Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99433 * 2 1 4 4 C 1.50696 * 109.47323 * 269.99541 * 3 2 1 5 5 H 1.07998 * 119.99724 * 0.02562 * 4 3 2 6 6 C 1.37869 * 120.00116 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00257 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 120.00056 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46937 * 59.99800 * 8 6 4 10 10 H 1.48496 * 109.47299 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46771 * 300.00022 * 8 6 4 12 12 C 1.34768 * 120.00361 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00145 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00322 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47344 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47056 * 60.00169 * 15 14 12 17 17 C 1.53002 * 109.46947 * 299.99894 * 15 14 12 18 18 C 1.50706 * 109.46962 * 180.02562 * 15 14 12 19 19 C 1.38237 * 119.99761 * 180.02562 * 18 15 14 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 359.97438 * 18 15 14 24 24 H 1.08995 * 109.47507 * 269.99941 * 1 2 3 25 25 H 1.08997 * 109.47303 * 30.00962 * 1 2 3 26 26 H 1.09008 * 109.46613 * 149.99796 * 1 2 3 27 27 H 1.09003 * 109.47155 * 29.99692 * 3 2 1 28 28 H 1.08997 * 109.46932 * 149.99245 * 3 2 1 29 29 H 0.97006 * 120.00632 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46940 * 59.99934 * 14 12 2 31 31 H 1.08999 * 109.47117 * 300.00120 * 14 12 2 32 32 H 1.09007 * 109.46732 * 179.97438 * 16 15 14 33 33 H 1.08992 * 109.46964 * 299.99962 * 16 15 14 34 34 H 1.08999 * 109.47201 * 60.00009 * 16 15 14 35 35 H 1.08993 * 109.47368 * 299.99744 * 17 15 14 36 36 H 1.09002 * 109.46902 * 60.00789 * 17 15 14 37 37 H 1.09004 * 109.47125 * 179.97438 * 17 15 14 38 38 H 1.08005 * 120.00088 * 359.96779 * 19 18 15 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0975 1.0962 -2.2416 6 6 3.1268 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6731 8 14 3.4376 3.4172 -3.4339 9 1 2.1398 3.5954 -4.1333 10 1 4.1811 4.7026 -3.4339 11 1 4.2394 2.3821 -4.1345 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3856 -2.4722 0.0005 15 6 2.3799 -3.6351 0.0018 16 6 3.2585 -3.5534 1.2517 17 6 3.2605 -3.5545 -1.2468 18 6 1.6265 -4.9403 0.0012 19 6 2.3178 -6.1374 0.0027 20 6 1.6266 -7.3345 0.0026 21 6 0.2443 -7.3346 0.0022 22 6 -0.4470 -6.1376 -0.0042 23 6 0.2441 -4.9404 0.0002 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5139 27 1 1.6082 2.0285 0.5138 28 1 3.1498 1.1386 0.5139 29 1 4.0316 4.4432 -0.8503 30 1 0.7593 -2.5302 -0.8897 31 1 0.7586 -2.5298 0.8903 32 1 3.9666 -4.3822 1.2528 33 1 3.8034 -2.6094 1.2517 34 1 2.6312 -3.6108 2.1412 35 1 2.6346 -3.6127 -2.1372 36 1 3.8055 -2.6105 -1.2467 37 1 3.9692 -4.3827 -1.2457 38 1 3.3978 -6.1373 0.0038 39 1 2.1667 -8.2698 0.0034 40 1 -0.2956 -8.2700 0.0026 41 1 -1.5270 -6.1376 -0.0090 42 1 -0.2960 -4.0051 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072053448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -34.165432 kcal Electronic energy + Delta-G solvation = -21521.609368 eV Core-core repulsion = 18465.654075 eV Total energy + Delta-G solvation = -3055.955293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41100 -39.96228 -37.17786 -36.10769 -34.71828 -31.96104 -30.91152 -30.21950 -28.65319 -28.11725 -27.14755 -24.93896 -23.75668 -23.04811 -20.64291 -19.48525 -18.67900 -18.35144 -17.14344 -16.98336 -16.45715 -16.15837 -15.78628 -15.61841 -15.06291 -14.92833 -14.47350 -14.43212 -14.16812 -13.90083 -13.54461 -13.40560 -13.37763 -13.14200 -12.94992 -12.70995 -12.66803 -12.55867 -12.32736 -12.21118 -12.13618 -11.85848 -11.67069 -11.56719 -11.36367 -10.63589 -10.21695 -9.72284 -9.51752 -9.31948 -8.21211 -6.36273 0.55027 0.59408 1.36261 1.40434 1.47699 1.92008 2.34000 2.50127 2.97465 3.07893 3.60796 3.73419 4.05814 4.07501 4.23751 4.24555 4.33538 4.38541 4.46375 4.62334 4.69224 4.72131 4.76531 4.78522 4.84335 4.97589 5.02318 5.05504 5.09406 5.13561 5.22420 5.25370 5.27190 5.47799 5.50134 5.60756 5.71433 5.72912 5.82696 5.90492 6.08475 6.21597 6.71869 6.86515 7.30605 7.58921 8.85237 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030062 B = 0.004017 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.172602 B = 6967.847693 C = 7124.516879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.495 3.505 13 O -0.576 6.576 14 C -0.119 4.119 15 C -0.001 4.001 16 C -0.143 4.143 17 C -0.145 4.145 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.135 4.135 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.019 0.981 28 H -0.002 1.002 29 H 0.267 0.733 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.355 -20.536 1.692 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C 0.139 3.861 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.284 3.716 13 O -0.457 6.457 14 C -0.158 4.158 15 C -0.002 4.002 16 C -0.200 4.200 17 C -0.202 4.202 18 C -0.074 4.074 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.037 0.963 28 H 0.016 0.984 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.665 -20.342 1.746 22.589 hybrid contribution 0.644 0.910 -0.698 1.316 sum -9.021 -19.432 1.047 21.450 Atomic orbital electron populations 1.21918 0.78229 1.03875 1.02458 1.48214 1.08239 1.06482 1.71623 1.18699 0.91062 0.80507 0.95813 1.21683 1.36685 1.06486 0.93131 0.92920 1.25846 0.94968 0.96470 1.01851 1.70043 1.38974 1.14833 1.33070 0.85501 0.78832 0.77353 0.79330 1.18477 1.20373 1.20350 1.21246 0.88040 0.86294 0.75972 1.90530 1.16139 1.87524 1.51473 1.21870 0.98714 0.89802 1.05423 1.19104 0.94111 0.90505 0.96441 1.22013 0.99469 1.02603 0.95946 1.22025 0.99499 1.02558 0.96105 1.19828 0.94157 0.93811 0.99576 1.21124 1.00236 0.92307 1.00980 1.21387 0.95010 0.98054 0.99857 1.21462 0.94390 0.98995 1.00323 1.21454 1.01003 0.92173 0.99362 1.21422 0.93370 0.99565 1.00868 0.91252 0.91789 0.88853 0.96265 0.98351 0.92441 0.87352 0.86830 0.92224 0.92384 0.92741 0.93231 0.92497 0.92173 0.86218 0.84460 0.84087 0.83953 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.24 127.77 1.31 3.59 16 2 N -0.61 -25.92 2.86 -851.14 -2.43 -28.35 16 3 C 0.26 14.17 5.16 85.63 0.44 14.62 16 4 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.44 5.46 84.65 0.46 0.90 16 7 N -0.93 -56.79 13.28 21.44 0.28 -56.51 16 8 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 C 0.49 20.05 7.09 87.66 0.62 20.67 16 13 O -0.58 -28.37 10.93 -3.04 -0.03 -28.41 16 14 C -0.12 -3.29 1.98 29.85 0.06 -3.23 16 15 C 0.00 -0.03 0.60 -52.93 -0.03 -0.06 16 16 C -0.14 -4.26 7.99 71.98 0.58 -3.69 16 17 C -0.14 -4.54 7.99 71.98 0.57 -3.96 16 18 C -0.07 -1.70 4.76 -19.86 -0.09 -1.80 16 19 C -0.13 -2.76 8.71 22.27 0.19 -2.56 16 20 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 21 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 22 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 23 C -0.13 -2.64 8.98 22.27 0.20 -2.44 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 26 H 0.09 2.05 6.44 -2.38 -0.02 2.04 16 27 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 28 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 29 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 30 H 0.11 2.59 6.77 -2.38 -0.02 2.58 16 31 H 0.11 2.56 7.48 -2.39 -0.02 2.54 16 32 H 0.06 1.59 7.39 -2.38 -0.02 1.57 16 33 H 0.06 2.18 5.51 -2.39 -0.01 2.16 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 2.26 5.51 -2.39 -0.01 2.25 16 37 H 0.06 1.67 7.39 -2.38 -0.02 1.65 16 38 H 0.12 2.48 7.10 -2.91 -0.02 2.46 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.14 2.25 5.90 -2.91 -0.02 2.23 16 Total: -1.00 -72.46 334.18 6.06 -66.40 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.99 Total: 14.42 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.22 Total: -14.84 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.15 Total: -84.86 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.03 Total: -28.41 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.46 6.06 -66.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072053448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.233 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds