Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53125 * 109.52323 * 2 1 4 4 C 1.53170 * 109.20820 * 177.56258 * 3 2 1 5 5 N 1.46844 * 109.55619 * 300.85365 * 4 3 2 6 6 C 1.46899 * 111.00095 * 185.84226 * 5 4 3 7 7 C 1.50697 * 109.47268 * 45.79082 * 6 5 4 8 8 C 1.38298 * 119.93284 * 269.73257 * 7 6 5 9 9 C 1.38098 * 120.07093 * 179.72422 * 8 7 6 10 10 C 1.38883 * 119.92793 * 0.54368 * 9 8 7 11 11 O 1.35750 * 120.06821 * 179.74837 * 10 9 8 12 12 C 1.34832 * 116.99986 * 174.44215 * 11 10 9 13 13 H 1.08000 * 119.99710 * 5.05289 * 12 11 10 14 14 C 1.38650 * 119.99861 * 185.05844 * 12 11 10 15 15 N 1.31556 * 119.99699 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00189 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46842 * 90.00334 * 16 14 12 18 18 H 1.48501 * 109.46918 * 209.99934 * 16 14 12 19 19 H 1.48490 * 109.47202 * 330.00236 * 16 14 12 20 20 C 1.38876 * 119.85975 * 359.72776 * 10 9 8 21 21 C 1.38096 * 119.93376 * 359.97438 * 20 10 9 22 22 C 1.46850 * 111.19421 * 61.74511 * 5 4 3 23 23 C 1.53037 * 109.52612 * 298.25498 * 22 5 4 24 24 H 1.08998 * 109.47110 * 300.12694 * 1 2 3 25 25 H 1.08997 * 109.47112 * 60.12874 * 1 2 3 26 26 H 1.09001 * 109.46962 * 180.13441 * 1 2 3 27 27 H 1.08996 * 109.52890 * 239.87241 * 2 1 3 28 28 H 1.09003 * 109.49907 * 297.56630 * 3 2 1 29 29 H 1.08997 * 109.50417 * 57.67706 * 3 2 1 30 30 H 1.09006 * 109.43890 * 180.83178 * 4 3 2 31 31 H 1.08997 * 109.43671 * 60.88171 * 4 3 2 32 32 H 1.08997 * 109.47217 * 165.79569 * 6 5 4 33 33 H 1.08999 * 109.46973 * 285.79432 * 6 5 4 34 34 H 1.08003 * 119.96727 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.03462 * 180.26826 * 9 8 7 36 36 H 0.97003 * 120.00343 * 179.97438 * 15 14 12 37 37 H 1.08005 * 120.03271 * 179.97438 * 20 10 9 38 38 H 1.08002 * 119.96742 * 180.02562 * 21 20 10 39 39 H 1.09008 * 109.46074 * 178.24093 * 22 5 4 40 40 H 1.08995 * 109.45271 * 58.26760 * 22 5 4 41 41 H 1.08999 * 109.50146 * 299.24309 * 23 22 5 42 42 H 1.09002 * 109.50362 * 179.12042 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5721 1.4352 0.0615 5 7 4.0115 0.7400 1.2780 6 6 5.4685 0.8335 1.4407 7 6 5.9117 2.2522 1.1923 8 6 6.2658 2.6513 -0.0836 9 6 6.6669 3.9522 -0.3155 10 6 6.7253 4.8572 0.7364 11 8 7.1241 6.1354 0.5126 12 6 7.0483 6.9911 1.5518 13 1 6.7609 6.6304 2.5284 14 6 7.3393 8.3340 1.3667 15 7 7.2649 9.1690 2.3806 16 14 7.8370 8.9577 -0.3223 17 1 6.6250 9.3722 -1.0737 18 1 8.7480 10.1206 -0.1719 19 1 8.5333 7.8760 -1.0640 20 6 6.3744 4.4519 2.0175 21 6 5.9683 3.1512 2.2418 22 6 3.5708 -0.6608 1.2775 23 6 2.0417 -0.7160 1.2531 24 1 -0.3633 0.5158 0.8888 25 1 -0.3633 0.5118 -0.8911 26 1 -0.3633 -1.0277 0.0024 27 1 1.8943 -0.5156 -0.8885 28 1 1.7151 1.9450 -0.9109 29 1 1.6455 1.9698 0.8682 30 1 3.9399 2.4612 0.0766 31 1 3.9676 0.9205 -0.8141 32 1 5.7405 0.5400 2.4545 33 1 5.9570 0.1701 0.7270 34 1 6.2247 1.9458 -0.9004 35 1 6.9391 4.2643 -1.3129 36 1 7.4688 10.1085 2.2512 37 1 6.4192 5.1532 2.8377 38 1 5.6949 2.8355 3.2378 39 1 3.9379 -1.1574 2.1758 40 1 3.9665 -1.1655 0.3962 41 1 1.6456 -0.2233 2.1410 42 1 1.7152 -1.7558 1.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077253165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -28.807513 kcal Electronic energy + Delta-G solvation = -21070.613064 eV Core-core repulsion = 18014.890108 eV Total energy + Delta-G solvation = -3055.722956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09859 -40.07182 -38.35971 -35.56192 -34.43621 -31.96795 -31.92449 -31.31451 -28.92485 -27.35125 -25.42515 -24.18727 -23.57788 -22.72548 -21.62823 -20.49792 -19.80401 -19.08859 -16.98269 -16.71936 -16.52822 -15.92881 -15.68136 -15.59090 -15.33104 -15.28162 -15.06845 -14.62264 -14.37727 -14.20631 -14.06933 -13.86018 -13.34045 -13.12425 -12.91587 -12.72952 -12.65843 -12.38041 -12.33945 -12.15377 -12.03456 -11.87640 -11.50185 -11.27809 -11.13012 -11.06831 -10.89111 -9.79613 -9.25317 -8.90448 -8.50539 -6.23291 0.55316 0.60762 1.30857 1.35054 1.51504 2.27581 2.69708 2.97326 3.11699 3.30263 3.84281 3.93820 3.94196 4.00864 4.05000 4.15170 4.38139 4.42075 4.50973 4.54768 4.58578 4.66277 4.69923 4.79567 4.83664 4.88900 4.90570 4.96818 5.01990 5.07882 5.18691 5.24317 5.30258 5.31356 5.37220 5.37884 5.55918 5.58285 5.74750 5.81574 5.89960 6.18807 6.21996 6.32301 6.83701 7.57846 8.61196 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.003666 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.845073 B = 7635.983358 C = 7915.068840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.111 4.111 4 C 0.054 3.946 5 N -0.545 5.545 6 C 0.113 3.887 7 C -0.149 4.149 8 C -0.060 4.060 9 C -0.191 4.191 10 C 0.122 3.878 11 O -0.245 6.245 12 C -0.400 4.400 13 H 0.080 0.920 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.262 1.262 20 C -0.237 4.237 21 C -0.055 4.055 22 C 0.054 3.946 23 C -0.107 4.107 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.285 0.715 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.060 0.940 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 -21.577 -5.906 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.149 4.149 4 C -0.074 4.074 5 N -0.271 5.271 6 C -0.013 4.013 7 C -0.150 4.150 8 C -0.078 4.078 9 C -0.210 4.210 10 C 0.073 3.927 11 O -0.152 6.152 12 C -0.476 4.476 13 H 0.097 0.903 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.187 1.187 20 C -0.257 4.257 21 C -0.074 4.074 22 C -0.073 4.073 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.550 -21.049 -5.618 23.787 hybrid contribution 0.680 0.730 -0.575 1.151 sum -8.870 -20.319 -6.193 23.019 Atomic orbital electron populations 1.21785 0.94424 1.02148 1.01701 1.21173 0.96180 0.95201 0.98409 1.21675 0.94292 0.97353 1.01617 1.22142 0.95947 0.98916 0.90353 1.62025 1.11876 1.14900 1.38271 1.20867 0.87133 0.91266 1.02084 1.19615 1.05631 0.96644 0.93096 1.20897 0.96117 0.93946 0.96876 1.20468 1.09411 0.93655 0.97459 1.19657 0.93796 0.84705 0.94584 1.83511 1.76137 1.17255 1.38335 1.20705 1.48410 0.89444 0.89058 0.90278 1.25290 0.96233 0.94431 1.02896 1.69732 1.48961 1.04995 1.32758 0.85205 0.79067 0.78127 0.78239 1.19052 1.19154 1.18676 1.21269 1.09454 0.98323 0.96626 1.20865 0.95695 0.91236 0.99566 1.22160 0.96328 0.87636 1.01176 1.21631 0.94103 1.00894 0.97892 0.93107 0.92640 0.91682 0.91250 0.91441 0.92675 0.92028 0.94662 0.89499 0.93081 0.83636 0.85367 0.90554 0.87596 0.85151 0.89985 0.94521 0.92107 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.20 71.98 0.66 -1.36 16 2 C -0.09 -1.48 2.78 -10.71 -0.03 -1.51 16 3 C -0.11 -2.33 5.39 30.69 0.17 -2.17 16 4 C 0.05 1.28 4.58 86.37 0.40 1.67 16 5 N -0.55 -12.39 4.80 -900.66 -4.32 -16.72 16 6 C 0.11 2.61 5.43 85.56 0.46 3.07 16 7 C -0.15 -4.49 4.12 -19.84 -0.08 -4.58 16 8 C -0.06 -1.83 7.80 22.25 0.17 -1.66 16 9 C -0.19 -7.29 9.99 22.39 0.22 -7.07 16 10 C 0.12 5.76 6.65 22.58 0.15 5.91 16 11 O -0.24 -13.48 8.59 -22.76 -0.20 -13.67 16 12 C -0.40 -23.93 9.95 67.92 0.68 -23.25 16 13 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 14 C 0.01 0.57 5.49 84.83 0.47 1.04 16 15 N -0.92 -55.81 13.96 21.61 0.30 -55.51 16 16 Si 0.97 45.83 28.62 68.60 1.96 47.80 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 20 C -0.24 -10.66 9.17 22.39 0.21 -10.46 16 21 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 22 C 0.05 0.94 5.42 86.33 0.47 1.41 16 23 C -0.11 -1.68 5.38 30.65 0.16 -1.51 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.80 5.65 -2.38 -0.01 1.78 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.05 1.03 8.02 -2.39 -0.02 1.01 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.11 5.26 5.64 -2.91 -0.02 5.25 16 38 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 40 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.08 333.19 3.05 -62.03 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.98 Total: 18.28 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.32 Total: -42.21 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -4.02 Total: -72.23 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.20 Total: -13.67 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.80 kcal Total: -65.08 3.05 -62.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077253165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.222 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds