Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47114 * 2 1 4 4 C 1.52994 * 109.47090 * 60.00506 * 3 2 1 5 5 C 1.52999 * 109.47002 * 299.99895 * 3 2 1 6 6 C 1.53008 * 109.47156 * 180.02562 * 3 2 1 7 7 C 1.50698 * 109.47067 * 180.02562 * 6 3 2 8 8 O 1.21281 * 119.99856 * 357.68797 * 7 6 3 9 9 N 1.34780 * 119.99636 * 177.68386 * 7 6 3 10 10 C 1.37134 * 120.00320 * 5.76106 * 9 7 6 11 11 H 1.08004 * 120.00311 * 55.48228 * 10 9 7 12 12 C 1.38894 * 119.99790 * 235.48658 * 10 9 7 13 13 N 1.31416 * 119.99980 * 9.48037 * 12 10 9 14 14 Si 1.86796 * 119.99815 * 189.47861 * 12 10 9 15 15 H 1.48501 * 109.47197 * 59.99982 * 14 12 10 16 16 H 1.48504 * 109.46995 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47448 * 300.00003 * 14 12 10 18 18 C 1.39791 * 119.99327 * 185.75516 * 9 7 6 19 19 C 1.38965 * 120.07311 * 175.30672 * 18 9 7 20 20 C 1.38079 * 119.92022 * 179.97438 * 19 18 9 21 21 C 1.38305 * 120.08155 * 359.97438 * 20 19 18 22 22 C 1.38308 * 120.15155 * 0.02562 * 21 20 19 23 23 C 1.38085 * 120.08082 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46765 * 299.99429 * 1 2 3 26 26 H 1.08995 * 109.47059 * 60.00135 * 1 2 3 27 27 H 1.09002 * 109.47232 * 240.00110 * 2 1 3 28 28 H 1.09003 * 109.47503 * 120.00283 * 2 1 3 29 29 H 1.09001 * 109.47104 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.47005 * 299.99588 * 4 3 2 31 31 H 1.08995 * 109.47693 * 59.99761 * 4 3 2 32 32 H 1.08995 * 109.47913 * 300.00063 * 5 3 2 33 33 H 1.09003 * 109.47078 * 60.00422 * 5 3 2 34 34 H 1.09001 * 109.46853 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46990 * 59.99903 * 6 3 2 36 36 H 1.09000 * 109.46705 * 300.00185 * 6 3 2 37 37 H 0.97000 * 120.00194 * 184.98104 * 13 12 10 38 38 H 1.07999 * 120.03622 * 359.69324 * 19 18 9 39 39 H 1.08005 * 119.96035 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.92723 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.95923 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.03870 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2850 3.7848 -0.0415 9 7 5.3966 3.1098 0.0468 10 6 6.2902 2.0721 -0.0255 11 1 6.2551 1.3861 -0.8589 12 6 7.2405 1.9033 0.9733 13 7 7.1697 2.6162 2.0750 14 14 8.6193 0.6628 0.7505 15 1 9.4187 1.0213 -0.4485 16 1 9.4938 0.6739 1.9507 17 1 8.0411 -0.6934 0.5725 18 6 5.8590 4.4234 0.1688 19 6 7.2183 4.6723 0.3152 20 6 7.6716 5.9711 0.4349 21 6 6.7748 7.0236 0.4087 22 6 5.4212 6.7794 0.2631 23 6 4.9606 5.4831 0.1439 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8938 3.1912 1.2495 30 1 0.4400 2.1637 1.2493 31 1 1.8934 1.6499 2.1392 32 1 1.8932 1.6500 -2.1393 33 1 0.4399 2.1637 -1.2492 34 1 1.8937 3.1912 -1.2495 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 7.8721 2.5513 2.7407 38 1 7.9188 3.8507 0.3399 39 1 8.7279 6.1653 0.5492 40 1 7.1320 8.0384 0.5030 41 1 4.7236 7.6037 0.2427 42 1 3.9035 5.2932 0.0307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075083581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = -3.828263 kcal Electronic energy + Delta-G solvation = -22305.751782 eV Core-core repulsion = 19251.112007 eV Total energy + Delta-G solvation = -3054.639775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95362 -37.99089 -36.36211 -34.95815 -31.96167 -30.63091 -29.58260 -28.98945 -26.93351 -26.72216 -25.12991 -23.63711 -21.67253 -21.07127 -19.39196 -18.28854 -17.39980 -16.24052 -15.54541 -15.16200 -14.63107 -14.51569 -14.35939 -14.25338 -13.74070 -13.02506 -13.00539 -12.97479 -12.44610 -12.24653 -12.06416 -11.87890 -11.59304 -11.45950 -11.33123 -11.15715 -11.03699 -10.82289 -10.71854 -10.63412 -10.50218 -10.17393 -10.02343 -9.98840 -9.94439 -9.15555 -8.71307 -7.92135 -7.76570 -6.86032 -6.29370 -4.53128 2.45082 2.58979 3.03990 3.11799 3.12522 3.77948 3.97182 4.52017 4.75538 5.15011 5.23713 5.25529 5.27830 5.62733 5.74189 5.81133 5.88646 5.96372 6.06222 6.15718 6.18083 6.18706 6.25240 6.28235 6.30143 6.37716 6.48118 6.57147 6.66199 6.72369 6.74156 6.77370 6.92963 7.03770 7.10268 7.23727 7.26475 7.53748 7.66045 7.72180 7.83479 8.08083 8.46500 8.86723 9.29519 9.67070 10.48188 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.007401 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.332890 B = 3782.160589 C = 5269.135301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.047 4.047 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.107 4.107 7 C 0.498 3.502 8 O -0.558 6.558 9 N -0.385 5.385 10 C -0.367 4.367 11 H 0.091 0.909 12 C 0.056 3.944 13 N -0.841 5.841 14 Si 0.912 3.088 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.185 3.815 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.194 4.194 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.275 0.725 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -2.369 -2.758 6.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.048 4.048 4 C -0.207 4.207 5 C -0.209 4.209 6 C -0.147 4.147 7 C 0.291 3.709 8 O -0.444 6.444 9 N -0.092 5.092 10 C -0.494 4.494 11 H 0.109 0.891 12 C -0.153 4.153 13 N -0.473 5.473 14 Si 0.737 3.263 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.193 1.193 18 C 0.088 3.912 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.195 4.195 22 C -0.140 4.140 23 C -0.213 4.213 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.444 -2.050 -2.544 6.349 hybrid contribution 1.163 -0.689 0.221 1.370 sum -4.281 -2.739 -2.323 5.588 Atomic orbital electron populations 1.21862 0.96370 1.00685 1.02026 1.21579 0.95535 0.96493 1.01518 1.20294 0.93733 0.94189 0.96572 1.22085 0.99634 1.03022 0.95912 1.22157 0.99729 1.03345 0.95706 1.21428 0.94290 0.94969 1.04003 1.20908 0.82011 0.91058 0.76892 1.90036 1.55663 1.45356 1.53326 1.41045 1.04547 1.03843 1.59771 1.19251 1.14332 1.08035 1.07811 0.89100 1.25598 0.99320 0.96853 0.93572 1.70021 1.32314 1.38701 1.06297 0.86241 0.80756 0.81046 0.78270 1.19356 1.20573 1.19258 1.18315 0.92686 0.84701 0.95544 1.21033 0.95143 0.96164 1.00502 1.20763 0.98206 0.92908 1.02454 1.20771 0.93953 0.97585 1.07153 1.20868 0.94833 0.96435 1.01863 1.22826 1.03655 0.91079 1.03759 0.93574 0.92548 0.92577 0.92376 0.92274 0.89771 0.93642 0.93926 0.94168 0.93682 0.89307 0.90033 0.89175 0.91496 0.85198 0.87903 0.88304 0.87840 0.80707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.21 37.16 0.34 -1.47 16 2 C -0.11 -1.55 4.99 -26.73 -0.13 -1.68 16 3 C -0.05 -0.77 0.54 -154.51 -0.08 -0.85 16 4 C -0.15 -2.51 7.82 37.15 0.29 -2.22 16 5 C -0.15 -2.44 7.82 37.16 0.29 -2.15 16 6 C -0.11 -2.03 3.58 -27.88 -0.10 -2.13 16 7 C 0.50 11.24 6.98 -10.99 -0.08 11.16 16 8 O -0.56 -12.70 7.74 5.56 0.04 -12.66 16 9 N -0.39 -9.49 2.62 -58.98 -0.15 -9.65 16 10 C -0.37 -8.91 7.64 -14.94 -0.11 -9.02 16 11 H 0.09 2.10 7.76 -52.48 -0.41 1.69 16 12 C 0.06 1.35 3.48 -17.49 -0.06 1.29 16 13 N -0.84 -21.69 11.40 55.49 0.63 -21.06 16 14 Si 0.91 18.51 29.57 -169.99 -5.03 13.48 16 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 C 0.18 4.62 6.05 -83.70 -0.51 4.11 16 19 C -0.11 -2.60 7.87 -39.37 -0.31 -2.91 16 20 C -0.12 -2.65 10.04 -39.62 -0.40 -3.05 16 21 C -0.18 -3.52 10.04 -39.53 -0.40 -3.92 16 22 C -0.12 -2.53 10.04 -39.61 -0.40 -2.93 16 23 C -0.19 -4.56 9.06 -39.37 -0.36 -4.91 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 26 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.64 5.59 -51.93 -0.29 1.35 16 30 H 0.04 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.09 1.65 5.43 -51.93 -0.28 1.36 16 35 H 0.08 1.47 8.01 -51.93 -0.42 1.05 16 36 H 0.09 1.78 8.11 -51.93 -0.42 1.36 16 37 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.13 3.24 5.15 -52.49 -0.27 2.97 16 39 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.18 4.18 4.50 -56.37 -0.25 3.93 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -26.25 321.29 -7.87 -34.12 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.19 Total: 11.59 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.01 Total: -20.68 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.48 Total: -30.70 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.04 Total: -12.66 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.25 -7.87 -34.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075083581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.293 kcal (2) G-P(sol) polarization free energy of solvation -26.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds