Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47258 * 2 1 4 4 C 1.50704 * 109.47307 * 239.99752 * 2 1 3 5 5 O 1.21279 * 120.00245 * 245.52236 * 4 2 1 6 6 N 1.34772 * 119.99635 * 65.52227 * 4 2 1 7 7 C 1.46503 * 119.99974 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47331 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47550 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47508 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00023 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99816 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99767 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00404 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47466 * 89.99854 * 14 12 10 16 16 H 1.48508 * 109.47412 * 209.99953 * 14 12 10 17 17 H 1.48505 * 109.47024 * 329.99785 * 14 12 10 18 18 C 1.50700 * 109.47142 * 119.99802 * 2 1 3 19 19 C 1.38243 * 120.00066 * 185.62662 * 18 2 1 20 20 C 1.38236 * 120.00094 * 180.02562 * 19 18 2 21 21 C 1.38235 * 119.99856 * 359.94850 * 20 19 18 22 22 C 1.38240 * 119.99969 * 0.28463 * 21 20 19 23 23 C 1.38230 * 119.99995 * 359.53220 * 22 21 20 24 24 H 1.08998 * 109.47219 * 299.99425 * 1 2 3 25 25 H 1.08991 * 109.47523 * 60.00084 * 1 2 3 26 26 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47627 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47228 * 300.00053 * 3 2 1 29 29 H 1.09004 * 109.47355 * 59.99869 * 3 2 1 30 30 H 0.97002 * 120.00349 * 0.02562 * 6 4 2 31 31 H 1.09003 * 109.47026 * 300.00211 * 7 6 4 32 32 H 1.09002 * 109.46979 * 60.00479 * 7 6 4 33 33 H 1.09007 * 109.46831 * 300.00380 * 8 7 6 34 34 H 1.08996 * 109.47633 * 59.99781 * 8 7 6 35 35 H 1.09003 * 109.46646 * 299.99717 * 9 8 7 36 36 H 1.09004 * 109.46911 * 59.99375 * 9 8 7 37 37 H 0.97003 * 120.00024 * 179.97438 * 13 12 10 38 38 H 1.07997 * 119.99507 * 359.97438 * 19 18 2 39 39 H 1.07992 * 119.99958 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.99865 * 180.02562 * 21 20 19 41 41 H 1.08000 * 119.99394 * 179.72272 * 22 21 20 42 42 H 1.08000 * 119.99744 * 180.21405 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6448 -1.7516 -1.1220 6 7 1.8010 -0.1888 -2.4514 7 6 2.2898 -0.8791 -3.6475 8 6 1.8968 -0.0819 -4.8929 9 6 2.4067 -0.8031 -6.1421 10 6 2.0190 -0.0183 -7.3688 11 1 1.4640 0.9026 -7.2676 12 6 2.3729 -0.4759 -8.6203 13 7 2.0341 0.2088 -9.6908 14 14 3.3322 -2.0691 -8.7955 15 1 2.3852 -3.2061 -8.9202 16 1 4.1869 -2.0015 -10.0081 17 1 4.1874 -2.2663 -7.5975 18 6 2.0323 -0.7104 1.2305 19 6 3.3860 -0.7360 1.5096 20 6 3.8468 -1.3880 2.6380 21 6 2.9539 -2.0136 3.4879 22 6 1.6007 -1.9921 3.2062 23 6 1.1395 -1.3368 2.0799 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.3115 0.6442 -2.5382 31 1 3.3754 -0.9651 -3.5993 32 1 1.8483 -1.8744 -3.6986 33 1 0.8112 0.0045 -4.9413 34 1 2.3385 0.9132 -4.8418 35 1 3.4922 -0.8898 -6.0939 36 1 1.9646 -1.7982 -6.1931 37 1 2.2834 -0.1130 -10.5713 38 1 4.0835 -0.2472 0.8456 39 1 4.9044 -1.4084 2.8559 40 1 3.3139 -2.5227 4.3698 41 1 0.9036 -2.4847 3.8679 42 1 0.0820 -1.3171 1.8617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = -34.253553 kcal Electronic energy + Delta-G solvation = -20704.715219 eV Core-core repulsion = 17648.756104 eV Total energy + Delta-G solvation = -3055.959114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66877 -38.73822 -35.62987 -35.33901 -33.27123 -31.44808 -31.17901 -29.80101 -27.68403 -27.20386 -24.28179 -23.05058 -22.38288 -21.46703 -20.55695 -19.19613 -17.48890 -16.85577 -16.56684 -15.84124 -15.50433 -14.99428 -14.83480 -14.29999 -14.19590 -14.02555 -13.79077 -13.57491 -12.94568 -12.71290 -12.61390 -12.46336 -12.31348 -12.01668 -11.98880 -11.88164 -11.70204 -11.10542 -11.00210 -10.91411 -10.86144 -10.16915 -9.95746 -9.77420 -9.48788 -9.23998 -8.99707 -8.84495 -8.82040 -8.56656 -6.07511 -4.06256 1.22871 1.32299 2.72870 3.27671 3.30572 3.38174 3.42495 3.76961 4.26305 4.43477 4.52175 4.68377 4.85167 4.88023 4.93305 5.00273 5.26655 5.27509 5.30335 5.42654 5.45214 5.50608 5.55310 5.62240 5.64860 5.79660 5.89065 5.89622 5.92398 6.00664 6.35238 6.35626 6.40335 6.43360 6.49846 6.69344 6.78517 6.88843 7.21503 7.34958 7.63509 7.75670 8.33875 8.49165 8.96256 9.54850 11.05734 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034327 B = 0.003113 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.498966 B = 8992.876019 C = 9373.401133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.140 4.140 4 C 0.518 3.482 5 O -0.535 6.535 6 N -0.724 5.724 7 C 0.114 3.886 8 C -0.113 4.113 9 C -0.011 4.011 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.055 4.055 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.116 4.116 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 0.583 26.446 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 C -0.197 4.197 4 C 0.303 3.697 5 O -0.411 6.411 6 N -0.375 5.375 7 C -0.009 4.009 8 C -0.151 4.151 9 C -0.049 4.049 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.056 4.056 19 C -0.110 4.110 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.133 4.133 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.172 -0.180 26.297 26.324 hybrid contribution 0.286 -0.484 -0.410 0.696 sum -0.886 -0.664 25.887 25.910 Atomic orbital electron populations 1.21942 0.91989 1.02993 1.03109 1.19747 0.97393 0.96164 0.91465 1.21913 1.01917 0.92853 1.03031 1.20325 0.79714 0.85331 0.84336 1.90714 1.40520 1.23230 1.86616 1.46156 1.57968 1.27317 1.06050 1.21652 0.99275 0.96460 0.83473 1.21700 1.01067 0.99114 0.93196 1.19503 0.96404 0.96012 0.92987 1.21093 1.36252 1.09391 0.89264 0.91005 1.25024 0.95496 0.97083 0.95862 1.69911 1.46967 1.39211 0.98109 0.86779 0.80606 0.84118 0.77818 1.20237 1.21355 1.18905 1.19302 0.93667 0.98137 0.94460 1.20927 0.94890 0.98680 0.96537 1.21095 0.99568 0.98237 0.94988 1.21123 0.93559 0.99848 0.99640 1.21083 0.95713 0.99765 0.97567 1.21123 0.99728 0.97709 0.94786 0.90999 0.91425 0.91593 0.91751 0.91441 0.91182 0.76712 0.91844 0.91848 0.92138 0.92102 0.96330 0.96769 0.92687 0.86441 0.86209 0.86352 0.86226 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.11 37.15 0.26 -0.94 16 2 C -0.04 -0.47 0.72 -156.82 -0.11 -0.58 16 3 C -0.14 -1.18 8.07 37.15 0.30 -0.88 16 4 C 0.52 7.40 6.35 -10.99 -0.07 7.33 16 5 O -0.53 -9.86 15.54 5.56 0.09 -9.77 16 6 N -0.72 -9.81 5.39 -60.29 -0.32 -10.13 16 7 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 8 C -0.11 -2.08 5.27 -26.73 -0.14 -2.23 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 14 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 18 C -0.06 -0.64 4.24 -104.62 -0.44 -1.08 16 19 C -0.09 -1.09 8.37 -39.58 -0.33 -1.43 16 20 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.21 8.99 -39.59 -0.36 -1.56 16 24 H 0.07 0.48 7.78 -51.93 -0.40 0.08 16 25 H 0.07 0.51 7.97 -51.93 -0.41 0.10 16 26 H 0.07 0.60 7.25 -51.93 -0.38 0.23 16 27 H 0.06 0.58 7.09 -51.93 -0.37 0.21 16 28 H 0.07 0.50 7.27 -51.93 -0.38 0.12 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.40 4.34 7.39 -40.82 -0.30 4.04 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.12 1.37 7.25 -52.49 -0.38 0.99 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.08 5.91 -52.49 -0.31 0.77 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -33.39 341.06 -8.31 -41.70 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.67 Total: 0.82 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.65 Total: -17.91 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.45 Total: -37.08 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.39 -8.31 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.451 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds