 0.95654 0.97508 0.95725 1.69917 1.08747 1.32843 1.40590 0.86402 0.78147 0.83879 0.78715 1.19738 1.20891 1.20889 1.20958 1.00009 0.94905 0.97195 1.20857 1.01249 0.94828 0.97222 0.92679 0.92662 0.92579 0.91301 0.91204 0.86471 0.86220 0.91946 0.91892 0.91514 0.78009 0.95526 0.96706 0.89202 0.92654 0.86383 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.80 6.07 -27.88 -0.17 -0.97 16 3 C -0.09 -1.12 5.13 -104.62 -0.54 -1.65 16 4 C -0.12 -1.65 9.70 -39.58 -0.38 -2.04 16 5 C -0.08 -1.21 7.93 -39.58 -0.31 -1.52 16 6 C -0.06 -0.91 4.40 -104.62 -0.46 -1.37 16 7 C -0.08 -1.15 2.90 -92.92 -0.27 -1.42 16 8 H 0.10 1.24 7.88 -51.93 -0.41 0.83 16 9 C -0.14 -1.72 8.90 37.16 0.33 -1.39 16 10 C 0.51 10.14 6.99 -10.98 -0.08 10.06 16 11 O -0.55 -13.23 14.77 5.56 0.08 -13.15 16 12 N -0.71 -14.79 4.96 -54.93 -0.27 -15.06 16 13 C 0.26 6.80 2.56 -69.09 -0.18 6.62 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 16 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -25.07 11.32 55.43 0.63 -24.45 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.11 -1.52 9.67 -39.58 -0.38 -1.90 16 25 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.94 7.52 -52.49 -0.39 1.55 16 33 H 0.06 0.83 7.39 -51.93 -0.38 0.44 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.79 7.56 -51.93 -0.39 0.39 16 36 H 0.39 6.97 7.96 -40.82 -0.32 6.65 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 1.34 7.95 -52.49 -0.42 0.93 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -31.12 346.14 -8.67 -39.78 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.79 Total: 6.48 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.51 Total: -14.47 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.35 Total: -39.51 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.12 -8.67 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068122709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.198 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds