Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47257 * 2 1 4 4 C 1.53001 * 109.46921 * 240.00259 * 2 1 3 5 5 C 1.52995 * 109.47191 * 120.00343 * 2 1 3 6 6 C 1.53001 * 109.47512 * 59.99657 * 5 2 1 7 7 C 1.50693 * 109.47459 * 180.02562 * 6 5 2 8 8 O 1.21284 * 119.99937 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00055 * 179.97438 * 7 6 5 10 10 C 1.39234 * 119.99787 * 184.28933 * 9 7 6 11 11 C 1.39480 * 119.83810 * 324.71162 * 10 9 7 12 12 C 1.36373 * 120.17151 * 180.29688 * 11 10 9 13 13 C 1.40869 * 119.82638 * 359.48095 * 12 11 10 14 14 C 1.41149 * 120.16615 * 180.24677 * 13 12 11 15 15 H 1.08002 * 120.00564 * 215.01718 * 14 13 12 16 16 C 1.39907 * 119.99949 * 35.01923 * 14 13 12 17 17 N 1.30873 * 119.99679 * 355.54737 * 16 14 13 18 18 Si 1.86795 * 120.00282 * 175.54331 * 16 14 13 19 19 H 1.48497 * 109.47333 * 59.99949 * 18 16 14 20 20 H 1.48503 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47361 * 299.99743 * 18 16 14 22 22 C 1.40878 * 119.67448 * 0.51928 * 13 12 11 23 23 C 1.36371 * 119.82161 * 359.73123 * 22 13 12 24 24 H 1.08997 * 109.46797 * 299.99762 * 1 2 3 25 25 H 1.08996 * 109.46768 * 59.99859 * 1 2 3 26 26 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47295 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47672 * 300.00306 * 3 2 1 29 29 H 1.09005 * 109.47367 * 59.99822 * 3 2 1 30 30 H 1.08997 * 109.47089 * 299.99727 * 4 2 1 31 31 H 1.08997 * 109.47033 * 60.00065 * 4 2 1 32 32 H 1.08996 * 109.46943 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.46981 * 299.99933 * 5 2 1 34 34 H 1.08996 * 109.47130 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.46772 * 60.00148 * 6 5 2 36 36 H 1.09001 * 109.46975 * 300.00995 * 6 5 2 37 37 H 0.96994 * 119.99721 * 4.29555 * 9 7 6 38 38 H 1.07997 * 119.91386 * 0.02562 * 11 10 9 39 39 H 1.08003 * 120.08733 * 179.70254 * 12 11 10 40 40 H 0.97006 * 120.00240 * 180.02562 * 17 16 14 41 41 H 1.07991 * 120.08734 * 179.71251 * 22 13 12 42 42 H 1.08005 * 119.91371 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2492 7 6 2.0319 -2.8741 2.4799 8 8 2.7285 -2.2844 3.2787 9 7 1.7057 -4.1642 2.6935 10 6 2.0940 -4.7944 3.8728 11 6 3.3189 -4.4760 4.4589 12 6 3.7087 -5.0934 5.6107 13 6 2.8657 -6.0470 6.2144 14 6 3.2597 -6.6866 7.4094 15 1 2.9912 -7.7181 7.5838 16 6 3.9980 -5.9844 8.3681 17 7 4.3981 -4.7632 8.1203 18 14 4.4126 -6.7896 10.0018 19 1 5.2138 -8.0163 9.7598 20 1 5.1957 -5.8428 10.8357 21 1 3.1573 -7.1497 10.7089 22 6 1.6300 -6.3634 5.6164 23 6 1.2562 -5.7413 4.4619 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7209 1.2494 35 1 1.8934 -2.6776 0.3592 36 1 0.4400 -2.1638 1.2491 37 1 1.2006 -4.6537 2.0256 38 1 3.9624 -3.7418 3.9971 39 1 4.6596 -4.8493 6.0608 40 1 4.9104 -4.2763 8.7848 41 1 0.9806 -7.0968 6.0710 42 1 0.3094 -5.9831 4.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078041104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = -60.327440 kcal Electronic energy + Delta-G solvation = -20679.731320 eV Core-core repulsion = 17622.641557 eV Total energy + Delta-G solvation = -3057.089763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25781 -39.34122 -38.39902 -36.14309 -34.67813 -32.35559 -31.38448 -30.61074 -28.10116 -28.07281 -27.11880 -25.18467 -23.21933 -22.59265 -21.01455 -19.44646 -19.22320 -18.44109 -17.70526 -17.04497 -16.62775 -15.79107 -15.63867 -15.41173 -15.15056 -14.91135 -14.57481 -14.21586 -14.18704 -13.89362 -13.59884 -13.37887 -13.28875 -12.84515 -12.72994 -12.66471 -12.61304 -12.50441 -12.31125 -11.97801 -11.76202 -11.71056 -11.45037 -11.38459 -11.37695 -11.17550 -10.71198 -10.42352 -9.45563 -8.73533 -8.49550 -6.32940 0.82574 1.12670 1.38077 1.46601 1.51285 1.85069 2.23267 2.41735 2.82180 3.67790 3.76908 3.84485 3.94595 4.13822 4.32424 4.42945 4.46442 4.48503 4.65402 4.70411 4.83724 4.86999 4.97645 5.00997 5.08290 5.10780 5.13100 5.14990 5.19279 5.21335 5.30301 5.35024 5.42213 5.44684 5.57440 5.59298 5.71224 5.88230 6.09161 6.15378 6.35966 6.70733 6.77321 6.95949 7.02779 7.47779 8.43322 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037252 B = 0.003224 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.450033 B = 8684.099221 C = 9144.249482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.091 4.091 6 C -0.126 4.126 7 C 0.490 3.510 8 O -0.582 6.582 9 N -0.647 5.647 10 C 0.020 3.980 11 C -0.111 4.111 12 C -0.169 4.169 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.080 0.920 16 C 0.021 3.979 17 N -0.848 5.848 18 Si 0.991 3.009 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.210 4.210 23 C -0.109 4.109 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.420 0.580 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.282 0.718 41 H 0.113 0.887 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 5.966 -16.799 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.129 4.129 6 C -0.165 4.165 7 C 0.280 3.720 8 O -0.462 6.462 9 N -0.293 5.293 10 C -0.074 4.074 11 C -0.131 4.131 12 C -0.189 4.189 13 C 0.062 3.938 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.190 4.190 17 N -0.476 5.476 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.183 1.183 22 C -0.230 4.230 23 C -0.128 4.128 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.257 0.743 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.189 6.601 -16.177 18.893 hybrid contribution 0.428 -0.248 0.921 1.045 sum -6.762 6.353 -15.256 17.856 Atomic orbital electron populations 1.21954 0.93620 1.02641 1.01933 1.20551 0.96422 0.95342 0.94371 1.21872 1.00751 0.95405 1.01946 1.21951 1.00781 1.00887 0.96496 1.21355 1.00134 0.93607 0.97845 1.21827 1.03920 0.96256 0.94471 1.21814 0.79943 0.81419 0.88838 1.90702 1.39287 1.67088 1.49106 1.43000 1.56013 1.11537 1.18711 1.17409 0.95500 1.02091 0.92364 1.20667 0.95773 0.99384 0.97276 1.21168 1.00724 1.01636 0.95379 1.18058 0.91120 0.92234 0.92357 1.19745 1.31706 0.99581 1.01859 0.90183 1.26867 0.92834 0.94960 1.04321 1.69916 1.29642 1.11616 1.36462 0.85113 0.79153 0.78624 0.75901 1.18105 1.19838 1.18331 1.20976 0.96969 1.05839 0.99218 1.20459 0.98416 0.98043 0.95927 0.93391 0.91545 0.91349 0.93271 0.91292 0.93355 0.91328 0.91565 0.93289 0.93480 0.93285 0.86053 0.86179 0.74275 0.88699 0.87917 0.90795 0.86902 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.12 71.98 0.58 -1.37 16 2 C -0.07 -1.08 0.80 -52.18 -0.04 -1.12 16 3 C -0.14 -2.33 8.47 71.98 0.61 -1.72 16 4 C -0.14 -1.91 8.12 71.98 0.58 -1.33 16 5 C -0.09 -2.10 3.56 30.59 0.11 -1.99 16 6 C -0.13 -2.61 5.00 29.85 0.15 -2.46 16 7 C 0.49 16.55 7.66 87.65 0.67 17.22 16 8 O -0.58 -26.53 13.40 -3.04 -0.04 -26.57 16 9 N -0.65 -21.23 5.30 -303.11 -1.61 -22.83 16 10 C 0.02 0.88 6.31 38.57 0.24 1.13 16 11 C -0.11 -5.83 8.61 22.13 0.19 -5.64 16 12 C -0.17 -9.73 8.61 22.48 0.19 -9.53 16 13 C 0.06 3.63 5.55 -21.27 -0.12 3.51 16 14 C -0.50 -27.77 9.02 23.39 0.21 -27.56 16 15 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 16 C 0.02 1.14 5.42 85.24 0.46 1.60 16 17 N -0.85 -48.24 10.61 21.82 0.23 -48.00 16 18 Si 0.99 40.39 29.56 68.60 2.03 42.42 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 C -0.21 -10.18 9.74 22.48 0.22 -9.96 16 23 C -0.11 -4.56 9.90 22.13 0.22 -4.34 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 34 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.12 1.84 6.43 -2.38 -0.02 1.83 16 36 H 0.12 1.88 6.43 -2.39 -0.02 1.86 16 37 H 0.42 9.51 8.82 -92.71 -0.82 8.69 16 38 H 0.09 5.13 6.22 -2.91 -0.02 5.11 16 39 H 0.10 6.35 6.15 -2.91 -0.02 6.33 16 40 H 0.28 14.73 8.30 -92.70 -0.77 13.96 16 41 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -71.58 337.45 5.09 -66.49 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.19 Total: 32.06 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 4.29 Total: -43.57 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.38 Total: -70.84 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -71.58 5.09 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078041104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.165 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds