Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46750 * 2 1 4 4 C 1.52994 * 109.47435 * 60.00080 * 3 2 1 5 5 C 1.53006 * 109.47094 * 299.99624 * 3 2 1 6 6 C 1.53001 * 109.46750 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.46814 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00261 * 0.02562 * 7 6 3 9 9 N 1.34782 * 120.00178 * 179.97438 * 7 6 3 10 10 C 1.39229 * 120.00178 * 185.18420 * 9 7 6 11 11 C 1.39488 * 119.83680 * 324.06094 * 10 9 7 12 12 C 1.36370 * 120.16910 * 180.29714 * 11 10 9 13 13 C 1.40876 * 119.82773 * 359.48382 * 12 11 10 14 14 C 1.41151 * 120.15968 * 180.25194 * 13 12 11 15 15 H 1.08001 * 119.99796 * 205.02484 * 14 13 12 16 16 C 1.39905 * 120.00631 * 25.02415 * 14 13 12 17 17 N 1.30878 * 119.99418 * 17.77972 * 16 14 13 18 18 Si 1.86793 * 120.00304 * 197.77670 * 16 14 13 19 19 H 1.48501 * 109.47095 * 94.98222 * 18 16 14 20 20 H 1.48500 * 109.47277 * 214.98269 * 18 16 14 21 21 H 1.48504 * 109.47130 * 334.98290 * 18 16 14 22 22 C 1.40867 * 119.66994 * 0.51382 * 13 12 11 23 23 C 1.36370 * 119.83121 * 359.73713 * 22 13 12 24 24 H 1.09001 * 109.47229 * 60.00577 * 1 2 3 25 25 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47420 * 299.99853 * 1 2 3 27 27 H 1.08996 * 109.47020 * 239.99803 * 2 1 3 28 28 H 1.09001 * 109.47229 * 119.99423 * 2 1 3 29 29 H 1.08993 * 109.47342 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47085 * 300.00187 * 4 3 2 31 31 H 1.09002 * 109.47322 * 59.99484 * 4 3 2 32 32 H 1.08996 * 109.47333 * 300.00599 * 5 3 2 33 33 H 1.09002 * 109.46629 * 60.00301 * 5 3 2 34 34 H 1.08993 * 109.47213 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47207 * 60.00534 * 6 3 2 36 36 H 1.08991 * 109.47304 * 299.99565 * 6 3 2 37 37 H 0.97006 * 119.99189 * 5.19023 * 9 7 6 38 38 H 1.07998 * 119.91024 * 0.02562 * 11 10 9 39 39 H 1.07998 * 120.08656 * 179.70468 * 12 11 10 40 40 H 0.97000 * 119.99698 * 179.97438 * 17 16 14 41 41 H 1.08005 * 120.07972 * 179.71086 * 22 13 12 42 42 H 1.08001 * 119.91604 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5299 2.1638 -1.2493 6 6 3.5699 1.4426 0.0006 7 6 4.0722 2.8634 0.0000 8 8 3.2840 3.7853 -0.0004 9 7 5.3973 3.1098 0.0009 10 6 5.8621 4.4177 0.1093 11 6 5.1594 5.4568 -0.5008 12 6 5.6118 6.7396 -0.4041 13 6 6.7863 7.0154 0.3234 14 6 7.2580 8.3413 0.4325 15 1 8.3061 8.5283 0.6140 16 6 6.3680 9.4132 0.3056 17 7 5.0809 9.2138 0.4345 18 14 7.0165 11.1289 -0.0478 19 1 6.9754 11.3821 -1.5105 20 1 6.1728 12.1309 0.6518 21 1 8.4169 11.2378 0.4342 22 6 7.4905 5.9607 0.9367 23 6 7.0285 4.6824 0.8270 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.8928 3.1916 1.2489 30 1 0.4399 2.1637 1.2492 31 1 1.8932 1.6500 2.1392 32 1 1.8932 1.6499 -2.1393 33 1 0.4399 2.1637 -1.2493 34 1 1.8935 3.1913 -1.2496 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9290 0.8908 37 1 6.0271 2.3758 -0.0740 38 1 4.2570 5.2442 -1.0548 39 1 5.0693 7.5425 -0.8809 40 1 4.4638 9.9570 0.3469 41 1 8.3942 6.1641 1.4921 42 1 7.5671 3.8728 1.2970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072936118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -50.540311 kcal Electronic energy + Delta-G solvation = -21171.309492 eV Core-core repulsion = 18114.644131 eV Total energy + Delta-G solvation = -3056.665361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42203 -39.47564 -37.95241 -36.07776 -34.69624 -31.94108 -31.34144 -30.83255 -28.87015 -28.12554 -26.62574 -24.75388 -23.21780 -22.71317 -21.00867 -19.55050 -19.22859 -18.19373 -17.69895 -17.02025 -16.34245 -15.82239 -15.74141 -15.60167 -15.34854 -14.97513 -14.51476 -14.21562 -13.96700 -13.85093 -13.66939 -13.37468 -13.04111 -12.83891 -12.76117 -12.64874 -12.61930 -12.32993 -12.26327 -11.89636 -11.76261 -11.66481 -11.51997 -11.35631 -11.28515 -11.16643 -10.52067 -10.14387 -9.43222 -8.84846 -8.60987 -6.26271 0.85467 1.15273 1.37191 1.46217 1.52010 1.91004 2.20406 2.47776 2.77278 3.73243 3.78126 3.89003 3.97146 4.27965 4.44793 4.45954 4.50773 4.53226 4.69202 4.70905 4.80993 4.89977 4.94836 4.99715 5.11512 5.13202 5.15067 5.20091 5.23642 5.28830 5.29422 5.33536 5.44192 5.52996 5.63686 5.70053 5.75595 5.90824 6.10811 6.16444 6.36772 6.69705 6.84849 6.93439 7.03247 7.57793 8.33700 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.003689 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.539947 B = 7588.190527 C = 8139.148612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C -0.044 4.044 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.121 4.121 7 C 0.491 3.509 8 O -0.559 6.559 9 N -0.650 5.650 10 C 0.009 3.991 11 C -0.099 4.099 12 C -0.183 4.183 13 C 0.072 3.928 14 C -0.496 4.496 15 H 0.080 0.920 16 C 0.030 3.970 17 N -0.829 5.829 18 Si 0.985 3.015 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.226 4.226 23 C -0.101 4.101 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.416 0.584 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.286 0.714 41 H 0.108 0.892 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 -16.967 -1.353 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.045 4.045 4 C -0.210 4.210 5 C -0.210 4.210 6 C -0.160 4.160 7 C 0.281 3.719 8 O -0.438 6.438 9 N -0.295 5.295 10 C -0.084 4.084 11 C -0.120 4.120 12 C -0.203 4.203 13 C 0.070 3.930 14 C -0.526 4.526 15 H 0.099 0.901 16 C -0.184 4.184 17 N -0.455 5.455 18 Si 0.806 3.194 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.246 4.246 23 C -0.121 4.121 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.253 0.747 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.627 -16.250 -1.323 16.948 hybrid contribution 0.265 0.991 -0.106 1.032 sum -4.362 -15.259 -1.429 15.935 Atomic orbital electron populations 1.21883 0.95840 1.01885 1.01759 1.21535 0.96169 0.93721 1.02896 1.20277 0.92481 0.96239 0.95466 1.22098 1.00917 1.01067 0.96966 1.22095 1.00928 1.01100 0.96882 1.21817 0.96815 0.91042 1.06350 1.21605 0.81662 0.93160 0.75472 1.90606 1.55393 1.48164 1.49639 1.43017 1.07607 1.06580 1.72333 1.17284 0.98981 0.84608 1.07540 1.20588 0.98725 0.92977 0.99661 1.20889 1.00327 0.95090 1.03970 1.18002 0.91763 0.93916 0.89333 1.19823 0.96190 0.91215 1.45347 0.90142 1.26856 0.94394 1.05764 0.91412 1.69953 1.04533 1.35625 1.35405 0.85152 0.79567 0.75471 0.79259 1.18844 1.19467 1.17684 1.20823 1.03640 0.93093 1.07015 1.20428 0.96397 0.96703 0.98590 0.92931 0.91711 0.93045 0.90711 0.90859 0.93475 0.92529 0.92686 0.92470 0.92542 0.93344 0.86466 0.86652 0.74669 0.88466 0.88848 0.90349 0.87387 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.21 71.98 0.66 -1.76 16 2 C -0.11 -1.63 4.99 30.60 0.15 -1.47 16 3 C -0.04 -0.97 0.54 -52.18 -0.03 -0.99 16 4 C -0.15 -4.04 7.82 71.98 0.56 -3.48 16 5 C -0.15 -3.91 7.82 71.98 0.56 -3.35 16 6 C -0.12 -2.49 4.77 29.85 0.14 -2.34 16 7 C 0.49 15.98 7.08 87.66 0.62 16.60 16 8 O -0.56 -23.65 8.78 -3.04 -0.03 -23.67 16 9 N -0.65 -21.17 5.30 -303.10 -1.61 -22.78 16 10 C 0.01 0.41 6.30 38.57 0.24 0.66 16 11 C -0.10 -5.13 8.61 22.14 0.19 -4.94 16 12 C -0.18 -10.39 8.63 22.48 0.19 -10.19 16 13 C 0.07 4.05 5.57 -21.27 -0.12 3.93 16 14 C -0.50 -27.51 9.03 23.39 0.21 -27.29 16 15 H 0.08 4.23 7.91 -2.91 -0.02 4.20 16 16 C 0.03 1.58 5.13 85.24 0.44 2.02 16 17 N -0.83 -46.25 10.98 21.82 0.24 -46.01 16 18 Si 0.99 39.59 29.59 68.60 2.03 41.62 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 C -0.23 -11.03 9.74 22.48 0.22 -10.82 16 23 C -0.10 -4.30 9.90 22.13 0.22 -4.08 16 24 H 0.05 0.86 6.43 -2.39 -0.02 0.85 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.86 6.43 -2.39 -0.02 0.84 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.66 5.51 -2.39 -0.01 1.64 16 30 H 0.06 1.38 6.43 -2.39 -0.02 1.37 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.34 6.43 -2.39 -0.02 1.33 16 34 H 0.05 1.64 5.51 -2.39 -0.01 1.63 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.42 9.65 8.82 -92.70 -0.82 8.84 16 38 H 0.10 5.11 6.24 -2.91 -0.02 5.09 16 39 H 0.09 5.65 6.19 -2.91 -0.02 5.63 16 40 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 41 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 42 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -68.59 328.44 5.11 -63.48 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.20 Total: 34.87 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 4.27 Total: -47.51 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -1.37 Total: -68.79 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.03 Total: -23.67 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -68.59 5.11 -63.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072936118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.939 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds