Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47114 * 2 1 4 4 C 1.52994 * 109.47090 * 60.00506 * 3 2 1 5 5 C 1.52999 * 109.47002 * 299.99895 * 3 2 1 6 6 C 1.53008 * 109.47156 * 180.02562 * 3 2 1 7 7 C 1.50698 * 109.47067 * 180.02562 * 6 3 2 8 8 O 1.21281 * 119.99856 * 357.68797 * 7 6 3 9 9 N 1.34780 * 119.99636 * 177.68386 * 7 6 3 10 10 C 1.37134 * 120.00320 * 5.76106 * 9 7 6 11 11 H 1.08004 * 120.00311 * 55.48228 * 10 9 7 12 12 C 1.38894 * 119.99790 * 235.48658 * 10 9 7 13 13 N 1.31416 * 119.99980 * 9.48037 * 12 10 9 14 14 Si 1.86796 * 119.99815 * 189.47861 * 12 10 9 15 15 H 1.48501 * 109.47197 * 59.99982 * 14 12 10 16 16 H 1.48504 * 109.46995 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47448 * 300.00003 * 14 12 10 18 18 C 1.39791 * 119.99327 * 185.75516 * 9 7 6 19 19 C 1.38965 * 120.07311 * 175.30672 * 18 9 7 20 20 C 1.38079 * 119.92022 * 179.97438 * 19 18 9 21 21 C 1.38305 * 120.08155 * 359.97438 * 20 19 18 22 22 C 1.38308 * 120.15155 * 0.02562 * 21 20 19 23 23 C 1.38085 * 120.08082 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46765 * 299.99429 * 1 2 3 26 26 H 1.08995 * 109.47059 * 60.00135 * 1 2 3 27 27 H 1.09002 * 109.47232 * 240.00110 * 2 1 3 28 28 H 1.09003 * 109.47503 * 120.00283 * 2 1 3 29 29 H 1.09001 * 109.47104 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.47005 * 299.99588 * 4 3 2 31 31 H 1.08995 * 109.47693 * 59.99761 * 4 3 2 32 32 H 1.08995 * 109.47913 * 300.00063 * 5 3 2 33 33 H 1.09003 * 109.47078 * 60.00422 * 5 3 2 34 34 H 1.09001 * 109.46853 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46990 * 59.99903 * 6 3 2 36 36 H 1.09000 * 109.46705 * 300.00185 * 6 3 2 37 37 H 0.97000 * 120.00194 * 184.98104 * 13 12 10 38 38 H 1.07999 * 120.03622 * 359.69324 * 19 18 9 39 39 H 1.08005 * 119.96035 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.92723 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.95923 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.03870 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2850 3.7848 -0.0415 9 7 5.3966 3.1098 0.0468 10 6 6.2902 2.0721 -0.0255 11 1 6.2551 1.3861 -0.8589 12 6 7.2405 1.9033 0.9733 13 7 7.1697 2.6162 2.0750 14 14 8.6193 0.6628 0.7505 15 1 9.4187 1.0213 -0.4485 16 1 9.4938 0.6739 1.9507 17 1 8.0411 -0.6934 0.5725 18 6 5.8590 4.4234 0.1688 19 6 7.2183 4.6723 0.3152 20 6 7.6716 5.9711 0.4349 21 6 6.7748 7.0236 0.4087 22 6 5.4212 6.7794 0.2631 23 6 4.9606 5.4831 0.1439 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8938 3.1912 1.2495 30 1 0.4400 2.1637 1.2493 31 1 1.8934 1.6499 2.1392 32 1 1.8932 1.6500 -2.1393 33 1 0.4399 2.1637 -1.2492 34 1 1.8937 3.1912 -1.2495 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 7.8721 2.5513 2.7407 38 1 7.9188 3.8507 0.3399 39 1 8.7279 6.1653 0.5492 40 1 7.1320 8.0384 0.5030 41 1 4.7236 7.6037 0.2427 42 1 3.9035 5.2932 0.0307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075083581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = -15.070135 kcal Electronic energy + Delta-G solvation = -22306.239266 eV Core-core repulsion = 19251.112007 eV Total energy + Delta-G solvation = -3055.127259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65220 -39.55111 -37.86248 -36.71199 -33.79589 -31.94878 -31.29555 -30.52574 -28.46576 -28.06243 -26.95728 -24.84634 -23.36113 -22.75260 -21.12549 -19.78340 -18.99080 -17.92253 -17.34268 -16.84341 -16.25440 -16.10757 -15.64890 -15.58135 -15.31477 -14.68715 -14.61708 -14.37830 -14.04900 -13.80655 -13.69175 -13.28699 -13.06266 -12.96269 -12.82822 -12.64232 -12.52800 -12.38723 -12.21341 -12.09206 -11.86381 -11.74679 -11.42350 -11.26671 -11.25514 -10.91430 -10.50487 -9.63564 -9.50118 -8.68014 -8.09870 -6.41860 0.73342 0.83897 1.42249 1.44829 1.53366 2.05575 2.26876 2.85897 2.95171 3.39178 3.91679 3.98523 4.03091 4.29854 4.33240 4.47472 4.48725 4.59283 4.60856 4.73592 4.85405 4.89262 4.92876 4.98511 4.99701 5.05465 5.13929 5.19155 5.19998 5.26181 5.30281 5.32598 5.37229 5.43695 5.55832 5.68883 5.78239 5.82802 5.93808 5.95061 6.13197 6.25484 6.67154 7.03273 7.51256 7.88054 8.65934 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.007401 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.332890 B = 3782.160589 C = 5269.135301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.044 4.044 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.100 4.100 7 C 0.484 3.516 8 O -0.565 6.565 9 N -0.403 5.403 10 C -0.378 4.378 11 H 0.096 0.904 12 C 0.022 3.978 13 N -0.877 5.877 14 Si 0.975 3.025 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.257 1.257 18 C 0.154 3.846 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.168 4.168 22 C -0.120 4.120 23 C -0.218 4.218 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.273 0.727 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 -2.680 -3.260 6.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.045 4.045 4 C -0.201 4.201 5 C -0.203 4.203 6 C -0.139 4.139 7 C 0.278 3.722 8 O -0.450 6.450 9 N -0.111 5.111 10 C -0.505 4.505 11 H 0.114 0.886 12 C -0.184 4.184 13 N -0.510 5.510 14 Si 0.798 3.202 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.181 1.181 18 C 0.057 3.943 19 C -0.152 4.152 20 C -0.145 4.145 21 C -0.187 4.187 22 C -0.139 4.139 23 C -0.237 4.237 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.697 -2.362 -3.060 6.885 hybrid contribution 1.203 -0.483 0.367 1.347 sum -4.494 -2.845 -2.692 5.961 Atomic orbital electron populations 1.21838 0.94622 1.01999 1.02154 1.21539 0.96987 0.94175 1.01997 1.20314 0.91641 0.96197 0.96340 1.22007 1.00992 1.00971 0.96175 1.22057 1.00954 1.01463 0.95845 1.21445 0.96366 0.92476 1.03623 1.21566 0.81587 0.92553 0.76472 1.90039 1.55658 1.46030 1.53298 1.41327 1.05314 1.04007 1.60413 1.19525 1.14757 1.08140 1.08069 0.88644 1.26322 1.01093 0.98136 0.92886 1.70140 1.33084 1.40574 1.07228 0.85272 0.77856 0.79137 0.77977 1.18939 1.20780 1.18135 1.18690 0.93534 0.85354 0.96736 1.21063 0.94676 0.97133 1.02328 1.21135 1.00015 0.92150 1.01208 1.21186 0.93269 0.99159 1.05123 1.21246 0.96138 0.96132 1.00353 1.22890 1.03219 0.92257 1.05350 0.91745 0.92653 0.92168 0.91482 0.92291 0.92996 0.91378 0.94376 0.93388 0.91627 0.92279 0.89232 0.90435 0.91739 0.86765 0.85207 0.84259 0.84787 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.21 71.98 0.66 -2.45 16 2 C -0.11 -2.77 4.99 30.59 0.15 -2.62 16 3 C -0.04 -1.42 0.54 -52.18 -0.03 -1.44 16 4 C -0.14 -4.86 7.82 71.98 0.56 -4.29 16 5 C -0.15 -4.56 7.82 71.98 0.56 -4.00 16 6 C -0.10 -3.83 3.58 29.85 0.11 -3.73 16 7 C 0.48 22.68 6.98 87.66 0.61 23.29 16 8 O -0.56 -26.81 7.74 -3.03 -0.02 -26.84 16 9 N -0.40 -20.59 2.62 -458.89 -1.20 -21.79 16 10 C -0.38 -18.82 7.64 84.02 0.64 -18.18 16 11 H 0.10 4.50 7.76 -2.91 -0.02 4.48 16 12 C 0.02 1.07 3.48 84.91 0.30 1.36 16 13 N -0.88 -46.47 11.40 21.65 0.25 -46.22 16 14 Si 0.98 38.18 29.57 68.60 2.03 40.21 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 18 C 0.15 7.93 6.05 38.22 0.23 8.16 16 19 C -0.13 -6.43 7.87 22.41 0.18 -6.26 16 20 C -0.13 -5.25 10.04 22.25 0.22 -5.03 16 21 C -0.17 -6.38 10.04 22.30 0.22 -6.15 16 22 C -0.12 -4.88 10.04 22.25 0.22 -4.65 16 23 C -0.22 -10.45 9.06 22.40 0.20 -10.25 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.17 6.43 -2.39 -0.02 1.15 16 26 H 0.06 1.21 6.43 -2.39 -0.02 1.20 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 2.09 5.59 -2.39 -0.01 2.07 16 30 H 0.07 1.94 6.43 -2.39 -0.02 1.92 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.75 6.43 -2.39 -0.02 1.73 16 34 H 0.06 2.22 5.43 -2.39 -0.01 2.21 16 35 H 0.09 3.24 8.01 -2.39 -0.02 3.23 16 36 H 0.08 3.16 8.11 -2.39 -0.02 3.14 16 37 H 0.27 13.77 8.32 -92.71 -0.77 12.99 16 38 H 0.11 5.87 5.15 -2.91 -0.02 5.85 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.17 8.20 4.50 -64.52 -0.29 7.91 16 Total: -1.00 -58.29 321.29 6.63 -51.66 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.73 Total: 39.22 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.85 Total: -36.24 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.96 Total: -68.01 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.02 Total: -26.84 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -58.29 6.63 -51.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075083581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.591 kcal (2) G-P(sol) polarization free energy of solvation -58.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds