Wall clock time and date at job start Mon Mar 30 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47258 * 2 1 4 4 C 1.50704 * 109.47307 * 239.99752 * 2 1 3 5 5 O 1.21279 * 120.00245 * 245.52236 * 4 2 1 6 6 N 1.34772 * 119.99635 * 65.52227 * 4 2 1 7 7 C 1.46503 * 119.99974 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47331 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47550 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47508 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00023 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99816 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99767 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00404 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47466 * 89.99854 * 14 12 10 16 16 H 1.48508 * 109.47412 * 209.99953 * 14 12 10 17 17 H 1.48505 * 109.47024 * 329.99785 * 14 12 10 18 18 C 1.50700 * 109.47142 * 119.99802 * 2 1 3 19 19 C 1.38243 * 120.00066 * 185.62662 * 18 2 1 20 20 C 1.38236 * 120.00094 * 180.02562 * 19 18 2 21 21 C 1.38235 * 119.99856 * 359.94850 * 20 19 18 22 22 C 1.38240 * 119.99969 * 0.28463 * 21 20 19 23 23 C 1.38230 * 119.99995 * 359.53220 * 22 21 20 24 24 H 1.08998 * 109.47219 * 299.99425 * 1 2 3 25 25 H 1.08991 * 109.47523 * 60.00084 * 1 2 3 26 26 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47627 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47228 * 300.00053 * 3 2 1 29 29 H 1.09004 * 109.47355 * 59.99869 * 3 2 1 30 30 H 0.97002 * 120.00349 * 0.02562 * 6 4 2 31 31 H 1.09003 * 109.47026 * 300.00211 * 7 6 4 32 32 H 1.09002 * 109.46979 * 60.00479 * 7 6 4 33 33 H 1.09007 * 109.46831 * 300.00380 * 8 7 6 34 34 H 1.08996 * 109.47633 * 59.99781 * 8 7 6 35 35 H 1.09003 * 109.46646 * 299.99717 * 9 8 7 36 36 H 1.09004 * 109.46911 * 59.99375 * 9 8 7 37 37 H 0.97003 * 120.00024 * 179.97438 * 13 12 10 38 38 H 1.07997 * 119.99507 * 359.97438 * 19 18 2 39 39 H 1.07992 * 119.99958 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.99865 * 180.02562 * 21 20 19 41 41 H 1.08000 * 119.99394 * 179.72272 * 22 21 20 42 42 H 1.08000 * 119.99744 * 180.21405 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6448 -1.7516 -1.1220 6 7 1.8010 -0.1888 -2.4514 7 6 2.2898 -0.8791 -3.6475 8 6 1.8968 -0.0819 -4.8929 9 6 2.4067 -0.8031 -6.1421 10 6 2.0190 -0.0183 -7.3688 11 1 1.4640 0.9026 -7.2676 12 6 2.3729 -0.4759 -8.6203 13 7 2.0341 0.2088 -9.6908 14 14 3.3322 -2.0691 -8.7955 15 1 2.3852 -3.2061 -8.9202 16 1 4.1869 -2.0015 -10.0081 17 1 4.1874 -2.2663 -7.5975 18 6 2.0323 -0.7104 1.2305 19 6 3.3860 -0.7360 1.5096 20 6 3.8468 -1.3880 2.6380 21 6 2.9539 -2.0136 3.4879 22 6 1.6007 -1.9921 3.2062 23 6 1.1395 -1.3368 2.0799 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.3115 0.6442 -2.5382 31 1 3.3754 -0.9651 -3.5993 32 1 1.8483 -1.8744 -3.6986 33 1 0.8112 0.0045 -4.9413 34 1 2.3385 0.9132 -4.8418 35 1 3.4922 -0.8898 -6.0939 36 1 1.9646 -1.7982 -6.1931 37 1 2.2834 -0.1130 -10.5713 38 1 4.0835 -0.2472 0.8456 39 1 4.9044 -1.4084 2.8559 40 1 3.3139 -2.5227 4.3698 41 1 0.9036 -2.4847 3.8679 42 1 0.0820 -1.3171 1.8617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:52 Heat of formation + Delta-G solvation = -54.554353 kcal Electronic energy + Delta-G solvation = -20705.595527 eV Core-core repulsion = 17648.756104 eV Total energy + Delta-G solvation = -3056.839423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62753 -39.67490 -37.01889 -36.28510 -35.11086 -33.22530 -31.93023 -30.64629 -28.90079 -28.33253 -25.41550 -24.38719 -23.16624 -22.51664 -22.20860 -20.28369 -19.00195 -18.20504 -17.62682 -17.00072 -16.71955 -16.26891 -15.93999 -15.61212 -15.30279 -15.02089 -14.86992 -14.76285 -14.33729 -13.89166 -13.77658 -13.59695 -13.31425 -13.19949 -13.00533 -12.76093 -12.70566 -12.61902 -12.44262 -11.93395 -11.81326 -11.71983 -11.62188 -11.59681 -11.33908 -10.77061 -10.70495 -10.09161 -9.76655 -9.61022 -8.30211 -6.33916 0.44886 0.54710 1.35779 1.37506 1.49128 1.62602 2.20622 2.35384 2.95385 3.05597 3.47367 3.74467 3.89869 4.03477 4.11880 4.17744 4.17956 4.22322 4.29350 4.48939 4.59697 4.66003 4.74841 4.81138 4.84365 4.87422 4.87693 4.92286 5.03051 5.12146 5.17388 5.21845 5.24694 5.38764 5.49414 5.54563 5.60786 5.64373 5.64803 5.71422 6.14730 6.26732 6.56763 6.74218 7.24451 7.31017 8.86182 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034327 B = 0.003113 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.498966 B = 8992.876019 C = 9373.401133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.138 4.138 4 C 0.516 3.484 5 O -0.580 6.580 6 N -0.714 5.714 7 C 0.127 3.873 8 C -0.099 4.099 9 C -0.012 4.012 10 C -0.530 4.530 11 H 0.039 0.961 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.946 3.054 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.249 1.249 18 C -0.073 4.073 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.126 4.126 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.413 0.587 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.266 0.734 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -0.013 28.467 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.196 4.196 4 C 0.303 3.697 5 O -0.459 6.459 6 N -0.366 5.366 7 C 0.003 3.997 8 C -0.137 4.137 9 C -0.050 4.050 10 C -0.568 4.568 11 H 0.057 0.943 12 C -0.191 4.191 13 N -0.591 5.591 14 Si 0.770 3.230 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.173 1.173 18 C -0.074 4.074 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.250 0.750 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.559 -0.742 28.338 28.391 hybrid contribution 0.372 -0.245 -1.006 1.100 sum -1.188 -0.988 27.333 27.376 Atomic orbital electron populations 1.21987 0.90107 1.03028 1.04803 1.19751 0.98730 0.96554 0.88987 1.21941 1.01379 0.91696 1.04539 1.21039 0.78625 0.84782 0.85220 1.90689 1.42572 1.25406 1.87273 1.45986 1.57786 1.27663 1.05172 1.21285 0.98685 0.95930 0.83799 1.21473 1.01239 0.98963 0.92028 1.19468 0.96510 0.95965 0.93091 1.21456 1.35328 1.08683 0.91302 0.94263 1.25961 0.96760 1.00879 0.95550 1.70053 1.48789 1.41402 0.98806 0.85718 0.79396 0.79597 0.78319 1.19257 1.20981 1.17308 1.19515 0.93818 0.98901 0.95140 1.21045 0.95277 0.99743 0.97240 1.21364 1.00673 0.98232 0.94902 1.21466 0.93645 0.99431 1.00152 1.21463 0.96271 0.99274 0.97622 1.21416 1.00534 0.97473 0.94916 0.88761 0.90333 0.92378 0.92735 0.90131 0.89452 0.74952 0.92755 0.92668 0.91568 0.91607 0.96246 0.96343 0.92494 0.87375 0.84914 0.84022 0.83774 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.11 71.98 0.51 -1.54 16 2 C -0.04 -0.73 0.72 -53.68 -0.04 -0.77 16 3 C -0.14 -2.09 8.07 71.98 0.58 -1.51 16 4 C 0.52 14.33 6.35 87.66 0.56 14.88 16 5 O -0.58 -21.45 15.54 -3.03 -0.05 -21.49 16 6 N -0.71 -18.40 5.39 -463.06 -2.49 -20.89 16 7 C 0.13 4.07 5.67 86.38 0.49 4.56 16 8 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.53 -30.01 9.66 25.60 0.25 -29.76 16 11 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 12 C 0.01 0.32 5.47 84.65 0.46 0.78 16 13 N -0.95 -59.28 13.96 21.44 0.30 -58.98 16 14 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 18 C -0.07 -1.63 4.24 -19.86 -0.08 -1.71 16 19 C -0.11 -2.71 8.37 22.27 0.19 -2.53 16 20 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 21 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -2.41 8.99 22.27 0.20 -2.21 16 24 H 0.09 0.96 7.78 -2.39 -0.02 0.94 16 25 H 0.08 0.96 7.97 -2.39 -0.02 0.94 16 26 H 0.06 0.94 7.25 -2.38 -0.02 0.92 16 27 H 0.05 0.93 7.09 -2.39 -0.02 0.92 16 28 H 0.08 0.99 7.27 -2.39 -0.02 0.97 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.41 8.16 7.39 -92.71 -0.68 7.47 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 36 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.11 2.62 7.25 -2.91 -0.02 2.60 16 39 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.14 2.11 5.91 -2.91 -0.02 2.09 16 Total: -1.00 -72.91 341.06 3.96 -68.95 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.26 Total: 16.19 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.07 Total: -30.20 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -2.20 Total: -79.88 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -72.91 3.96 -68.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.392 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds