Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47257 * 2 1 4 4 C 1.53001 * 109.46921 * 240.00259 * 2 1 3 5 5 C 1.52995 * 109.47191 * 120.00343 * 2 1 3 6 6 C 1.53001 * 109.47512 * 59.99657 * 5 2 1 7 7 C 1.50693 * 109.47459 * 180.02562 * 6 5 2 8 8 O 1.21284 * 119.99937 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00055 * 179.97438 * 7 6 5 10 10 C 1.39234 * 119.99787 * 184.28933 * 9 7 6 11 11 C 1.39480 * 119.83810 * 324.71162 * 10 9 7 12 12 C 1.36373 * 120.17151 * 180.29688 * 11 10 9 13 13 C 1.40869 * 119.82638 * 359.48095 * 12 11 10 14 14 C 1.41149 * 120.16615 * 180.24677 * 13 12 11 15 15 H 1.08002 * 120.00564 * 215.01718 * 14 13 12 16 16 C 1.39907 * 119.99949 * 35.01923 * 14 13 12 17 17 N 1.30873 * 119.99679 * 355.54737 * 16 14 13 18 18 Si 1.86795 * 120.00282 * 175.54331 * 16 14 13 19 19 H 1.48497 * 109.47333 * 59.99949 * 18 16 14 20 20 H 1.48503 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47361 * 299.99743 * 18 16 14 22 22 C 1.40878 * 119.67448 * 0.51928 * 13 12 11 23 23 C 1.36371 * 119.82161 * 359.73123 * 22 13 12 24 24 H 1.08997 * 109.46797 * 299.99762 * 1 2 3 25 25 H 1.08996 * 109.46768 * 59.99859 * 1 2 3 26 26 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47295 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47672 * 300.00306 * 3 2 1 29 29 H 1.09005 * 109.47367 * 59.99822 * 3 2 1 30 30 H 1.08997 * 109.47089 * 299.99727 * 4 2 1 31 31 H 1.08997 * 109.47033 * 60.00065 * 4 2 1 32 32 H 1.08996 * 109.46943 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.46981 * 299.99933 * 5 2 1 34 34 H 1.08996 * 109.47130 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.46772 * 60.00148 * 6 5 2 36 36 H 1.09001 * 109.46975 * 300.00995 * 6 5 2 37 37 H 0.96994 * 119.99721 * 4.29555 * 9 7 6 38 38 H 1.07997 * 119.91386 * 0.02562 * 11 10 9 39 39 H 1.08003 * 120.08733 * 179.70254 * 12 11 10 40 40 H 0.97006 * 120.00240 * 180.02562 * 17 16 14 41 41 H 1.07991 * 120.08734 * 179.71251 * 22 13 12 42 42 H 1.08005 * 119.91371 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2492 7 6 2.0319 -2.8741 2.4799 8 8 2.7285 -2.2844 3.2787 9 7 1.7057 -4.1642 2.6935 10 6 2.0940 -4.7944 3.8728 11 6 3.3189 -4.4760 4.4589 12 6 3.7087 -5.0934 5.6107 13 6 2.8657 -6.0470 6.2144 14 6 3.2597 -6.6866 7.4094 15 1 2.9912 -7.7181 7.5838 16 6 3.9980 -5.9844 8.3681 17 7 4.3981 -4.7632 8.1203 18 14 4.4126 -6.7896 10.0018 19 1 5.2138 -8.0163 9.7598 20 1 5.1957 -5.8428 10.8357 21 1 3.1573 -7.1497 10.7089 22 6 1.6300 -6.3634 5.6164 23 6 1.2562 -5.7413 4.4619 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7209 1.2494 35 1 1.8934 -2.6776 0.3592 36 1 0.4400 -2.1638 1.2491 37 1 1.2006 -4.6537 2.0256 38 1 3.9624 -3.7418 3.9971 39 1 4.6596 -4.8493 6.0608 40 1 4.9104 -4.2763 8.7848 41 1 0.9806 -7.0968 6.0710 42 1 0.3094 -5.9831 4.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078041104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = -43.000190 kcal Electronic energy + Delta-G solvation = -20678.979954 eV Core-core repulsion = 17622.641557 eV Total energy + Delta-G solvation = -3056.338397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.76045 -38.03278 -36.99766 -34.37472 -32.86789 -31.20341 -29.45798 -28.81677 -27.45208 -27.42017 -25.45068 -23.82839 -21.38356 -20.82964 -19.44913 -18.64973 -17.25851 -16.94556 -16.17509 -15.53117 -15.10788 -14.56094 -14.42037 -14.29283 -13.92069 -13.46095 -13.23336 -12.85159 -12.60411 -12.54441 -12.06550 -12.03050 -11.85333 -11.81657 -11.67800 -11.43375 -11.20857 -11.09826 -10.92937 -10.65258 -10.62748 -10.54808 -10.46306 -9.88840 -9.85296 -9.38688 -8.95228 -8.67830 -7.49341 -6.84808 -6.56266 -4.30189 2.63434 3.04872 3.11696 3.12925 3.14971 3.40319 3.80326 4.01220 4.64211 4.67429 4.70362 4.75289 5.14981 5.18916 5.28208 5.43933 5.47953 5.51582 5.62793 5.63694 5.70242 5.76741 5.78754 5.91508 5.95621 6.07743 6.15711 6.18138 6.31375 6.37515 6.42232 6.85042 7.04372 7.07807 7.23680 7.33673 7.66807 7.72002 8.02518 8.12208 8.24971 8.37898 8.70273 8.84387 8.96390 9.05576 10.34773 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037252 B = 0.003224 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.450033 B = 8684.099221 C = 9144.249482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.092 4.092 6 C -0.141 4.141 7 C 0.495 3.505 8 O -0.529 6.529 9 N -0.657 5.657 10 C 0.006 3.994 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.100 3.900 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.808 5.808 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.204 4.204 23 C -0.115 4.115 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.394 0.606 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.278 0.722 41 H 0.096 0.904 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 6.592 -14.895 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.130 4.130 6 C -0.181 4.181 7 C 0.282 3.718 8 O -0.405 6.405 9 N -0.300 5.300 10 C -0.086 4.086 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.097 3.903 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.435 5.435 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.224 4.224 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.227 0.773 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.889 7.242 -14.212 16.683 hybrid contribution -0.231 -0.532 0.490 0.759 sum -5.119 6.710 -13.722 16.109 Atomic orbital electron populations 1.21948 0.94757 1.01868 1.01597 1.20590 0.95602 0.95583 0.95436 1.21850 1.01106 0.95290 1.01533 1.21945 1.01145 1.00298 0.96759 1.21377 1.01392 0.93116 0.97121 1.21792 1.02372 0.97245 0.96708 1.20717 0.81401 0.81765 0.87925 1.90706 1.36979 1.65976 1.46861 1.43058 1.56043 1.11232 1.19678 1.17316 0.96991 1.03009 0.91326 1.20646 0.94192 0.99309 0.97267 1.21304 1.01028 0.99943 0.94129 1.17716 0.89699 0.91404 0.91470 1.19439 1.30023 0.99030 1.01038 0.90718 1.25889 0.93523 0.94624 1.00592 1.69785 1.28650 1.10008 1.35081 0.86259 0.79164 0.79545 0.80990 1.19085 1.20441 1.19164 1.20689 0.97764 1.05535 0.98457 1.20078 0.97051 0.99469 0.96930 0.92574 0.92935 0.92374 0.92598 0.92889 0.92588 0.92374 0.92936 0.92589 0.91140 0.91159 0.89230 0.89163 0.77310 0.87504 0.85248 0.91048 0.88583 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.12 37.16 0.30 -0.90 16 2 C -0.07 -0.66 0.80 -154.51 -0.12 -0.78 16 3 C -0.14 -1.23 8.47 37.15 0.31 -0.92 16 4 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 5 C -0.09 -1.10 3.56 -26.73 -0.10 -1.20 16 6 C -0.14 -1.67 5.00 -27.89 -0.14 -1.81 16 7 C 0.49 8.68 7.66 -10.99 -0.08 8.60 16 8 O -0.53 -11.79 13.40 5.55 0.07 -11.71 16 9 N -0.66 -11.58 5.30 -9.74 -0.05 -11.63 16 10 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 11 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 12 C -0.14 -3.94 8.61 -39.26 -0.34 -4.27 16 13 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 14 C -0.46 -12.57 9.02 -37.85 -0.34 -12.91 16 15 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -21.91 10.61 55.55 0.59 -21.32 16 18 Si 0.92 19.37 29.56 -169.99 -5.03 14.35 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 22 C -0.20 -5.02 9.74 -39.26 -0.38 -5.40 16 23 C -0.12 -2.55 9.90 -39.79 -0.39 -2.94 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.09 0.88 6.43 -51.93 -0.33 0.54 16 36 H 0.09 0.91 6.43 -51.93 -0.33 0.58 16 37 H 0.39 5.30 8.82 -40.82 -0.36 4.94 16 38 H 0.11 2.73 6.22 -52.49 -0.33 2.41 16 39 H 0.13 3.70 6.15 -52.48 -0.32 3.37 16 40 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 41 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 42 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -30.80 337.45 -8.40 -39.20 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.54 Total: 8.77 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.54 Total: -22.74 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.54 Total: -32.95 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.80 -8.40 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078041104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.801 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds