Wall clock time and date at job start Mon Mar 30 2020 02:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38359 * 119.85271 * 59.72434 * 4 2 1 6 6 C 1.37963 * 120.14445 * 179.72287 * 5 4 2 7 7 C 1.39579 * 119.85066 * 0.54687 * 6 5 4 8 8 C 1.47846 * 120.14109 * 179.70273 * 7 6 5 9 9 O 1.21553 * 119.99912 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46969 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46946 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46900 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00205 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99726 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99997 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47226 * 119.99839 * 18 16 14 21 21 H 1.48500 * 109.47310 * 240.00547 * 18 16 14 22 22 C 1.39568 * 119.71026 * 359.72786 * 7 6 5 23 23 C 1.37963 * 119.85740 * 359.97438 * 22 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08003 * 119.92630 * 0.02562 * 5 4 2 32 32 H 1.08001 * 120.07046 * 180.24913 * 6 5 4 33 33 H 0.97004 * 119.99463 * 0.02562 * 10 8 7 34 34 H 1.09006 * 109.46711 * 300.00325 * 11 10 8 35 35 H 1.08998 * 109.46835 * 60.00095 * 11 10 8 36 36 H 1.09003 * 109.46713 * 299.99465 * 12 11 10 37 37 H 1.08998 * 109.47724 * 60.00076 * 12 11 10 38 38 H 1.08998 * 109.46825 * 300.00005 * 13 12 11 39 39 H 1.08998 * 109.46899 * 59.99507 * 13 12 11 40 40 H 0.96997 * 119.99747 * 179.97438 * 17 16 14 41 41 H 1.08009 * 120.07341 * 179.97438 * 22 7 6 42 42 H 1.07992 * 119.93128 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8807 -3.6161 7 6 2.9554 -2.0157 -3.4916 8 6 3.4478 -2.7129 -4.6988 9 8 4.1463 -3.7014 -4.5873 10 7 3.1222 -2.2524 -5.9229 11 6 3.6105 -2.9430 -7.1191 12 6 3.1010 -2.2213 -8.3683 13 6 3.6105 -2.9429 -9.6176 14 6 3.1081 -2.2324 -10.8479 15 1 2.4871 -1.3544 -10.7488 16 6 3.4412 -2.7034 -12.1003 17 7 4.1970 -3.7730 -12.2210 18 14 2.8179 -1.8233 -13.6255 19 1 1.9919 -0.6573 -13.2213 20 1 3.9725 -1.3561 -14.4340 21 1 1.9931 -2.7571 -14.4336 22 6 3.2908 -2.4899 -2.2225 23 6 2.8280 -1.8347 -1.1000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.0670 0.6377 -2.5805 32 1 1.8892 -0.5088 -4.5953 33 1 2.5650 -1.4633 -6.0118 34 1 4.7006 -2.9429 -7.1190 35 1 3.2472 -3.9706 -7.1191 36 1 2.0110 -2.2211 -8.3685 37 1 3.4646 -1.1938 -8.3681 38 1 4.7005 -2.9436 -9.6175 39 1 3.2466 -3.9703 -9.6175 40 1 4.4310 -4.1045 -13.1020 41 1 3.9112 -3.3680 -2.1193 42 1 3.0865 -2.2008 -0.1175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:49 Heat of formation + Delta-G solvation = -46.831532 kcal Electronic energy + Delta-G solvation = -19891.341350 eV Core-core repulsion = 16834.836814 eV Total energy + Delta-G solvation = -3056.504536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31290 -38.82854 -35.63477 -35.36944 -33.36932 -31.64361 -30.94056 -30.08518 -27.52759 -26.81366 -24.45194 -22.98925 -22.80537 -20.94064 -20.54729 -19.84596 -17.86102 -16.53209 -16.29819 -15.56088 -15.30769 -15.08145 -14.90974 -14.45842 -14.14245 -14.07914 -13.84333 -13.74181 -13.44935 -12.86451 -12.74135 -12.34530 -12.29323 -11.86244 -11.72436 -11.62233 -11.49967 -11.18869 -10.97518 -10.92698 -10.73563 -10.57994 -9.95031 -9.87985 -9.40247 -9.20693 -9.11245 -9.02152 -8.71685 -8.38087 -6.02453 -4.05512 0.69657 1.16308 2.86571 3.29576 3.35143 3.37563 3.41180 3.75532 4.25383 4.38671 4.43806 4.67317 4.73321 4.79580 4.85764 5.04456 5.12098 5.23896 5.24446 5.33407 5.44186 5.47749 5.53099 5.63165 5.74601 5.77085 5.78401 5.82295 5.84399 6.10176 6.15356 6.20542 6.32228 6.46242 6.58884 6.66393 6.82593 6.99152 7.63160 7.69068 7.75450 7.96380 8.34612 8.38816 9.01361 9.58719 11.08899 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031934 B = 0.002597 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.597594 B =10778.977538 C =11453.910982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.057 4.057 5 C -0.123 4.123 6 C -0.084 4.084 7 C -0.133 4.133 8 C 0.550 3.450 9 O -0.542 6.542 10 N -0.721 5.721 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.059 4.059 23 C -0.127 4.127 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.397 0.603 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.136 0.864 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 9.295 25.675 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.057 4.057 5 C -0.141 4.141 6 C -0.103 4.103 7 C -0.136 4.136 8 C 0.337 3.663 9 O -0.421 6.421 10 N -0.371 5.371 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.077 4.077 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.154 0.846 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.985 8.462 25.579 27.599 hybrid contribution -0.546 0.774 -1.066 1.426 sum -6.531 9.236 24.513 26.997 Atomic orbital electron populations 1.21868 0.94066 1.02209 1.02101 1.20194 0.96168 0.96202 0.95283 1.21866 1.01382 0.94892 1.02099 1.20076 0.95926 0.94904 0.94810 1.20901 1.01042 1.00570 0.91604 1.21345 0.95668 0.94142 0.99100 1.20061 1.01849 0.97683 0.94053 1.18312 0.80470 0.84127 0.83385 1.90764 1.38198 1.26219 1.86883 1.46149 1.53112 1.31865 1.05995 1.21686 0.99379 0.96597 0.82992 1.21896 1.00216 0.99524 0.94270 1.19037 0.96710 0.95713 0.89981 1.21237 1.31548 1.12304 0.90901 0.92592 1.25040 0.95182 0.95078 0.99232 1.69976 1.36835 1.22969 1.23476 0.86523 0.78632 0.79652 0.83098 1.19764 1.20991 1.20996 1.21283 0.96821 0.98836 0.90802 1.21041 0.98966 0.95879 0.98650 0.92402 0.92276 0.92268 0.90284 0.92402 0.92278 0.92271 0.85547 0.85460 0.76787 0.91593 0.91583 0.92699 0.92694 0.96229 0.96232 0.92971 0.84645 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.00 37.16 0.33 -0.49 16 2 C -0.06 -0.38 3.09 -91.77 -0.28 -0.66 16 3 C -0.15 -0.83 9.01 37.16 0.33 -0.49 16 4 C -0.06 -0.48 4.79 -104.53 -0.50 -0.98 16 5 C -0.12 -1.07 8.69 -39.64 -0.34 -1.42 16 6 C -0.08 -0.85 9.54 -39.18 -0.37 -1.23 16 7 C -0.13 -1.70 5.87 -104.97 -0.62 -2.31 16 8 C 0.55 8.79 7.77 -12.33 -0.10 8.69 16 9 O -0.54 -10.65 16.35 5.32 0.09 -10.57 16 10 N -0.72 -10.83 5.51 -61.25 -0.34 -11.17 16 11 C 0.12 2.09 5.67 -4.04 -0.02 2.06 16 12 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 23 C -0.13 -1.18 9.65 -39.64 -0.38 -1.56 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.33 7.36 -51.93 -0.38 -0.05 16 27 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.13 0.85 7.08 -52.48 -0.37 0.48 16 32 H 0.13 1.07 6.41 -52.49 -0.34 0.73 16 33 H 0.40 4.81 6.51 -40.82 -0.27 4.54 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 1.61 7.65 -52.48 -0.40 1.21 16 42 H 0.13 0.89 7.94 -52.49 -0.42 0.47 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -32.58 349.16 -9.03 -41.61 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.73 Total: -0.57 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.02 Total: -14.90 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.40 Total: -37.32 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.58 -9.03 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.221 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds