Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46750 * 2 1 4 4 C 1.52994 * 109.47435 * 60.00080 * 3 2 1 5 5 C 1.53006 * 109.47094 * 299.99624 * 3 2 1 6 6 C 1.53001 * 109.46750 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.46814 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00261 * 0.02562 * 7 6 3 9 9 N 1.34782 * 120.00178 * 179.97438 * 7 6 3 10 10 C 1.39229 * 120.00178 * 185.18420 * 9 7 6 11 11 C 1.39488 * 119.83680 * 324.06094 * 10 9 7 12 12 C 1.36370 * 120.16910 * 180.29714 * 11 10 9 13 13 C 1.40876 * 119.82773 * 359.48382 * 12 11 10 14 14 C 1.41151 * 120.15968 * 180.25194 * 13 12 11 15 15 H 1.08001 * 119.99796 * 205.02484 * 14 13 12 16 16 C 1.39905 * 120.00631 * 25.02415 * 14 13 12 17 17 N 1.30878 * 119.99418 * 17.77972 * 16 14 13 18 18 Si 1.86793 * 120.00304 * 197.77670 * 16 14 13 19 19 H 1.48501 * 109.47095 * 94.98222 * 18 16 14 20 20 H 1.48500 * 109.47277 * 214.98269 * 18 16 14 21 21 H 1.48504 * 109.47130 * 334.98290 * 18 16 14 22 22 C 1.40867 * 119.66994 * 0.51382 * 13 12 11 23 23 C 1.36370 * 119.83121 * 359.73713 * 22 13 12 24 24 H 1.09001 * 109.47229 * 60.00577 * 1 2 3 25 25 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47420 * 299.99853 * 1 2 3 27 27 H 1.08996 * 109.47020 * 239.99803 * 2 1 3 28 28 H 1.09001 * 109.47229 * 119.99423 * 2 1 3 29 29 H 1.08993 * 109.47342 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47085 * 300.00187 * 4 3 2 31 31 H 1.09002 * 109.47322 * 59.99484 * 4 3 2 32 32 H 1.08996 * 109.47333 * 300.00599 * 5 3 2 33 33 H 1.09002 * 109.46629 * 60.00301 * 5 3 2 34 34 H 1.08993 * 109.47213 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47207 * 60.00534 * 6 3 2 36 36 H 1.08991 * 109.47304 * 299.99565 * 6 3 2 37 37 H 0.97006 * 119.99189 * 5.19023 * 9 7 6 38 38 H 1.07998 * 119.91024 * 0.02562 * 11 10 9 39 39 H 1.07998 * 120.08656 * 179.70468 * 12 11 10 40 40 H 0.97000 * 119.99698 * 179.97438 * 17 16 14 41 41 H 1.08005 * 120.07972 * 179.71086 * 22 13 12 42 42 H 1.08001 * 119.91604 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5299 2.1638 -1.2493 6 6 3.5699 1.4426 0.0006 7 6 4.0722 2.8634 0.0000 8 8 3.2840 3.7853 -0.0004 9 7 5.3973 3.1098 0.0009 10 6 5.8621 4.4177 0.1093 11 6 5.1594 5.4568 -0.5008 12 6 5.6118 6.7396 -0.4041 13 6 6.7863 7.0154 0.3234 14 6 7.2580 8.3413 0.4325 15 1 8.3061 8.5283 0.6140 16 6 6.3680 9.4132 0.3056 17 7 5.0809 9.2138 0.4345 18 14 7.0165 11.1289 -0.0478 19 1 6.9754 11.3821 -1.5105 20 1 6.1728 12.1309 0.6518 21 1 8.4169 11.2378 0.4342 22 6 7.4905 5.9607 0.9367 23 6 7.0285 4.6824 0.8270 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.8928 3.1916 1.2489 30 1 0.4399 2.1637 1.2492 31 1 1.8932 1.6500 2.1392 32 1 1.8932 1.6499 -2.1393 33 1 0.4399 2.1637 -1.2493 34 1 1.8935 3.1913 -1.2496 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9290 0.8908 37 1 6.0271 2.3758 -0.0740 38 1 4.2570 5.2442 -1.0548 39 1 5.0693 7.5425 -0.8809 40 1 4.4638 9.9570 0.3469 41 1 8.3942 6.1641 1.4921 42 1 7.5671 3.8728 1.2970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072936118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -34.509892 kcal Electronic energy + Delta-G solvation = -21170.614361 eV Core-core repulsion = 18114.644131 eV Total energy + Delta-G solvation = -3055.970230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04154 -37.91635 -36.60083 -34.37848 -32.93663 -30.91203 -29.47803 -29.17169 -27.62250 -27.05310 -24.92872 -23.74288 -21.41905 -20.96961 -19.46859 -18.52398 -17.29941 -16.73322 -16.23658 -15.25941 -15.01925 -14.72613 -14.70238 -14.13627 -13.92026 -13.42483 -12.98506 -12.83790 -12.62434 -12.21895 -12.06475 -11.93943 -11.74403 -11.66334 -11.55013 -11.17038 -11.07728 -11.01100 -10.84554 -10.69369 -10.47946 -10.44032 -10.42309 -9.87016 -9.74106 -9.34739 -8.87663 -8.54987 -7.49636 -6.98979 -6.72284 -4.27299 2.63223 3.02638 3.08731 3.12521 3.13619 3.40285 3.83069 3.94930 4.65319 4.74785 4.86734 4.87443 5.23717 5.28278 5.44680 5.56940 5.62213 5.70202 5.70981 5.75283 5.90126 5.99491 6.01615 6.05684 6.17052 6.22105 6.26922 6.37454 6.43803 6.69789 6.72093 6.94674 7.03276 7.09169 7.18912 7.33153 7.62819 7.72247 8.02293 8.08038 8.25420 8.36482 8.65632 8.86456 8.90644 9.05297 10.20705 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.003689 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.539947 B = 7588.190527 C = 8139.148612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.044 4.044 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.131 4.131 7 C 0.498 3.502 8 O -0.519 6.519 9 N -0.655 5.655 10 C -0.008 4.008 11 C -0.085 4.085 12 C -0.158 4.158 13 C 0.106 3.894 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.788 5.788 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.217 4.217 23 C -0.105 4.105 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.393 0.607 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.281 0.719 41 H 0.094 0.906 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -14.147 -1.609 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.045 4.045 4 C -0.213 4.213 5 C -0.212 4.212 6 C -0.172 4.172 7 C 0.285 3.715 8 O -0.396 6.396 9 N -0.298 5.298 10 C -0.100 4.100 11 C -0.105 4.105 12 C -0.178 4.178 13 C 0.103 3.897 14 C -0.490 4.490 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.413 5.413 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.237 4.237 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.226 0.774 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.387 -13.374 -1.578 14.504 hybrid contribution 0.593 0.289 -0.036 0.661 sum -4.794 -13.085 -1.614 14.028 Atomic orbital electron populations 1.21872 0.95942 1.01021 1.02339 1.21589 0.96111 0.95954 1.01439 1.20242 0.92301 0.94733 0.97196 1.22162 1.00505 1.03215 0.95382 1.22156 1.00553 1.03100 0.95392 1.21756 0.97146 0.94699 1.03560 1.20578 0.82429 0.91270 0.77200 1.90573 1.54410 1.46183 1.48481 1.43049 1.06598 1.07938 1.72208 1.17201 0.99862 0.82970 1.09979 1.20542 0.98519 0.92587 0.98822 1.20995 0.99483 0.94782 1.02549 1.17668 0.91101 0.92627 0.88263 1.19556 0.95761 0.90383 1.43283 0.90416 1.25937 0.94465 1.01585 0.92389 1.69870 1.03130 1.34107 1.34176 0.86304 0.79991 0.81044 0.79401 1.19347 1.20301 1.18596 1.20541 1.03339 0.92527 1.07303 1.20064 0.96630 0.96359 0.99444 0.92371 0.93301 0.92354 0.92284 0.92269 0.89330 0.93052 0.93864 0.93878 0.93020 0.89431 0.89592 0.89480 0.77438 0.87557 0.86380 0.90820 0.88747 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.21 37.16 0.34 -1.07 16 2 C -0.11 -1.10 4.99 -26.73 -0.13 -1.23 16 3 C -0.04 -0.54 0.54 -154.51 -0.08 -0.62 16 4 C -0.16 -2.12 7.82 37.15 0.29 -1.83 16 5 C -0.16 -2.05 7.82 37.16 0.29 -1.76 16 6 C -0.13 -1.59 4.77 -27.88 -0.13 -1.72 16 7 C 0.50 8.45 7.08 -10.98 -0.08 8.37 16 8 O -0.52 -10.72 8.78 5.55 0.05 -10.68 16 9 N -0.66 -11.40 5.30 -9.74 -0.05 -11.45 16 10 C -0.01 -0.18 6.30 -83.57 -0.53 -0.70 16 11 C -0.08 -2.11 8.61 -39.79 -0.34 -2.45 16 12 C -0.16 -4.25 8.63 -39.26 -0.34 -4.59 16 13 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 14 C -0.46 -12.30 9.03 -37.85 -0.34 -12.64 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 16 C 0.07 1.90 5.13 -17.33 -0.09 1.81 16 17 N -0.79 -20.90 10.98 55.55 0.61 -20.29 16 18 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 22 C -0.22 -5.31 9.74 -39.26 -0.38 -5.69 16 23 C -0.10 -2.31 9.90 -39.79 -0.39 -2.71 16 24 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.52 5.51 -51.93 -0.29 1.24 16 30 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 34 H 0.09 1.45 5.51 -51.93 -0.29 1.16 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.39 5.31 8.82 -40.82 -0.36 4.95 16 38 H 0.11 2.64 6.24 -52.49 -0.33 2.31 16 39 H 0.12 3.30 6.19 -52.49 -0.32 2.97 16 40 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 41 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -29.30 328.44 -8.26 -37.56 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.27 Total: 10.67 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -2.51 Total: -24.58 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.56 Total: -31.74 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.05 Total: -10.68 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.30 -8.26 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072936118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.051 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds