Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 C 1.53003 * 109.47222 * 239.99616 * 2 1 3 5 5 C 1.50696 * 109.47075 * 59.99923 * 4 2 1 6 6 H 1.08001 * 119.99729 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99564 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46799 * 120.00344 * 9 7 5 12 12 H 1.48493 * 109.47350 * 240.00383 * 9 7 5 13 13 C 1.53001 * 109.47148 * 119.99882 * 2 1 3 14 14 N 1.46503 * 109.47157 * 300.00143 * 13 2 1 15 15 C 1.39669 * 120.00278 * 179.97438 * 14 13 2 16 16 C 1.38935 * 120.06028 * 0.02562 * 15 14 13 17 17 C 1.38147 * 119.97140 * 180.02562 * 16 15 14 18 18 C 1.38052 * 120.01441 * 359.97170 * 17 16 15 19 19 C 1.38659 * 120.15822 * 0.02562 * 18 17 16 20 20 C 1.37845 * 120.11518 * 0.02562 * 19 18 17 21 21 C 1.51098 * 107.26793 * 179.97438 * 19 18 17 22 22 O 1.43936 * 105.95175 * 17.69625 * 21 19 18 23 23 C 1.43931 * 104.96431 * 331.52699 * 22 21 19 24 24 H 1.09005 * 109.47485 * 299.99929 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00231 * 1 2 3 26 26 H 1.09003 * 109.47502 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46780 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46790 * 299.99910 * 3 2 1 29 29 H 1.08991 * 109.47395 * 59.99782 * 3 2 1 30 30 H 1.08997 * 109.47085 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46995 * 300.00450 * 4 2 1 32 32 H 0.97006 * 119.99943 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47319 * 180.02562 * 13 2 1 34 34 H 1.09003 * 109.47022 * 59.99579 * 13 2 1 35 35 H 0.97001 * 120.00072 * 0.02562 * 14 13 2 36 36 H 1.07999 * 120.01673 * 359.97438 * 16 15 14 37 37 H 1.07995 * 119.99962 * 179.97438 * 17 16 15 38 38 H 1.08002 * 120.07067 * 179.72650 * 20 19 18 39 39 H 1.08999 * 110.16012 * 136.82248 * 21 19 18 40 40 H 1.09001 * 110.15359 * 258.58186 * 21 19 18 41 41 H 1.08996 * 110.15760 * 147.60329 * 23 22 21 42 42 H 1.08999 * 110.15347 * 269.28878 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6273 -1.5511 -3.8525 9 14 1.2479 0.3982 -5.2572 10 1 0.4225 1.5647 -4.8531 11 1 2.4026 0.8657 -6.0654 12 1 0.4236 -0.5357 -6.0655 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8886 -0.5080 3.7140 16 6 2.6873 -1.6375 3.8430 17 6 3.0190 -2.1085 5.0987 18 6 2.5575 -1.4567 6.2248 19 6 1.7603 -0.3292 6.0995 20 6 1.4248 0.1452 4.8495 21 6 1.4261 0.1413 7.4960 22 8 2.3853 -0.4878 8.3654 23 6 2.7388 -1.7155 7.7025 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 2.8617 -1.8826 -4.7335 33 1 3.1300 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9936 0.7578 2.3564 36 1 3.0480 -2.1476 2.9621 37 1 3.6394 -2.9866 5.1995 38 1 0.8001 1.0210 4.7528 39 1 1.5167 1.2257 7.5588 40 1 0.4160 -0.1681 7.7648 41 1 3.7769 -1.9713 7.9144 42 1 2.0800 -2.5208 8.0273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092854820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = -44.420344 kcal Electronic energy + Delta-G solvation = -20796.366332 eV Core-core repulsion = 17739.966353 eV Total energy + Delta-G solvation = -3056.399979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51291 -39.70521 -38.16671 -35.44970 -34.15844 -32.42394 -30.89235 -29.12034 -28.67296 -27.98398 -26.94033 -25.28510 -24.68420 -22.60654 -21.68448 -19.78296 -18.38109 -18.08248 -17.55945 -17.15756 -16.76211 -16.51062 -15.80145 -15.70622 -15.27507 -14.99416 -14.56451 -14.42657 -14.31098 -14.05579 -13.95133 -13.69568 -13.44892 -13.19642 -12.89305 -12.72462 -12.63212 -12.42515 -12.35836 -12.23213 -11.95372 -11.77780 -11.58045 -11.19939 -10.99304 -10.84655 -10.52935 -10.50286 -9.70936 -8.25873 -8.15806 -6.22659 0.40784 0.58005 1.39751 1.41576 1.52561 2.39781 2.50187 2.82565 3.04824 3.19045 3.45345 3.79005 3.97944 4.06715 4.09485 4.20993 4.38165 4.40584 4.50447 4.55215 4.66485 4.68034 4.72414 4.74091 4.82008 4.87014 4.95660 5.08558 5.10205 5.12374 5.33691 5.41295 5.43731 5.45031 5.48137 5.50935 5.54601 5.78814 5.79583 5.88748 5.90567 6.28488 6.40749 6.86072 6.92753 7.45001 8.96690 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.049153 B = 0.003066 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.515873 B = 9130.983096 C = 9486.316741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.120 4.120 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.068 0.932 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.147 3.853 14 N -0.731 5.731 15 C 0.217 3.783 16 C -0.214 4.214 17 C -0.046 4.046 18 C -0.215 4.215 19 C -0.095 4.095 20 C -0.179 4.179 21 C 0.091 3.909 22 O -0.383 6.383 23 C 0.100 3.900 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.063 0.937 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.405 0.595 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 2.622 20.554 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.780 3.220 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.023 3.977 14 N -0.360 5.360 15 C 0.112 3.888 16 C -0.237 4.237 17 C -0.065 4.065 18 C -0.218 4.218 19 C -0.096 4.096 20 C -0.202 4.202 21 C 0.016 3.984 22 O -0.302 6.302 23 C 0.024 3.976 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.242 0.758 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.644 2.504 20.463 20.785 hybrid contribution -0.200 0.110 -1.731 1.746 sum -2.844 2.614 18.732 19.127 Atomic orbital electron populations 1.21663 0.94088 1.00848 1.01104 1.20678 0.96332 0.96118 0.93394 1.21664 0.99876 0.95085 1.01101 1.18958 0.94358 0.94214 0.92062 1.21624 1.30314 1.11992 0.91301 0.91391 1.25889 0.95689 0.95873 1.02533 1.70105 1.38753 1.24864 1.24032 0.85544 0.78093 0.78826 0.79488 1.18386 1.20990 1.20960 1.21236 0.97560 0.95283 0.83667 1.44771 1.56806 1.32804 1.01612 1.17942 0.92777 0.92544 0.85510 1.20791 1.05351 0.99329 0.98239 1.20297 0.97295 0.98887 0.89974 1.20975 1.04934 0.99570 0.96315 1.20953 0.96972 0.96340 0.95354 1.19865 1.07314 1.03586 0.89400 1.21863 0.93361 0.99432 0.83793 1.89018 1.61745 1.35512 1.43968 1.21703 1.02370 0.87185 0.86315 0.91815 0.93049 0.94274 0.94326 0.93044 0.91823 0.99285 0.99245 0.93139 0.93364 0.93273 0.75765 0.86053 0.84172 0.84423 0.87327 0.89055 0.87985 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.26 7.65 25.60 0.20 -27.06 16 6 H 0.07 3.43 5.68 -2.91 -0.02 3.41 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -55.88 13.29 21.45 0.28 -55.59 16 9 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.15 4.72 3.80 86.38 0.33 5.05 16 14 N -0.73 -19.33 5.13 -339.34 -1.74 -21.08 16 15 C 0.22 5.69 6.65 38.23 0.25 5.94 16 16 C -0.21 -5.64 9.31 22.42 0.21 -5.44 16 17 C -0.05 -1.05 10.03 22.20 0.22 -0.83 16 18 C -0.22 -4.81 6.32 -19.68 -0.12 -4.94 16 19 C -0.10 -2.11 6.32 -19.73 -0.12 -2.23 16 20 C -0.18 -4.10 9.89 22.35 0.22 -3.88 16 21 C 0.09 1.64 7.63 71.36 0.54 2.19 16 22 O -0.38 -8.20 11.72 -148.98 -1.75 -9.95 16 23 C 0.10 1.84 7.63 71.37 0.54 2.39 16 24 H 0.06 1.71 6.86 -2.38 -0.02 1.69 16 25 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.89 6.62 -2.38 -0.02 1.87 16 29 H 0.06 1.72 6.86 -2.39 -0.02 1.70 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 33 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 34 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16 35 H 0.41 9.50 6.18 -92.71 -0.57 8.93 16 36 H 0.12 3.28 6.73 -2.91 -0.02 3.26 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -62.60 333.38 3.24 -59.36 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.44 Total: 17.61 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.98 Total: -35.68 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.46 Total: -76.67 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.75 Total: -9.95 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.60 3.24 -59.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092854820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.940 kcal (2) G-P(sol) polarization free energy of solvation -62.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds