Wall clock time and date at job start Mon Mar 30 2020 02:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.53008 * 109.46928 * 119.99613 * 2 1 3 5 5 C 1.52998 * 109.47077 * 65.00019 * 4 2 1 6 6 N 1.46500 * 109.47091 * 179.97438 * 5 4 2 7 7 C 1.46494 * 120.00149 * 270.00188 * 6 5 4 8 8 C 1.34772 * 119.99567 * 90.00203 * 6 5 4 9 9 O 1.21549 * 120.00536 * 354.39268 * 8 6 5 10 10 C 1.47894 * 119.99724 * 174.39396 * 8 6 5 11 11 C 1.39914 * 120.02692 * 147.12131 * 10 8 6 12 12 C 1.38331 * 120.36307 * 180.02562 * 11 10 8 13 13 C 1.37748 * 120.40683 * 359.97438 * 12 11 10 14 14 C 1.40754 * 120.04109 * 0.02562 * 13 12 11 15 15 C 1.41437 * 120.17794 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00299 * 150.21626 * 15 14 13 17 17 C 1.39939 * 120.00045 * 330.21653 * 15 14 13 18 18 N 1.30828 * 120.00153 * 344.52901 * 17 15 14 19 19 Si 1.86796 * 120.00118 * 164.51862 * 17 15 14 20 20 H 1.48502 * 109.46771 * 90.00397 * 19 17 15 21 21 H 1.48498 * 109.47480 * 210.00115 * 19 17 15 22 22 H 1.48497 * 109.47176 * 330.00560 * 19 17 15 23 23 C 1.38995 * 120.02099 * 327.13717 * 10 8 6 24 24 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47562 * 300.00607 * 1 2 3 26 26 H 1.09006 * 109.46653 * 60.00710 * 1 2 3 27 27 H 1.09000 * 109.47989 * 239.99718 * 2 1 3 28 28 H 1.09000 * 109.46955 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47052 * 299.99580 * 3 2 1 30 30 H 1.09001 * 109.47188 * 59.99794 * 3 2 1 31 31 H 1.08999 * 109.47022 * 305.00458 * 4 2 1 32 32 H 1.08999 * 109.46915 * 185.00381 * 4 2 1 33 33 H 1.08999 * 109.46836 * 60.00325 * 5 4 2 34 34 H 1.08996 * 109.46973 * 300.00447 * 5 4 2 35 35 H 1.08997 * 109.47461 * 269.32001 * 7 6 5 36 36 H 1.09003 * 109.47222 * 29.32299 * 7 6 5 37 37 H 1.08997 * 109.47380 * 149.32020 * 7 6 5 38 38 H 1.08001 * 119.81865 * 359.97438 * 11 10 8 39 39 H 1.07992 * 119.79939 * 180.02562 * 12 11 10 40 40 H 1.08005 * 119.98155 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00151 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.20822 * 359.70835 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1882 6 7 2.1240 -2.8861 2.3841 7 6 3.4522 -3.5040 2.3816 8 6 1.3516 -2.9529 3.4866 9 8 0.2942 -2.3548 3.5251 10 6 1.7908 -3.7540 4.6496 11 6 1.4580 -3.3467 5.9461 12 6 1.8656 -4.0905 7.0389 13 6 2.6032 -5.2405 6.8636 14 6 2.9475 -5.6660 5.5669 15 6 3.7043 -6.8467 5.3836 16 1 3.5782 -7.4353 4.4868 17 6 4.6166 -7.2525 6.3641 18 7 4.9966 -6.4120 7.2919 19 14 5.2915 -8.9942 6.3485 20 1 6.5306 -9.0375 5.5311 21 1 5.6000 -9.4180 7.7379 22 1 4.2806 -9.9116 5.7640 23 6 2.5348 -4.9119 4.4554 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6052 -0.2617 2.1370 32 1 3.1262 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3005 34 1 0.5489 -2.2723 1.1421 35 1 3.3705 -4.5399 2.0524 36 1 4.1061 -2.9573 1.7022 37 1 3.8685 -3.4747 3.3886 38 1 0.8804 -2.4463 6.0945 39 1 1.6032 -3.7679 8.0356 40 1 2.9182 -5.8158 7.7218 41 1 5.6286 -6.6934 7.9718 42 1 2.7902 -5.2325 3.4562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078840081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:38 Heat of formation + Delta-G solvation = -46.760025 kcal Electronic energy + Delta-G solvation = -21073.307553 eV Core-core repulsion = 18016.806118 eV Total energy + Delta-G solvation = -3056.501435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20148 -38.98711 -37.81013 -36.16405 -35.46948 -32.15664 -31.77610 -30.02076 -28.02611 -27.74536 -27.12069 -25.21160 -23.14672 -22.58332 -20.93674 -20.66912 -18.97333 -17.67411 -17.45080 -16.87382 -16.61475 -16.45237 -15.96772 -15.37509 -14.98639 -14.73694 -14.61578 -14.43971 -14.23116 -13.82091 -13.64184 -13.48903 -13.24165 -13.12804 -12.82364 -12.78278 -12.62380 -12.50184 -12.24459 -12.19245 -11.98437 -11.80505 -11.56179 -11.45489 -11.34840 -11.04370 -10.72563 -9.67313 -9.43204 -9.34748 -8.62007 -6.36151 0.45856 0.93972 1.43053 1.49051 1.56832 1.94152 2.12732 2.24839 2.77127 3.65559 3.70392 3.90409 3.96648 4.04858 4.26256 4.32044 4.40098 4.48697 4.53683 4.60445 4.72277 4.78347 4.81913 4.91981 4.92885 5.00285 5.02145 5.02729 5.09870 5.12645 5.16387 5.31009 5.32154 5.43365 5.47562 5.52743 5.67442 5.81647 5.97286 6.03383 6.20915 6.37056 6.61179 6.91934 6.93896 7.18757 8.37202 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.003858 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.250758 B = 7255.176297 C = 7776.045286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.124 4.124 5 C 0.112 3.888 6 N -0.609 5.609 7 C 0.077 3.923 8 C 0.561 3.439 9 O -0.583 6.583 10 C -0.123 4.123 11 C -0.190 4.190 12 C -0.114 4.114 13 C -0.158 4.158 14 C 0.078 3.922 15 C -0.496 4.496 16 H 0.082 0.918 17 C 0.039 3.961 18 N -0.830 5.830 19 Si 0.979 3.021 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.186 4.186 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.288 0.712 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 6.546 -12.354 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.340 5.340 7 C -0.064 4.064 8 C 0.352 3.648 9 O -0.465 6.465 10 C -0.126 4.126 11 C -0.210 4.210 12 C -0.132 4.132 13 C -0.178 4.178 14 C 0.076 3.924 15 C -0.526 4.526 16 H 0.100 0.900 17 C -0.176 4.176 18 N -0.456 5.456 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.184 1.184 23 C -0.206 4.206 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.037 6.885 -12.169 13.982 hybrid contribution 0.240 -0.617 0.708 0.969 sum 0.203 6.268 -11.462 13.065 Atomic orbital electron populations 1.21892 0.95573 1.01634 1.01550 1.21051 0.95645 0.96650 0.97374 1.21818 1.01228 0.95350 1.01815 1.21955 1.01197 0.94727 0.98352 1.21733 1.00196 0.92489 0.86525 1.47828 1.17857 1.55310 1.13023 1.22199 0.82319 0.98320 1.03608 1.18786 0.83294 0.79521 0.83236 1.90636 1.25329 1.47729 1.82812 1.19600 1.02446 0.97642 0.92922 1.20603 1.06602 1.02114 0.91660 1.20870 0.98880 0.95663 0.97791 1.21431 1.00477 0.97987 0.97864 1.17883 0.90541 0.92578 0.91436 1.19746 1.19937 1.07509 1.05406 0.89995 1.26663 0.95178 1.02393 0.93349 1.69844 1.25895 1.36846 1.13008 0.85240 0.78999 0.77154 0.78570 1.18553 1.19614 1.18392 1.21753 1.04098 0.95658 0.99058 0.93067 0.94280 0.91244 0.89263 0.92147 0.91369 0.93843 0.94515 0.91072 0.87584 0.91451 0.91456 0.88458 0.91845 0.87999 0.86438 0.87877 0.90161 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.95 71.98 0.64 -2.29 16 2 C -0.09 -1.60 2.92 -10.79 -0.03 -1.63 16 3 C -0.14 -2.36 9.19 71.98 0.66 -1.69 16 4 C -0.12 -2.94 5.01 30.60 0.15 -2.78 16 5 C 0.11 2.91 5.12 86.38 0.44 3.35 16 6 N -0.61 -20.02 2.87 -850.17 -2.44 -22.46 16 7 C 0.08 2.20 8.82 127.77 1.13 3.33 16 8 C 0.56 23.74 7.38 86.80 0.64 24.38 16 9 O -0.58 -27.49 16.41 -3.87 -0.06 -27.56 16 10 C -0.12 -5.67 5.23 -20.13 -0.11 -5.78 16 11 C -0.19 -8.92 9.61 22.70 0.22 -8.71 16 12 C -0.11 -5.34 10.01 22.18 0.22 -5.12 16 13 C -0.16 -8.09 8.65 22.77 0.20 -7.89 16 14 C 0.08 3.99 5.51 -21.32 -0.12 3.87 16 15 C -0.50 -25.05 9.04 23.47 0.21 -24.84 16 16 H 0.08 3.93 7.89 -2.91 -0.02 3.91 16 17 C 0.04 1.86 5.14 85.25 0.44 2.30 16 18 N -0.83 -41.57 11.18 21.83 0.24 -41.33 16 19 Si 0.98 36.31 29.59 68.60 2.03 38.34 16 20 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 23 C -0.19 -8.61 7.41 23.01 0.17 -8.44 16 24 H 0.05 1.07 6.57 -2.39 -0.02 1.05 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.07 1.98 5.93 -2.39 -0.01 1.97 16 35 H 0.07 1.83 6.65 -2.39 -0.02 1.81 16 36 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.06 2.18 6.08 -2.39 -0.01 2.16 16 38 H 0.10 4.62 7.96 -2.91 -0.02 4.60 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 5.46 6.46 -2.91 -0.02 5.44 16 41 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 42 H 0.13 5.26 5.12 -2.91 -0.01 5.24 16 Total: -1.00 -61.24 339.64 5.63 -55.60 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.99 Total: 29.34 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 4.87 Total: -31.94 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -2.20 Total: -63.79 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.06 Total: -27.56 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -61.24 5.63 -55.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078840081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.841 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds