Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 C 1.53003 * 109.47222 * 239.99616 * 2 1 3 5 5 C 1.50696 * 109.47075 * 59.99923 * 4 2 1 6 6 H 1.08001 * 119.99729 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99564 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46799 * 120.00344 * 9 7 5 12 12 H 1.48493 * 109.47350 * 240.00383 * 9 7 5 13 13 C 1.53001 * 109.47148 * 119.99882 * 2 1 3 14 14 N 1.46503 * 109.47157 * 300.00143 * 13 2 1 15 15 C 1.39669 * 120.00278 * 179.97438 * 14 13 2 16 16 C 1.38935 * 120.06028 * 0.02562 * 15 14 13 17 17 C 1.38147 * 119.97140 * 180.02562 * 16 15 14 18 18 C 1.38052 * 120.01441 * 359.97170 * 17 16 15 19 19 C 1.38659 * 120.15822 * 0.02562 * 18 17 16 20 20 C 1.37845 * 120.11518 * 0.02562 * 19 18 17 21 21 C 1.51098 * 107.26793 * 179.97438 * 19 18 17 22 22 O 1.43936 * 105.95175 * 17.69625 * 21 19 18 23 23 C 1.43931 * 104.96431 * 331.52699 * 22 21 19 24 24 H 1.09005 * 109.47485 * 299.99929 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00231 * 1 2 3 26 26 H 1.09003 * 109.47502 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46780 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46790 * 299.99910 * 3 2 1 29 29 H 1.08991 * 109.47395 * 59.99782 * 3 2 1 30 30 H 1.08997 * 109.47085 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46995 * 300.00450 * 4 2 1 32 32 H 0.97006 * 119.99943 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47319 * 180.02562 * 13 2 1 34 34 H 1.09003 * 109.47022 * 59.99579 * 13 2 1 35 35 H 0.97001 * 120.00072 * 0.02562 * 14 13 2 36 36 H 1.07999 * 120.01673 * 359.97438 * 16 15 14 37 37 H 1.07995 * 119.99962 * 179.97438 * 17 16 15 38 38 H 1.08002 * 120.07067 * 179.72650 * 20 19 18 39 39 H 1.08999 * 110.16012 * 136.82248 * 21 19 18 40 40 H 1.09001 * 110.15359 * 258.58186 * 21 19 18 41 41 H 1.08996 * 110.15760 * 147.60329 * 23 22 21 42 42 H 1.08999 * 110.15347 * 269.28878 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6273 -1.5511 -3.8525 9 14 1.2479 0.3982 -5.2572 10 1 0.4225 1.5647 -4.8531 11 1 2.4026 0.8657 -6.0654 12 1 0.4236 -0.5357 -6.0655 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8886 -0.5080 3.7140 16 6 2.6873 -1.6375 3.8430 17 6 3.0190 -2.1085 5.0987 18 6 2.5575 -1.4567 6.2248 19 6 1.7603 -0.3292 6.0995 20 6 1.4248 0.1452 4.8495 21 6 1.4261 0.1413 7.4960 22 8 2.3853 -0.4878 8.3654 23 6 2.7388 -1.7155 7.7025 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 2.8617 -1.8826 -4.7335 33 1 3.1300 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9936 0.7578 2.3564 36 1 3.0480 -2.1476 2.9621 37 1 3.6394 -2.9866 5.1995 38 1 0.8001 1.0210 4.7528 39 1 1.5167 1.2257 7.5588 40 1 0.4160 -0.1681 7.7648 41 1 3.7769 -1.9713 7.9144 42 1 2.0800 -2.5208 8.0273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092854820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -28.568371 kcal Electronic energy + Delta-G solvation = -20795.678939 eV Core-core repulsion = 17739.966353 eV Total energy + Delta-G solvation = -3055.712586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61338 -38.51235 -36.95031 -34.10605 -32.32234 -31.50498 -29.80788 -27.96150 -27.05115 -26.54869 -25.62899 -24.33820 -22.90344 -21.71431 -20.62497 -18.32317 -16.98733 -16.69061 -16.36130 -16.28004 -15.76951 -14.75634 -14.50234 -14.42041 -14.35284 -13.72325 -13.32975 -13.13452 -13.04504 -12.84243 -12.66113 -12.49840 -12.11866 -12.05940 -11.53031 -11.27357 -11.07263 -10.88689 -10.87046 -10.69922 -10.42208 -10.32644 -10.27377 -9.92466 -9.53115 -9.26140 -8.97501 -8.78269 -8.41353 -7.21481 -6.05521 -4.06570 1.36212 1.54520 3.26599 3.34949 3.37290 3.58296 3.78909 3.83952 4.34453 4.41370 4.64779 4.94568 5.21271 5.21775 5.30414 5.30758 5.33368 5.39563 5.46551 5.53944 5.65334 5.69585 5.78063 5.97278 6.09668 6.12253 6.20747 6.29428 6.30701 6.32888 6.40918 6.58943 6.59675 6.69513 6.83243 6.99422 7.02260 7.05964 7.49022 7.56816 7.69055 7.89850 7.93205 8.35532 8.98276 9.57015 11.06028 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.049153 B = 0.003066 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.515873 B = 9130.983096 C = 9486.316741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.131 3.869 14 N -0.734 5.734 15 C 0.234 3.766 16 C -0.197 4.197 17 C -0.041 4.041 18 C -0.209 4.209 19 C -0.085 4.085 20 C -0.178 4.178 21 C 0.092 3.908 22 O -0.367 6.367 23 C 0.102 3.898 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.399 0.601 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 1.319 18.872 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.007 3.993 14 N -0.361 5.361 15 C 0.127 3.873 16 C -0.220 4.220 17 C -0.060 4.060 18 C -0.211 4.211 19 C -0.086 4.086 20 C -0.201 4.201 21 C 0.016 3.984 22 O -0.286 6.286 23 C 0.025 3.975 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.235 0.765 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.573 1.186 18.750 18.854 hybrid contribution -0.559 0.559 -1.315 1.534 sum -2.132 1.745 17.435 17.651 Atomic orbital electron populations 1.21745 0.95261 1.01092 1.00240 1.20868 0.95497 0.95880 0.94897 1.21745 1.00455 0.95911 1.00243 1.19094 0.96261 0.95171 0.89593 1.21218 1.31122 1.12071 0.90511 0.92222 1.25009 0.95281 0.95081 0.99120 1.69968 1.37022 1.23071 1.23382 0.86589 0.78642 0.79698 0.83397 1.19794 1.21094 1.21091 1.21641 0.98218 0.95811 0.83618 1.45069 1.56228 1.32587 1.02247 1.17803 0.92007 0.92019 0.85438 1.20667 1.04706 0.98885 0.97734 1.20073 0.97241 0.98236 0.90428 1.20632 1.05469 0.99688 0.95355 1.20619 0.97189 0.96281 0.94548 1.19685 1.07471 1.03234 0.89748 1.21707 0.92877 0.98594 0.85250 1.89034 1.61215 1.34879 1.43425 1.21562 1.01085 0.87186 0.87641 0.95210 0.91506 0.93439 0.93427 0.91512 0.95196 0.96415 0.96421 0.93072 0.92462 0.92464 0.76494 0.85360 0.86126 0.86242 0.88803 0.90749 0.89301 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.35 7.65 -34.44 -0.26 -13.61 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.09 3.80 -4.04 -0.02 2.08 16 14 N -0.73 -10.24 5.13 -58.61 -0.30 -10.54 16 15 C 0.23 3.21 6.65 -83.76 -0.56 2.65 16 16 C -0.20 -2.65 9.31 -39.36 -0.37 -3.01 16 17 C -0.04 -0.49 10.03 -39.68 -0.40 -0.89 16 18 C -0.21 -2.54 6.32 -104.33 -0.66 -3.20 16 19 C -0.09 -1.04 6.32 -104.42 -0.66 -1.70 16 20 C -0.18 -2.24 9.89 -39.45 -0.39 -2.63 16 21 C 0.09 0.95 7.63 36.20 0.28 1.23 16 22 O -0.37 -4.38 11.72 -35.23 -0.41 -4.79 16 23 C 0.10 1.06 7.63 36.21 0.28 1.33 16 24 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 34 H 0.06 0.94 7.95 -51.93 -0.41 0.52 16 35 H 0.40 5.19 6.18 -40.82 -0.25 4.94 16 36 H 0.13 1.70 6.73 -52.49 -0.35 1.34 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -28.84 333.38 -8.92 -37.76 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.49 Total: 2.55 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -2.45 Total: -20.74 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.44 Total: -35.76 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.41 Total: -4.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.84 -8.92 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092854820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.196 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds