Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47387 * 2 1 4 4 C 1.53008 * 109.46860 * 240.00334 * 2 1 3 5 5 C 1.52998 * 109.47454 * 120.00306 * 2 1 3 6 6 C 1.52998 * 109.46977 * 59.99924 * 5 2 1 7 7 C 1.50698 * 109.47266 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99698 * 354.83556 * 7 6 5 9 9 N 1.34779 * 120.00127 * 174.84078 * 7 6 5 10 10 C 1.37136 * 120.00036 * 5.67157 * 9 7 6 11 11 H 1.07998 * 119.99558 * 55.67414 * 10 9 7 12 12 C 1.38885 * 120.00169 * 235.66853 * 10 9 7 13 13 N 1.31427 * 120.00098 * 9.25475 * 12 10 9 14 14 Si 1.86797 * 120.00347 * 189.24902 * 12 10 9 15 15 H 1.48503 * 109.46894 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47324 * 119.99950 * 14 12 10 17 17 H 1.48496 * 109.47473 * 240.00378 * 14 12 10 18 18 C 1.39794 * 119.99490 * 185.67601 * 9 7 6 19 19 C 1.38961 * 120.07063 * 175.18902 * 18 9 7 20 20 C 1.38081 * 119.91704 * 179.97438 * 19 18 9 21 21 C 1.38303 * 120.08186 * 359.97438 * 20 19 18 22 22 C 1.38313 * 120.15414 * 0.02562 * 21 20 19 23 23 C 1.38080 * 120.07962 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46947 * 300.00032 * 1 2 3 25 25 H 1.09000 * 109.46809 * 59.99475 * 1 2 3 26 26 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47427 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46896 * 300.00677 * 3 2 1 29 29 H 1.08998 * 109.46592 * 60.00152 * 3 2 1 30 30 H 1.08991 * 109.47134 * 299.99736 * 4 2 1 31 31 H 1.09000 * 109.46777 * 60.00226 * 4 2 1 32 32 H 1.09001 * 109.46557 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47096 * 300.00198 * 5 2 1 34 34 H 1.09000 * 109.47046 * 179.97438 * 5 2 1 35 35 H 1.09000 * 109.47496 * 60.00294 * 6 5 2 36 36 H 1.09006 * 109.46959 * 300.00165 * 6 5 2 37 37 H 0.96992 * 120.00413 * 184.98827 * 13 12 10 38 38 H 1.07998 * 120.04322 * 359.69983 * 19 18 9 39 39 H 1.08007 * 119.96193 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.92595 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.95761 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.04146 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2491 7 6 2.0320 -2.8741 2.4798 8 8 2.8041 -2.3155 3.2298 9 7 1.6228 -4.1302 2.7468 10 6 0.8435 -4.8045 1.8420 11 1 1.1839 -4.9312 0.8249 12 6 -0.3833 -5.3245 2.2336 13 7 -0.8812 -5.0185 3.4108 14 14 -1.3260 -6.4586 1.0871 15 1 -0.5553 -6.6452 -0.1685 16 1 -1.5244 -7.7748 1.7457 17 1 -2.6473 -5.8582 0.7729 18 6 1.9928 -4.7456 3.9463 19 6 1.4910 -6.0007 4.2687 20 6 1.8589 -6.6058 5.4540 21 6 2.7262 -5.9645 6.3197 22 6 3.2276 -4.7153 6.0020 23 6 2.8640 -4.1041 4.8184 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.6768 -0.2075 2.1392 34 1 3.1301 -0.7217 1.2489 35 1 1.8934 -2.6776 0.3591 36 1 0.4400 -2.1637 1.2491 37 1 -1.7016 -5.4376 3.7143 38 1 0.8105 -6.5003 3.5951 39 1 1.4690 -7.5811 5.7055 40 1 3.0120 -6.4400 7.2464 41 1 3.9050 -4.2175 6.6801 42 1 3.2555 -3.1285 4.5711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078091335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = -26.063384 kcal Electronic energy + Delta-G solvation = -21903.749635 eV Core-core repulsion = 18848.145673 eV Total energy + Delta-G solvation = -3055.603962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52062 -39.33607 -38.29747 -36.80933 -33.80924 -32.36379 -31.33036 -30.16459 -28.08902 -28.06987 -27.09308 -25.47749 -23.29667 -22.67933 -21.10615 -19.55011 -19.31316 -17.90404 -17.39760 -16.88896 -16.46243 -16.22590 -15.50368 -15.30592 -15.18530 -14.75918 -14.67621 -14.42086 -14.24658 -13.82769 -13.55315 -13.37419 -13.17499 -13.00214 -12.83964 -12.65728 -12.55589 -12.48646 -12.46940 -12.06381 -11.92654 -11.75071 -11.38075 -11.34353 -11.32677 -11.01943 -10.54987 -9.88430 -9.53788 -8.70484 -8.12351 -6.43769 0.69830 0.81207 1.40212 1.44996 1.57350 2.01380 2.25727 2.83427 2.93836 3.36433 3.88655 3.95329 3.97465 4.21017 4.31481 4.40561 4.41737 4.53815 4.60341 4.72138 4.80471 4.85491 4.90578 4.96023 4.98526 5.01089 5.10596 5.12721 5.16799 5.20444 5.26096 5.32875 5.37827 5.42089 5.45453 5.59892 5.61821 5.80302 5.89539 5.91253 6.06918 6.24911 6.63834 7.00683 7.45591 7.83495 8.65689 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.006689 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.051965 B = 4184.838075 C = 5647.841470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.083 4.083 6 C -0.105 4.105 7 C 0.474 3.526 8 O -0.590 6.590 9 N -0.401 5.401 10 C -0.376 4.376 11 H 0.099 0.901 12 C 0.021 3.979 13 N -0.878 5.878 14 Si 0.978 3.022 15 H -0.253 1.253 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.151 3.849 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.166 4.166 22 C -0.120 4.120 23 C -0.220 4.220 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.274 0.726 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 3.955 -5.898 7.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.199 4.199 5 C -0.121 4.121 6 C -0.145 4.145 7 C 0.268 3.732 8 O -0.476 6.476 9 N -0.108 5.108 10 C -0.503 4.503 11 H 0.116 0.884 12 C -0.185 4.185 13 N -0.511 5.511 14 Si 0.800 3.200 15 H -0.176 1.176 16 H -0.201 1.201 17 H -0.201 1.201 18 C 0.054 3.946 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.185 4.185 22 C -0.138 4.138 23 C -0.240 4.240 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.945 4.294 -5.533 7.269 hybrid contribution -0.801 -0.757 -0.008 1.102 sum 1.145 3.537 -5.542 6.673 Atomic orbital electron populations 1.21934 0.94562 1.01735 1.01862 1.20550 0.95792 0.95955 0.94390 1.21822 1.00998 0.94405 1.02076 1.21924 1.00981 1.00316 0.96717 1.21351 1.00176 0.92934 0.97686 1.21444 1.02232 0.95885 0.94893 1.21895 0.81376 0.81070 0.88812 1.90132 1.38745 1.67351 1.51369 1.41333 1.42965 1.11197 1.15348 1.19625 0.98864 1.37820 0.93997 0.88392 1.26355 0.96368 0.98122 0.97640 1.70157 1.20694 1.39384 1.20851 0.85117 0.78155 0.77727 0.79023 1.17600 1.20070 1.20113 1.18717 0.94193 0.93002 0.88675 1.21065 1.00273 0.95036 0.98533 1.21159 0.98762 1.00304 0.94167 1.21207 1.00435 0.96134 1.00728 1.21244 1.00467 0.95892 0.96237 1.22852 1.01234 1.03995 0.95932 0.93446 0.91078 0.93192 0.92592 0.91115 0.93132 0.92880 0.91188 0.92636 0.93630 0.92455 0.88444 0.89487 0.91668 0.86554 0.84974 0.84031 0.84735 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.12 71.98 0.58 -3.02 16 2 C -0.07 -1.70 0.80 -52.18 -0.04 -1.74 16 3 C -0.14 -2.92 8.47 71.98 0.61 -2.31 16 4 C -0.14 -3.25 8.12 71.98 0.58 -2.66 16 5 C -0.08 -2.78 3.57 30.59 0.11 -2.67 16 6 C -0.11 -4.09 3.82 29.85 0.11 -3.98 16 7 C 0.47 23.25 7.57 87.66 0.66 23.91 16 8 O -0.59 -30.48 12.37 -3.03 -0.04 -30.52 16 9 N -0.40 -20.89 2.62 -458.90 -1.20 -22.09 16 10 C -0.38 -18.74 7.61 84.02 0.64 -18.10 16 11 H 0.10 4.61 7.85 -2.91 -0.02 4.58 16 12 C 0.02 1.03 3.49 84.91 0.30 1.33 16 13 N -0.88 -46.38 11.39 21.65 0.25 -46.13 16 14 Si 0.98 37.87 29.57 68.60 2.03 39.90 16 15 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 16 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 18 C 0.15 7.92 6.05 38.22 0.23 8.15 16 19 C -0.13 -6.32 7.87 22.41 0.18 -6.14 16 20 C -0.13 -5.21 10.04 22.25 0.22 -4.98 16 21 C -0.17 -6.32 10.04 22.30 0.22 -6.10 16 22 C -0.12 -4.96 10.04 22.25 0.22 -4.73 16 23 C -0.22 -10.92 9.06 22.41 0.20 -10.72 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.38 6.43 -2.39 -0.02 1.37 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.30 6.43 -2.39 -0.02 1.29 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 35 H 0.10 3.49 6.43 -2.39 -0.02 3.48 16 36 H 0.09 3.51 6.33 -2.38 -0.02 3.50 16 37 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 38 H 0.12 5.97 5.15 -2.91 -0.02 5.95 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.16 8.35 4.50 -64.43 -0.29 8.06 16 Total: -1.00 -60.76 330.74 6.59 -54.17 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.72 Total: 38.43 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 4.84 Total: -33.76 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -0.96 Total: -68.22 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.52 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -60.76 6.59 -54.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078091335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.104 kcal (2) G-P(sol) polarization free energy of solvation -60.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds