Wall clock time and date at job start Mon Mar 30 2020 02:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38359 * 119.85271 * 59.72434 * 4 2 1 6 6 C 1.37963 * 120.14445 * 179.72287 * 5 4 2 7 7 C 1.39579 * 119.85066 * 0.54687 * 6 5 4 8 8 C 1.47846 * 120.14109 * 179.70273 * 7 6 5 9 9 O 1.21553 * 119.99912 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46969 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46946 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46900 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00205 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99726 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99997 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47226 * 119.99839 * 18 16 14 21 21 H 1.48500 * 109.47310 * 240.00547 * 18 16 14 22 22 C 1.39568 * 119.71026 * 359.72786 * 7 6 5 23 23 C 1.37963 * 119.85740 * 359.97438 * 22 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08003 * 119.92630 * 0.02562 * 5 4 2 32 32 H 1.08001 * 120.07046 * 180.24913 * 6 5 4 33 33 H 0.97004 * 119.99463 * 0.02562 * 10 8 7 34 34 H 1.09006 * 109.46711 * 300.00325 * 11 10 8 35 35 H 1.08998 * 109.46835 * 60.00095 * 11 10 8 36 36 H 1.09003 * 109.46713 * 299.99465 * 12 11 10 37 37 H 1.08998 * 109.47724 * 60.00076 * 12 11 10 38 38 H 1.08998 * 109.46825 * 300.00005 * 13 12 11 39 39 H 1.08998 * 109.46899 * 59.99507 * 13 12 11 40 40 H 0.96997 * 119.99747 * 179.97438 * 17 16 14 41 41 H 1.08009 * 120.07341 * 179.97438 * 22 7 6 42 42 H 1.07992 * 119.93128 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8807 -3.6161 7 6 2.9554 -2.0157 -3.4916 8 6 3.4478 -2.7129 -4.6988 9 8 4.1463 -3.7014 -4.5873 10 7 3.1222 -2.2524 -5.9229 11 6 3.6105 -2.9430 -7.1191 12 6 3.1010 -2.2213 -8.3683 13 6 3.6105 -2.9429 -9.6176 14 6 3.1081 -2.2324 -10.8479 15 1 2.4871 -1.3544 -10.7488 16 6 3.4412 -2.7034 -12.1003 17 7 4.1970 -3.7730 -12.2210 18 14 2.8179 -1.8233 -13.6255 19 1 1.9919 -0.6573 -13.2213 20 1 3.9725 -1.3561 -14.4340 21 1 1.9931 -2.7571 -14.4336 22 6 3.2908 -2.4899 -2.2225 23 6 2.8280 -1.8347 -1.1000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.0670 0.6377 -2.5805 32 1 1.8892 -0.5088 -4.5953 33 1 2.5650 -1.4633 -6.0118 34 1 4.7006 -2.9429 -7.1190 35 1 3.2472 -3.9706 -7.1191 36 1 2.0110 -2.2211 -8.3685 37 1 3.4646 -1.1938 -8.3681 38 1 4.7005 -2.9436 -9.6175 39 1 3.2466 -3.9703 -9.6175 40 1 4.4310 -4.1045 -13.1020 41 1 3.9112 -3.3680 -2.1193 42 1 3.0865 -2.2008 -0.1175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:49 Heat of formation + Delta-G solvation = -65.607449 kcal Electronic energy + Delta-G solvation = -19892.155535 eV Core-core repulsion = 16834.836814 eV Total energy + Delta-G solvation = -3057.318721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32356 -39.83165 -37.04426 -36.19460 -35.24780 -33.22696 -31.89984 -31.01868 -28.57219 -27.93268 -25.72201 -24.33434 -23.70132 -22.34739 -21.79320 -20.73503 -19.00909 -18.45961 -17.39630 -16.75213 -16.58414 -16.40874 -15.88088 -15.83483 -15.46749 -14.96365 -14.65205 -14.42070 -14.35815 -14.11916 -13.77470 -13.65693 -13.61783 -13.24271 -12.86454 -12.77341 -12.57502 -12.38240 -12.25169 -11.99311 -11.81098 -11.70430 -11.60616 -11.51041 -11.25076 -10.96483 -10.56935 -10.24633 -9.96476 -9.68476 -8.20211 -6.31765 -0.17534 0.40587 1.41683 1.41873 1.55166 1.79960 2.11380 2.42184 2.85226 3.13667 3.58420 3.77074 3.83233 3.98849 4.12311 4.18001 4.19656 4.34647 4.41918 4.50129 4.52929 4.53234 4.86593 4.87674 4.91237 4.93420 4.96892 5.04598 5.06419 5.14501 5.17407 5.30534 5.36181 5.39244 5.42281 5.43740 5.51108 5.66543 5.68845 5.83106 5.92602 6.21107 6.49416 6.85860 7.13840 7.37908 8.92228 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031934 B = 0.002597 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.597594 B =10778.977538 C =11453.910982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.145 4.145 4 C -0.049 4.049 5 C -0.122 4.122 6 C -0.081 4.081 7 C -0.158 4.158 8 C 0.548 3.452 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.129 3.871 12 C -0.101 4.101 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.073 4.073 23 C -0.128 4.128 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.414 0.586 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.122 0.878 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 12.094 26.820 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.049 4.049 5 C -0.140 4.140 6 C -0.100 4.100 7 C -0.161 4.161 8 C 0.338 3.662 9 O -0.471 6.471 10 N -0.361 5.361 11 C 0.005 3.995 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.092 4.092 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.252 0.748 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.995 11.302 26.740 30.111 hybrid contribution 0.063 -0.087 -1.313 1.317 sum -7.932 11.216 25.428 28.901 Atomic orbital electron populations 1.21871 0.93353 1.02057 1.02907 1.20258 0.96640 0.96434 0.94372 1.21869 1.00990 0.94421 1.02903 1.20442 0.94468 0.94135 0.95882 1.21217 1.00703 1.00984 0.91074 1.21540 0.94721 0.93065 1.00665 1.19863 1.04280 0.99286 0.92655 1.18877 0.79510 0.83556 0.84300 1.90732 1.40428 1.28425 1.87543 1.45898 1.53114 1.32154 1.04901 1.21292 0.98423 0.96022 0.83778 1.21604 1.00851 0.99423 0.92040 1.18952 0.95013 0.94933 0.92598 1.21702 1.31494 1.12682 0.91842 0.91432 1.26052 0.95315 0.95836 1.03059 1.70122 1.38290 1.24753 1.24450 0.85343 0.78163 0.78711 0.78477 1.18104 1.20581 1.20596 1.21323 0.97400 0.99034 0.91462 1.21270 0.98657 0.95927 0.98734 0.93037 0.91009 0.92014 0.89435 0.93041 0.92031 0.91002 0.82978 0.83715 0.74787 0.93092 0.93084 0.91202 0.91193 0.98950 0.98954 0.92811 0.86012 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.00 71.98 0.65 -0.54 16 2 C -0.06 -0.55 3.09 -11.54 -0.04 -0.59 16 3 C -0.14 -1.19 9.01 71.98 0.65 -0.54 16 4 C -0.05 -0.70 4.79 -19.81 -0.09 -0.80 16 5 C -0.12 -1.77 8.69 22.23 0.19 -1.58 16 6 C -0.08 -1.49 9.54 22.53 0.21 -1.28 16 7 C -0.16 -3.97 5.87 -20.09 -0.12 -4.09 16 8 C 0.55 17.90 7.77 86.79 0.67 18.57 16 9 O -0.59 -24.35 16.35 -3.88 -0.06 -24.41 16 10 N -0.71 -21.14 5.51 -465.97 -2.57 -23.71 16 11 C 0.13 4.74 5.67 86.38 0.49 5.23 16 12 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 13 C 0.02 1.19 4.97 29.85 0.15 1.34 16 14 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 15 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 16 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 18 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.07 -1.71 9.60 22.53 0.22 -1.49 16 23 C -0.13 -2.18 9.65 22.23 0.21 -1.96 16 24 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.48 7.36 -2.39 -0.02 0.46 16 27 H 0.09 0.71 7.87 -2.39 -0.02 0.69 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.48 7.39 -2.39 -0.02 0.46 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.15 1.43 7.08 -2.91 -0.02 1.41 16 32 H 0.15 2.03 6.41 -2.91 -0.02 2.01 16 33 H 0.41 9.35 6.51 -92.71 -0.60 8.75 16 34 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.12 3.09 7.65 -2.91 -0.02 3.06 16 42 H 0.15 1.80 7.94 -2.91 -0.02 1.77 16 Total: -1.00 -72.14 349.16 4.13 -68.01 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.39 Total: 12.73 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.06 Total: -21.29 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.28 Total: -80.95 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.41 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.14 4.13 -68.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.402 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds