Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47387 * 2 1 4 4 C 1.53008 * 109.46860 * 240.00334 * 2 1 3 5 5 C 1.52998 * 109.47454 * 120.00306 * 2 1 3 6 6 C 1.52998 * 109.46977 * 59.99924 * 5 2 1 7 7 C 1.50698 * 109.47266 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99698 * 354.83556 * 7 6 5 9 9 N 1.34779 * 120.00127 * 174.84078 * 7 6 5 10 10 C 1.37136 * 120.00036 * 5.67157 * 9 7 6 11 11 H 1.07998 * 119.99558 * 55.67414 * 10 9 7 12 12 C 1.38885 * 120.00169 * 235.66853 * 10 9 7 13 13 N 1.31427 * 120.00098 * 9.25475 * 12 10 9 14 14 Si 1.86797 * 120.00347 * 189.24902 * 12 10 9 15 15 H 1.48503 * 109.46894 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47324 * 119.99950 * 14 12 10 17 17 H 1.48496 * 109.47473 * 240.00378 * 14 12 10 18 18 C 1.39794 * 119.99490 * 185.67601 * 9 7 6 19 19 C 1.38961 * 120.07063 * 175.18902 * 18 9 7 20 20 C 1.38081 * 119.91704 * 179.97438 * 19 18 9 21 21 C 1.38303 * 120.08186 * 359.97438 * 20 19 18 22 22 C 1.38313 * 120.15414 * 0.02562 * 21 20 19 23 23 C 1.38080 * 120.07962 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46947 * 300.00032 * 1 2 3 25 25 H 1.09000 * 109.46809 * 59.99475 * 1 2 3 26 26 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47427 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46896 * 300.00677 * 3 2 1 29 29 H 1.08998 * 109.46592 * 60.00152 * 3 2 1 30 30 H 1.08991 * 109.47134 * 299.99736 * 4 2 1 31 31 H 1.09000 * 109.46777 * 60.00226 * 4 2 1 32 32 H 1.09001 * 109.46557 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47096 * 300.00198 * 5 2 1 34 34 H 1.09000 * 109.47046 * 179.97438 * 5 2 1 35 35 H 1.09000 * 109.47496 * 60.00294 * 6 5 2 36 36 H 1.09006 * 109.46959 * 300.00165 * 6 5 2 37 37 H 0.96992 * 120.00413 * 184.98827 * 13 12 10 38 38 H 1.07998 * 120.04322 * 359.69983 * 19 18 9 39 39 H 1.08007 * 119.96193 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.92595 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.95761 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.04146 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2491 7 6 2.0320 -2.8741 2.4798 8 8 2.8041 -2.3155 3.2298 9 7 1.6228 -4.1302 2.7468 10 6 0.8435 -4.8045 1.8420 11 1 1.1839 -4.9312 0.8249 12 6 -0.3833 -5.3245 2.2336 13 7 -0.8812 -5.0185 3.4108 14 14 -1.3260 -6.4586 1.0871 15 1 -0.5553 -6.6452 -0.1685 16 1 -1.5244 -7.7748 1.7457 17 1 -2.6473 -5.8582 0.7729 18 6 1.9928 -4.7456 3.9463 19 6 1.4910 -6.0007 4.2687 20 6 1.8589 -6.6058 5.4540 21 6 2.7262 -5.9645 6.3197 22 6 3.2276 -4.7153 6.0020 23 6 2.8640 -4.1041 4.8184 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.6768 -0.2075 2.1392 34 1 3.1301 -0.7217 1.2489 35 1 1.8934 -2.6776 0.3591 36 1 0.4400 -2.1637 1.2491 37 1 -1.7016 -5.4376 3.7143 38 1 0.8105 -6.5003 3.5951 39 1 1.4690 -7.5811 5.7055 40 1 3.0120 -6.4400 7.2464 41 1 3.9050 -4.2175 6.6801 42 1 3.2555 -3.1285 4.5711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078091335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = -13.786234 kcal Electronic energy + Delta-G solvation = -21903.217258 eV Core-core repulsion = 18848.145673 eV Total energy + Delta-G solvation = -3055.071585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.73944 -37.88268 -36.81440 -34.98175 -31.94234 -30.86829 -29.57615 -28.48957 -27.09915 -27.06062 -25.23445 -23.98434 -21.55897 -20.97038 -19.31687 -18.27799 -17.63381 -16.19560 -15.57620 -15.20243 -14.83463 -14.66130 -14.09375 -14.01280 -13.84974 -13.21635 -13.00430 -12.98532 -12.61332 -12.24853 -12.14061 -11.87902 -11.62437 -11.52305 -11.39220 -11.37279 -11.25665 -11.08407 -10.81305 -10.71392 -10.45430 -10.24953 -10.17175 -10.05601 -9.99714 -9.20869 -8.72786 -8.06359 -7.76684 -6.86132 -6.28960 -4.53165 2.46035 2.59543 3.01613 3.11913 3.14917 3.79272 3.97211 4.52631 4.75633 5.06259 5.06432 5.09683 5.16672 5.70555 5.71054 5.72641 5.86105 5.89574 5.90719 5.95781 5.97546 6.06139 6.09514 6.19367 6.20209 6.23829 6.36951 6.43360 6.48736 6.59135 6.74282 6.76609 6.78242 6.84660 6.98563 7.19084 7.25843 7.54415 7.65355 7.73003 7.82178 8.08810 8.47147 8.86569 9.29622 9.67482 10.48472 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.006689 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.051965 B = 4184.838075 C = 5647.841470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.144 4.144 5 C -0.092 4.092 6 C -0.118 4.118 7 C 0.493 3.507 8 O -0.569 6.569 9 N -0.387 5.387 10 C -0.364 4.364 11 H 0.093 0.907 12 C 0.055 3.945 13 N -0.841 5.841 14 Si 0.912 3.088 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.184 3.816 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.194 4.194 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.273 0.727 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 4.375 -5.297 7.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.201 4.201 5 C -0.130 4.130 6 C -0.158 4.158 7 C 0.286 3.714 8 O -0.454 6.454 9 N -0.094 5.094 10 C -0.492 4.492 11 H 0.110 0.890 12 C -0.154 4.154 13 N -0.473 5.473 14 Si 0.737 3.263 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.203 1.203 18 C 0.087 3.913 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.195 4.195 22 C -0.140 4.140 23 C -0.214 4.214 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.938 4.711 -4.924 7.085 hybrid contribution -0.863 -0.876 -0.297 1.265 sum 1.075 3.835 -5.221 6.566 Atomic orbital electron populations 1.21943 0.94766 1.02421 1.01049 1.20568 0.95666 0.95103 0.95731 1.21848 1.00804 0.95719 1.01213 1.21937 1.00787 1.00790 0.96567 1.21405 1.00761 0.94382 0.96455 1.21474 1.02957 0.94757 0.96603 1.21068 0.81595 0.81151 0.87623 1.90155 1.37878 1.66993 1.50382 1.41051 1.42667 1.10567 1.15104 1.19336 0.98533 1.37587 0.93738 0.88983 1.25613 0.95990 0.97264 0.96555 1.70042 1.20204 1.38165 1.18936 0.86112 0.79646 0.79929 0.80648 1.18798 1.20128 1.20270 1.18323 0.93033 0.92016 0.87894 1.21028 0.99585 0.94979 0.97223 1.20766 0.99132 0.99212 0.95205 1.20773 1.02061 0.96855 0.99771 1.20867 1.00644 0.95399 0.97059 1.22818 1.00271 1.03932 0.94372 0.92821 0.93327 0.91765 0.92854 0.93145 0.92817 0.91939 0.93270 0.92888 0.91831 0.91746 0.89702 0.88723 0.91606 0.85154 0.87872 0.88265 0.87810 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.12 37.16 0.30 -1.58 16 2 C -0.07 -0.93 0.80 -154.50 -0.12 -1.06 16 3 C -0.14 -1.61 8.47 37.16 0.31 -1.29 16 4 C -0.14 -1.76 8.12 37.16 0.30 -1.46 16 5 C -0.09 -1.51 3.57 -26.73 -0.10 -1.60 16 6 C -0.12 -2.23 3.82 -27.88 -0.11 -2.34 16 7 C 0.49 11.58 7.57 -10.99 -0.08 11.49 16 8 O -0.57 -14.04 12.37 5.56 0.07 -13.97 16 9 N -0.39 -9.72 2.62 -58.98 -0.15 -9.88 16 10 C -0.36 -8.88 7.61 -14.94 -0.11 -8.99 16 11 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 12 C 0.06 1.33 3.49 -17.49 -0.06 1.27 16 13 N -0.84 -21.75 11.39 55.49 0.63 -21.12 16 14 Si 0.91 18.47 29.57 -169.99 -5.03 13.44 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 C 0.18 4.71 6.05 -83.69 -0.51 4.20 16 19 C -0.11 -2.62 7.87 -39.37 -0.31 -2.93 16 20 C -0.12 -2.67 10.04 -39.61 -0.40 -3.07 16 21 C -0.18 -3.57 10.04 -39.53 -0.40 -3.96 16 22 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 23 C -0.19 -4.71 9.06 -39.37 -0.36 -5.07 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 35 H 0.08 1.49 6.43 -51.93 -0.33 1.16 16 36 H 0.09 1.84 6.33 -51.93 -0.33 1.51 16 37 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 38 H 0.13 3.27 5.15 -52.49 -0.27 3.00 16 39 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 42 H 0.18 4.36 4.50 -56.37 -0.25 4.10 16 LS Contribution 330.74 15.07 4.98 4.98 Total: -1.00 -27.44 330.74 -7.99 -35.43 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.47 Total: 10.48 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.03 Total: -19.37 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.48 Total: -30.99 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.07 Total: -13.97 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.44 -7.99 -35.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078091335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.646 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds