Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99433 * 2 1 4 4 C 1.50696 * 109.47323 * 269.99541 * 3 2 1 5 5 H 1.07998 * 119.99724 * 0.02562 * 4 3 2 6 6 C 1.37869 * 120.00116 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00257 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 120.00056 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46937 * 59.99800 * 8 6 4 10 10 H 1.48496 * 109.47299 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46771 * 300.00022 * 8 6 4 12 12 C 1.34768 * 120.00361 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00145 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00322 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47344 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47056 * 60.00169 * 15 14 12 17 17 C 1.53002 * 109.46947 * 299.99894 * 15 14 12 18 18 C 1.50706 * 109.46962 * 180.02562 * 15 14 12 19 19 C 1.38237 * 119.99761 * 180.02562 * 18 15 14 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 359.97438 * 18 15 14 24 24 H 1.08995 * 109.47507 * 269.99941 * 1 2 3 25 25 H 1.08997 * 109.47303 * 30.00962 * 1 2 3 26 26 H 1.09008 * 109.46613 * 149.99796 * 1 2 3 27 27 H 1.09003 * 109.47155 * 29.99692 * 3 2 1 28 28 H 1.08997 * 109.46932 * 149.99245 * 3 2 1 29 29 H 0.97006 * 120.00632 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46940 * 59.99934 * 14 12 2 31 31 H 1.08999 * 109.47117 * 300.00120 * 14 12 2 32 32 H 1.09007 * 109.46732 * 179.97438 * 16 15 14 33 33 H 1.08992 * 109.46964 * 299.99962 * 16 15 14 34 34 H 1.08999 * 109.47201 * 60.00009 * 16 15 14 35 35 H 1.08993 * 109.47368 * 299.99744 * 17 15 14 36 36 H 1.09002 * 109.46902 * 60.00789 * 17 15 14 37 37 H 1.09004 * 109.47125 * 179.97438 * 17 15 14 38 38 H 1.08005 * 120.00088 * 359.96779 * 19 18 15 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0975 1.0962 -2.2416 6 6 3.1268 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6731 8 14 3.4376 3.4172 -3.4339 9 1 2.1398 3.5954 -4.1333 10 1 4.1811 4.7026 -3.4339 11 1 4.2394 2.3821 -4.1345 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3856 -2.4722 0.0005 15 6 2.3799 -3.6351 0.0018 16 6 3.2585 -3.5534 1.2517 17 6 3.2605 -3.5545 -1.2468 18 6 1.6265 -4.9403 0.0012 19 6 2.3178 -6.1374 0.0027 20 6 1.6266 -7.3345 0.0026 21 6 0.2443 -7.3346 0.0022 22 6 -0.4470 -6.1376 -0.0042 23 6 0.2441 -4.9404 0.0002 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5139 27 1 1.6082 2.0285 0.5138 28 1 3.1498 1.1386 0.5139 29 1 4.0316 4.4432 -0.8503 30 1 0.7593 -2.5302 -0.8897 31 1 0.7586 -2.5298 0.8903 32 1 3.9666 -4.3822 1.2528 33 1 3.8034 -2.6094 1.2517 34 1 2.6312 -3.6108 2.1412 35 1 2.6346 -3.6127 -2.1372 36 1 3.8055 -2.6105 -1.2467 37 1 3.9692 -4.3827 -1.2457 38 1 3.3978 -6.1373 0.0038 39 1 2.1667 -8.2698 0.0034 40 1 -0.2956 -8.2700 0.0026 41 1 -1.5270 -6.1376 -0.0090 42 1 -0.2960 -4.0051 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072053448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -16.654723 kcal Electronic energy + Delta-G solvation = -21520.850047 eV Core-core repulsion = 18465.654075 eV Total energy + Delta-G solvation = -3055.195972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20841 -38.75238 -35.88415 -34.56699 -32.61771 -31.12154 -29.87720 -28.69635 -27.14953 -26.89271 -25.56373 -23.34339 -22.61906 -22.05032 -19.44375 -18.07713 -17.26267 -16.51449 -15.93782 -15.35081 -14.93517 -14.91202 -14.78129 -14.18339 -13.80132 -13.75893 -13.38734 -13.19769 -12.90413 -12.40144 -12.24883 -12.14464 -11.96633 -11.66760 -11.49907 -11.36110 -11.19472 -11.06523 -10.81487 -10.70971 -10.60971 -10.54958 -10.30314 -10.11857 -9.61141 -8.94226 -8.66577 -8.62983 -8.42753 -7.59654 -6.03576 -4.08462 1.36385 1.37558 3.32068 3.36564 3.38249 3.46937 3.77909 3.97577 4.44960 4.70907 4.79298 4.94738 5.06837 5.11133 5.21204 5.27979 5.33032 5.48120 5.50960 5.57306 5.67555 5.78717 5.87687 5.97726 5.98280 5.99613 6.03258 6.20142 6.21629 6.30398 6.33449 6.44288 6.47893 6.68130 6.77707 6.85488 7.00234 7.08177 7.46145 7.57712 7.92932 8.24540 8.45487 8.91553 9.14364 9.56818 11.04364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030062 B = 0.004017 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.172602 B = 6967.847693 C = 7124.516879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.533 6.533 14 C -0.133 4.133 15 C -0.006 4.006 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.059 4.059 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.125 4.125 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -18.342 2.552 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.293 3.707 13 O -0.412 6.412 14 C -0.173 4.173 15 C -0.006 4.006 16 C -0.205 4.205 17 C -0.206 4.206 18 C -0.059 4.059 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.137 4.137 23 C -0.143 4.143 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.239 -18.128 2.602 19.692 hybrid contribution -0.102 0.306 -1.018 1.068 sum -7.341 -17.821 1.583 19.339 Atomic orbital electron populations 1.21633 0.81642 1.02510 1.00340 1.48182 1.06079 1.07958 1.71288 1.19266 0.92542 0.78168 0.97400 1.21395 1.36496 1.06270 0.92319 0.92562 1.24927 0.95378 0.96400 0.97359 1.69920 1.38364 1.14381 1.30774 0.86575 0.78351 0.77838 0.84755 1.20279 1.21183 1.20171 1.20249 0.88152 0.84990 0.77287 1.90524 1.13881 1.86750 1.50029 1.21875 0.98893 0.93302 1.03270 1.19214 0.94350 0.89330 0.97746 1.22115 0.99178 1.04245 0.94954 1.22127 0.99181 1.04336 0.94967 1.20030 0.93584 0.94904 0.97410 1.21006 0.99998 0.91855 1.00409 1.21107 0.94409 0.97809 1.00508 1.21084 0.94433 0.97882 1.01741 1.21130 0.99670 0.92603 1.00316 1.21234 0.93910 0.98316 1.00873 0.93804 0.90836 0.92529 0.95188 0.93799 0.92678 0.89417 0.89586 0.93267 0.88743 0.93695 0.93616 0.88540 0.93326 0.86126 0.86415 0.86554 0.86340 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.59 2.86 -182.95 -0.52 -13.11 16 3 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 4 C -0.53 -14.86 9.39 -34.45 -0.32 -15.18 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.83 -0.10 1.65 16 7 N -0.90 -26.61 13.28 55.43 0.74 -25.88 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 C 0.51 10.09 7.09 -10.99 -0.08 10.01 16 13 O -0.53 -12.42 10.93 5.56 0.06 -12.36 16 14 C -0.13 -1.96 1.98 -27.89 -0.06 -2.02 16 15 C -0.01 -0.09 0.60 -155.66 -0.09 -0.18 16 16 C -0.15 -2.18 7.99 37.16 0.30 -1.89 16 17 C -0.15 -2.31 7.99 37.16 0.30 -2.02 16 18 C -0.06 -0.75 4.76 -104.62 -0.50 -1.25 16 19 C -0.11 -1.35 8.71 -39.58 -0.34 -1.69 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.13 -1.44 8.98 -39.58 -0.36 -1.80 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.72 6.44 -51.92 -0.33 0.38 16 27 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.09 1.18 6.77 -51.93 -0.35 0.83 16 31 H 0.09 1.10 7.48 -51.93 -0.39 0.71 16 32 H 0.05 0.65 7.39 -51.92 -0.38 0.27 16 33 H 0.09 1.68 5.51 -51.93 -0.29 1.39 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.82 5.51 -51.93 -0.29 1.54 16 37 H 0.05 0.67 7.39 -51.93 -0.38 0.28 16 38 H 0.12 1.32 7.10 -52.48 -0.37 0.95 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.29 5.90 -52.49 -0.31 0.98 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -31.75 334.18 -7.97 -39.72 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.40 Total: 0.81 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.86 Total: -11.06 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.21 Total: -38.98 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.06 Total: -12.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.75 -7.97 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072053448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.063 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds