Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53125 * 109.52323 * 2 1 4 4 C 1.53170 * 109.20820 * 177.56258 * 3 2 1 5 5 N 1.46844 * 109.55619 * 300.85365 * 4 3 2 6 6 C 1.46899 * 111.00095 * 185.84226 * 5 4 3 7 7 C 1.50697 * 109.47268 * 45.79082 * 6 5 4 8 8 C 1.38298 * 119.93284 * 269.73257 * 7 6 5 9 9 C 1.38098 * 120.07093 * 179.72422 * 8 7 6 10 10 C 1.38883 * 119.92793 * 0.54368 * 9 8 7 11 11 O 1.35750 * 120.06821 * 179.74837 * 10 9 8 12 12 C 1.34832 * 116.99986 * 174.44215 * 11 10 9 13 13 H 1.08000 * 119.99710 * 5.05289 * 12 11 10 14 14 C 1.38650 * 119.99861 * 185.05844 * 12 11 10 15 15 N 1.31556 * 119.99699 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00189 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46842 * 90.00334 * 16 14 12 18 18 H 1.48501 * 109.46918 * 209.99934 * 16 14 12 19 19 H 1.48490 * 109.47202 * 330.00236 * 16 14 12 20 20 C 1.38876 * 119.85975 * 359.72776 * 10 9 8 21 21 C 1.38096 * 119.93376 * 359.97438 * 20 10 9 22 22 C 1.46850 * 111.19421 * 61.74511 * 5 4 3 23 23 C 1.53037 * 109.52612 * 298.25498 * 22 5 4 24 24 H 1.08998 * 109.47110 * 300.12694 * 1 2 3 25 25 H 1.08997 * 109.47112 * 60.12874 * 1 2 3 26 26 H 1.09001 * 109.46962 * 180.13441 * 1 2 3 27 27 H 1.08996 * 109.52890 * 239.87241 * 2 1 3 28 28 H 1.09003 * 109.49907 * 297.56630 * 3 2 1 29 29 H 1.08997 * 109.50417 * 57.67706 * 3 2 1 30 30 H 1.09006 * 109.43890 * 180.83178 * 4 3 2 31 31 H 1.08997 * 109.43671 * 60.88171 * 4 3 2 32 32 H 1.08997 * 109.47217 * 165.79569 * 6 5 4 33 33 H 1.08999 * 109.46973 * 285.79432 * 6 5 4 34 34 H 1.08003 * 119.96727 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.03462 * 180.26826 * 9 8 7 36 36 H 0.97003 * 120.00343 * 179.97438 * 15 14 12 37 37 H 1.08005 * 120.03271 * 179.97438 * 20 10 9 38 38 H 1.08002 * 119.96742 * 180.02562 * 21 20 10 39 39 H 1.09008 * 109.46074 * 178.24093 * 22 5 4 40 40 H 1.08995 * 109.45271 * 58.26760 * 22 5 4 41 41 H 1.08999 * 109.50146 * 299.24309 * 23 22 5 42 42 H 1.09002 * 109.50362 * 179.12042 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5721 1.4352 0.0615 5 7 4.0115 0.7400 1.2780 6 6 5.4685 0.8335 1.4407 7 6 5.9117 2.2522 1.1923 8 6 6.2658 2.6513 -0.0836 9 6 6.6669 3.9522 -0.3155 10 6 6.7253 4.8572 0.7364 11 8 7.1241 6.1354 0.5126 12 6 7.0483 6.9911 1.5518 13 1 6.7609 6.6304 2.5284 14 6 7.3393 8.3340 1.3667 15 7 7.2649 9.1690 2.3806 16 14 7.8370 8.9577 -0.3223 17 1 6.6250 9.3722 -1.0737 18 1 8.7480 10.1206 -0.1719 19 1 8.5333 7.8760 -1.0640 20 6 6.3744 4.4519 2.0175 21 6 5.9683 3.1512 2.2418 22 6 3.5708 -0.6608 1.2775 23 6 2.0417 -0.7160 1.2531 24 1 -0.3633 0.5158 0.8888 25 1 -0.3633 0.5118 -0.8911 26 1 -0.3633 -1.0277 0.0024 27 1 1.8943 -0.5156 -0.8885 28 1 1.7151 1.9450 -0.9109 29 1 1.6455 1.9698 0.8682 30 1 3.9399 2.4612 0.0766 31 1 3.9676 0.9205 -0.8141 32 1 5.7405 0.5400 2.4545 33 1 5.9570 0.1701 0.7270 34 1 6.2247 1.9458 -0.9004 35 1 6.9391 4.2643 -1.3129 36 1 7.4688 10.1085 2.2512 37 1 6.4192 5.1532 2.8377 38 1 5.6949 2.8355 3.2378 39 1 3.9379 -1.1574 2.1758 40 1 3.9665 -1.1655 0.3962 41 1 1.6456 -0.2233 2.1410 42 1 1.7152 -1.7558 1.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077253165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -12.672874 kcal Electronic energy + Delta-G solvation = -21069.913414 eV Core-core repulsion = 18014.890108 eV Total energy + Delta-G solvation = -3055.023306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67907 -38.78531 -36.84048 -34.50939 -32.40008 -30.95313 -30.44868 -30.03894 -27.81047 -25.58425 -24.13269 -23.16126 -22.15577 -21.62111 -20.22884 -19.62762 -17.88249 -17.24963 -15.97553 -15.29821 -15.03911 -14.62495 -14.44651 -14.31228 -14.00618 -13.87849 -13.76167 -13.34068 -13.13891 -12.65182 -12.54006 -12.39538 -12.21557 -12.14218 -11.84754 -11.56993 -11.24738 -11.20331 -10.81451 -10.76372 -10.70366 -10.60314 -10.31658 -10.20177 -10.09516 -9.38614 -8.87237 -8.25454 -8.19495 -7.29769 -6.42182 -4.08776 2.11478 2.17454 3.21373 3.25143 3.39607 4.01937 4.23041 4.55312 4.67749 4.73815 4.75749 4.84726 5.09889 5.11749 5.25452 5.33604 5.35813 5.47122 5.48107 5.56930 5.57451 5.65181 5.67361 5.77006 5.79151 5.86600 5.94817 5.99474 6.03993 6.12575 6.14522 6.26015 6.34150 6.39609 6.56229 6.78995 6.99457 7.15335 7.25772 7.29279 7.33849 7.60677 7.80004 8.03235 8.93048 9.55352 10.65452 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.003666 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.845073 B = 7635.983358 C = 7915.068840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.112 4.112 4 C 0.053 3.947 5 N -0.533 5.533 6 C 0.112 3.888 7 C -0.177 4.177 8 C -0.071 4.071 9 C -0.193 4.193 10 C 0.161 3.839 11 O -0.217 6.217 12 C -0.389 4.389 13 H 0.107 0.893 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.260 1.260 20 C -0.222 4.222 21 C -0.051 4.051 22 C 0.055 3.945 23 C -0.110 4.110 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 -18.181 -4.118 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.150 4.150 4 C -0.075 4.075 5 N -0.258 5.258 6 C -0.015 4.015 7 C -0.178 4.178 8 C -0.089 4.089 9 C -0.213 4.213 10 C 0.109 3.891 11 O -0.122 6.122 12 C -0.465 4.465 13 H 0.124 0.876 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.241 4.241 21 C -0.070 4.070 22 C -0.073 4.073 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.797 -17.600 -3.834 20.046 hybrid contribution 0.582 0.044 -1.176 1.313 sum -8.215 -17.556 -5.011 20.020 Atomic orbital electron populations 1.21810 0.95338 1.01306 1.01831 1.21195 0.95413 0.96687 0.98024 1.21691 0.95288 0.95897 1.02120 1.22214 0.94922 1.00514 0.89844 1.62042 1.12524 1.13014 1.38173 1.20826 0.86392 0.93617 1.00642 1.19164 1.09311 0.95371 0.93920 1.20497 0.98158 0.94663 0.95629 1.20161 1.10187 0.93161 0.97757 1.19130 0.91857 0.85132 0.92970 1.83569 1.73405 1.16048 1.39214 1.20777 1.48028 0.88479 0.89215 0.87586 1.24466 0.96065 0.94423 0.99027 1.69646 1.46843 1.04449 1.30762 0.86184 0.79077 0.78617 0.83042 1.19873 1.20781 1.18388 1.21284 1.08238 0.97085 0.97536 1.20635 0.96166 0.92426 0.97763 1.22071 0.95690 0.89304 1.00250 1.21632 0.94816 0.99803 0.98519 0.92572 0.92832 0.93022 0.91875 0.91823 0.91096 0.89123 0.95631 0.90711 0.95080 0.87404 0.86629 0.91041 0.84959 0.87103 0.91050 0.95409 0.91076 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.20 37.16 0.34 -0.87 16 2 C -0.09 -0.91 2.78 -90.49 -0.25 -1.17 16 3 C -0.11 -1.28 5.39 -26.58 -0.14 -1.43 16 4 C 0.05 0.69 4.58 -3.77 -0.02 0.67 16 5 N -0.53 -6.94 4.80 -236.03 -1.13 -8.07 16 6 C 0.11 1.51 5.43 -4.98 -0.03 1.48 16 7 C -0.18 -2.89 4.12 -104.58 -0.43 -3.32 16 8 C -0.07 -1.18 7.80 -39.61 -0.31 -1.49 16 9 C -0.19 -3.79 9.99 -39.39 -0.39 -4.18 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 O -0.22 -5.73 8.59 0.04 0.00 -5.73 16 12 C -0.39 -10.98 9.95 30.88 0.31 -10.67 16 13 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 14 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 15 N -0.88 -25.41 13.96 55.48 0.77 -24.64 16 16 Si 0.91 21.66 28.62 -169.99 -4.86 16.80 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.22 -4.78 9.17 -39.40 -0.36 -5.14 16 21 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 22 C 0.05 0.58 5.42 -3.83 -0.02 0.56 16 23 C -0.11 -1.05 5.38 -26.65 -0.14 -1.19 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.41 5.65 -51.93 -0.29 1.12 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.03 0.40 8.02 -51.93 -0.42 -0.02 16 34 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.28 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.13 3.01 5.64 -52.48 -0.30 2.71 16 38 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.07 0.70 8.12 -51.92 -0.42 0.28 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -28.56 333.19 -9.15 -37.71 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.76 Total: 1.82 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.19 Total: -22.92 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: -0.36 Total: -32.71 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: 0.00 Total: -5.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.56 -9.15 -37.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077253165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.040 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds