Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.52992 * 109.47017 * 305.50234 * 3 2 1 5 5 C 1.53004 * 109.46998 * 184.00331 * 4 3 2 6 6 C 1.50701 * 109.47071 * 185.50133 * 3 2 1 7 7 O 1.21291 * 120.00586 * 234.61848 * 6 3 2 8 8 N 1.34777 * 119.99781 * 54.62034 * 6 3 2 9 9 C 1.46503 * 119.99984 * 184.64822 * 8 6 3 10 10 C 1.37093 * 120.00160 * 4.65736 * 8 6 3 11 11 H 1.08007 * 120.00191 * 2.85963 * 10 8 6 12 12 C 1.38955 * 120.00546 * 182.86786 * 10 8 6 13 13 N 1.31413 * 119.99363 * 5.35052 * 12 10 8 14 14 Si 1.86796 * 120.00226 * 185.35204 * 12 10 8 15 15 H 1.48507 * 109.47032 * 90.00182 * 14 12 10 16 16 H 1.48507 * 109.46857 * 209.99348 * 14 12 10 17 17 H 1.48491 * 109.47292 * 329.99900 * 14 12 10 18 18 C 1.50703 * 109.47102 * 65.50627 * 3 2 1 19 19 C 1.38232 * 120.00008 * 65.32196 * 18 3 2 20 20 C 1.38233 * 119.99667 * 179.97438 * 19 18 3 21 21 C 1.38241 * 120.00253 * 359.97438 * 20 19 18 22 22 C 1.38230 * 119.99650 * 0.27835 * 21 20 19 23 23 C 1.38231 * 120.00189 * 359.50740 * 22 21 20 24 24 H 1.08997 * 109.47802 * 185.25173 * 1 2 3 25 25 H 1.09005 * 109.47309 * 305.25365 * 1 2 3 26 26 H 1.08998 * 109.47309 * 65.25178 * 1 2 3 27 27 H 1.08998 * 109.47222 * 239.99845 * 2 1 3 28 28 H 1.09006 * 109.46714 * 120.00148 * 2 1 3 29 29 H 1.08999 * 109.47277 * 304.00254 * 4 3 2 30 30 H 1.08999 * 109.47487 * 64.00729 * 4 3 2 31 31 H 1.09000 * 109.47219 * 306.51891 * 5 4 3 32 32 H 1.09001 * 109.47160 * 66.52257 * 5 4 3 33 33 H 1.09001 * 109.46859 * 186.51923 * 5 4 3 34 34 H 1.09001 * 109.47149 * 1.35851 * 9 8 6 35 35 H 1.09003 * 109.47009 * 121.36053 * 9 8 6 36 36 H 1.09005 * 109.47564 * 241.35554 * 9 8 6 37 37 H 0.97004 * 119.99752 * 180.02562 * 13 12 10 38 38 H 1.07996 * 120.00239 * 359.97438 * 19 18 3 39 39 H 1.08004 * 120.00115 * 180.02562 * 20 19 18 40 40 H 1.07995 * 119.99918 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.99812 * 179.72377 * 22 21 20 42 42 H 1.08000 * 120.00378 * 180.27402 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4202 2.2025 -1.1743 5 6 2.0058 3.6148 -1.2337 6 6 3.5408 1.4446 -0.1362 7 8 4.2232 2.0259 0.6808 8 7 4.1249 0.8005 -1.1660 9 6 5.5854 0.7157 -1.2433 10 6 3.3523 0.2248 -2.1413 11 1 2.2775 0.3269 -2.1093 12 6 3.9518 -0.4902 -3.1710 13 7 5.2483 -0.7042 -3.1540 14 14 2.9149 -1.1469 -4.5791 15 1 2.8461 -0.1301 -5.6593 16 1 3.5301 -2.3906 -5.1086 17 1 1.5446 -1.4421 -4.0891 18 6 1.6521 2.1124 1.2930 19 6 2.1852 1.6685 2.4886 20 6 1.8297 2.2834 3.6745 21 6 0.9415 3.3427 3.6647 22 6 0.4044 3.7832 2.4696 23 6 0.7632 3.1712 1.2833 24 1 -0.3634 -1.0233 0.0941 25 1 -0.3634 0.5932 0.8392 26 1 -0.3634 0.4302 -0.9332 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 1.6414 1.6781 -2.1039 30 1 0.3403 2.2624 -1.0390 31 1 1.8867 4.0986 -0.2643 32 1 3.0652 3.5586 -1.4841 33 1 1.4827 4.1932 -1.9952 34 1 6.0243 1.2065 -0.3746 35 1 5.8881 -0.3313 -1.2607 36 1 5.9305 1.2087 -2.1522 37 1 5.6669 -1.2030 -3.8730 38 1 2.8794 0.8412 2.4962 39 1 2.2466 1.9368 4.6086 40 1 0.6642 3.8233 4.5912 41 1 -0.2929 4.6078 2.4625 42 1 0.3470 3.5182 0.3491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075196577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = 14.786196 kcal Electronic energy + Delta-G solvation = -22975.996106 eV Core-core repulsion = 19922.163515 eV Total energy + Delta-G solvation = -3053.832591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30784 -37.98476 -35.44562 -34.82533 -31.70793 -31.39726 -30.21200 -29.70478 -27.33628 -25.84844 -24.17465 -22.70163 -21.99943 -21.60603 -20.06178 -18.59011 -17.69278 -16.22301 -15.52738 -14.77320 -14.68202 -14.46560 -14.22251 -13.82314 -13.73852 -13.47430 -13.31069 -12.69681 -12.54441 -12.14253 -11.87764 -11.67734 -11.58137 -11.45543 -11.40324 -11.10814 -11.05412 -10.94176 -10.76393 -10.55689 -10.40857 -10.31519 -10.28080 -9.77497 -9.21714 -9.07557 -8.41447 -8.22780 -8.05384 -7.86760 -6.27396 -3.88378 1.85231 1.90683 3.06732 3.15895 3.17372 3.93202 4.02009 4.25947 4.88258 5.06114 5.18180 5.33133 5.36692 5.47759 5.53015 5.62832 5.79109 5.85643 5.88648 5.95562 6.00339 6.07580 6.26715 6.31778 6.40631 6.47932 6.50240 6.54273 6.56073 6.72981 6.79360 6.86447 6.90876 6.93577 6.99072 7.07886 7.24497 7.28113 7.41554 7.47894 7.54931 7.77268 8.39609 9.05916 9.56987 9.96371 10.63274 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.006677 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.972602 B = 4192.276393 C = 4565.926409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.018 4.018 4 C -0.125 4.125 5 C -0.159 4.159 6 C 0.465 3.535 7 O -0.606 6.606 8 N -0.443 5.443 9 C 0.120 3.880 10 C -0.338 4.338 11 H 0.122 0.878 12 C 0.032 3.968 13 N -0.874 5.874 14 Si 0.918 3.082 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.033 4.033 19 C -0.081 4.081 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.123 4.123 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.266 0.734 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 2.929 4.752 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.021 4.021 4 C -0.162 4.162 5 C -0.216 4.216 6 C 0.253 3.747 7 O -0.493 6.493 8 N -0.161 5.161 9 C -0.023 4.023 10 C -0.465 4.465 11 H 0.139 0.861 12 C -0.172 4.172 13 N -0.513 5.513 14 Si 0.744 3.256 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.033 4.033 19 C -0.099 4.099 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.550 3.080 4.985 10.365 hybrid contribution -0.282 -0.367 -0.846 0.965 sum -8.832 2.713 4.139 10.124 Atomic orbital electron populations 1.21809 0.96508 1.00813 1.01445 1.22018 0.95167 0.94830 1.05024 1.19474 0.94409 0.95815 0.92437 1.21902 0.98834 0.96208 0.99285 1.22025 1.01663 0.96517 1.01385 1.19577 0.88632 0.83405 0.83104 1.90535 1.64770 1.49147 1.44811 1.43618 1.06237 1.46238 1.19971 1.21589 0.79939 1.02587 0.98186 1.20234 0.92560 1.30911 1.02781 0.86074 1.25323 0.96022 0.96900 0.98906 1.70216 1.09202 1.39404 1.32487 0.86057 0.79729 0.78532 0.81273 1.20231 1.20761 1.19194 1.19491 0.94887 0.94851 0.94071 1.20929 0.97521 0.99696 0.91798 1.21030 0.98716 0.97082 0.97805 1.20964 0.98826 0.97867 0.97556 1.20985 1.00905 1.00373 0.92811 1.21271 0.98558 0.96196 0.98094 0.93323 0.93201 0.92691 0.86946 0.92641 0.88647 0.92007 0.91986 0.92426 0.93512 0.94909 0.90238 0.93274 0.92341 0.86556 0.86878 0.87070 0.86915 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.13 37.15 0.34 -1.90 16 2 C -0.13 -2.44 4.56 -26.74 -0.12 -2.56 16 3 C -0.02 -0.35 0.16 -156.81 -0.02 -0.38 16 4 C -0.13 -2.22 3.55 -26.73 -0.09 -2.32 16 5 C -0.16 -2.83 8.69 37.16 0.32 -2.51 16 6 C 0.47 11.03 4.87 -10.98 -0.05 10.98 16 7 O -0.61 -15.96 14.27 5.55 0.08 -15.88 16 8 N -0.44 -10.98 3.02 -122.18 -0.37 -11.35 16 9 C 0.12 3.01 8.89 59.85 0.53 3.54 16 10 C -0.34 -8.06 6.87 -14.93 -0.10 -8.16 16 11 H 0.12 2.66 2.92 -52.48 -0.15 2.51 16 12 C 0.03 0.78 5.44 -17.47 -0.09 0.69 16 13 N -0.87 -22.17 9.49 55.50 0.53 -21.65 16 14 Si 0.92 18.74 29.56 -169.99 -5.02 13.72 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 C -0.03 -0.60 3.06 -104.62 -0.32 -0.92 16 19 C -0.08 -1.52 7.84 -39.59 -0.31 -1.83 16 20 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 21 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 22 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 23 C -0.12 -2.01 7.22 -39.58 -0.29 -2.30 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.74 7.17 -51.93 -0.37 0.37 16 26 H 0.05 0.78 6.75 -51.93 -0.35 0.43 16 27 H 0.11 2.26 4.52 -51.93 -0.23 2.02 16 28 H 0.05 1.03 7.55 -51.93 -0.39 0.64 16 29 H 0.10 1.81 5.00 -51.93 -0.26 1.55 16 30 H 0.06 0.94 5.56 -51.93 -0.29 0.65 16 31 H 0.06 1.09 5.11 -51.93 -0.27 0.83 16 32 H 0.06 1.20 7.36 -51.93 -0.38 0.81 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.81 6.91 -51.93 -0.36 0.45 16 35 H 0.08 2.06 6.58 -51.93 -0.34 1.71 16 36 H 0.05 1.26 7.48 -51.93 -0.39 0.87 16 37 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 38 H 0.12 2.30 7.55 -52.49 -0.40 1.90 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.13 1.90 4.88 -52.49 -0.26 1.65 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -27.69 312.19 -7.18 -34.87 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.69 Total: 10.41 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.41 Total: -14.81 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.16 Total: -33.00 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.88 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.69 -7.18 -34.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.652 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds