Wall clock time and date at job start Mon Mar 30 2020 01:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 110.05809 * 2 1 4 4 C 1.54263 * 110.03198 * 238.58151 * 2 1 3 5 5 C 1.54890 * 104.19670 * 264.32394 * 4 2 1 6 6 C 1.55011 * 102.75439 * 322.04576 * 5 4 2 7 7 C 1.53877 * 110.03175 * 121.41289 * 2 1 3 8 8 H 1.09000 * 110.03359 * 238.61615 * 7 2 1 9 9 N 1.46492 * 110.03060 * 0.02562 * 7 2 1 10 10 C 1.39787 * 119.99538 * 204.30455 * 9 7 2 11 11 C 1.38953 * 120.00380 * 180.02562 * 10 9 7 12 12 C 1.38006 * 119.99281 * 180.02562 * 11 10 9 13 13 C 1.38896 * 120.00830 * 359.97438 * 12 11 10 14 14 O 1.35796 * 119.99587 * 179.97438 * 13 12 11 15 15 C 1.34818 * 117.00035 * 354.46942 * 14 13 12 16 16 H 1.08003 * 119.99619 * 5.06396 * 15 14 13 17 17 C 1.38615 * 119.99844 * 185.06164 * 15 14 13 18 18 N 1.31578 * 120.00292 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99781 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47328 * 60.00148 * 19 17 15 21 21 H 1.48498 * 109.47269 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47001 * 300.00043 * 19 17 15 23 23 C 1.38902 * 120.01085 * 0.02562 * 13 12 11 24 24 C 1.38007 * 120.00582 * 359.97438 * 23 13 12 25 25 H 1.09001 * 109.47212 * 298.58526 * 1 2 3 26 26 H 1.09004 * 109.46963 * 58.58354 * 1 2 3 27 27 H 1.08995 * 109.47251 * 178.58498 * 1 2 3 28 28 H 1.08995 * 109.47263 * 181.41976 * 3 2 1 29 29 H 1.09003 * 109.46491 * 301.41705 * 3 2 1 30 30 H 1.09000 * 109.46986 * 61.41346 * 3 2 1 31 31 H 1.08996 * 110.49076 * 23.00598 * 4 2 1 32 32 H 1.09009 * 110.48612 * 145.64541 * 4 2 1 33 33 H 1.08999 * 110.74994 * 80.37435 * 5 4 2 34 34 H 1.08996 * 110.75523 * 203.55857 * 5 4 2 35 35 H 1.08999 * 110.50564 * 279.29299 * 6 5 4 36 36 H 1.09000 * 110.52486 * 156.61143 * 6 5 4 37 37 H 0.96995 * 120.00605 * 24.31286 * 9 7 2 38 38 H 1.08005 * 120.00215 * 0.03920 * 11 10 9 39 39 H 1.08009 * 119.99638 * 179.72579 * 12 11 10 40 40 H 0.97003 * 119.99814 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99509 * 179.97438 * 23 13 12 42 42 H 1.07996 * 120.00234 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 2.3280 -2.1902 -0.7190 6 6 2.8882 -1.9406 0.7046 7 6 2.0570 -0.7535 1.2338 8 1 2.6860 -0.0950 1.8329 9 7 0.9359 -1.2454 2.0381 10 6 1.1109 -1.4949 3.4024 11 6 0.0477 -1.9620 4.1654 12 6 0.2207 -2.2077 5.5123 13 6 1.4575 -1.9886 6.1052 14 8 1.6273 -2.2299 7.4307 15 6 0.5300 -2.5701 8.1364 16 1 -0.4123 -2.7200 7.6304 17 6 0.6114 -2.7275 9.5111 18 7 1.7594 -2.5445 10.1275 19 14 -0.9088 -3.1996 10.4888 20 1 -1.4203 -4.5079 10.0076 21 1 -0.5591 -3.3034 11.9283 22 1 -1.9556 -2.1619 10.3078 23 6 2.5205 -1.5216 5.3427 24 6 2.3481 -1.2758 3.9957 25 1 -0.3634 0.4917 0.9024 26 1 -0.3633 0.5357 -0.8770 27 1 -0.3633 -1.0273 -0.0254 28 1 3.1443 1.4263 -0.0255 29 1 1.6761 1.9622 -0.8771 30 1 1.7174 1.9472 0.9024 31 1 1.3061 -0.7696 -2.0255 32 1 2.9811 -0.3001 -1.5966 33 1 1.4030 -2.7651 -0.6751 34 1 3.0651 -2.6942 -1.3441 35 1 3.9446 -1.6761 0.6583 36 1 2.7411 -2.8192 1.3326 37 1 0.0721 -1.3982 1.6241 38 1 -0.9139 -2.1330 3.7043 39 1 -0.6069 -2.5666 6.1064 40 1 1.8162 -2.6543 11.0896 41 1 3.4820 -1.3510 5.8041 42 1 3.1747 -0.9131 3.4029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094303452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:04 Heat of formation + Delta-G solvation = -7.216873 kcal Electronic energy + Delta-G solvation = -21137.016338 eV Core-core repulsion = 18082.229622 eV Total energy + Delta-G solvation = -3054.786716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94055 -38.64701 -36.54018 -33.37721 -32.33769 -31.95790 -30.18839 -28.27796 -27.87713 -26.20680 -25.04669 -24.23641 -21.99218 -21.15237 -20.25290 -18.74574 -17.63814 -17.05171 -16.51606 -15.95946 -15.14281 -14.59579 -14.34106 -13.88587 -13.74433 -13.51147 -13.41152 -13.22564 -13.14611 -12.58657 -12.48440 -12.31947 -12.16672 -11.88194 -11.56898 -11.36179 -11.14115 -11.07669 -10.92455 -10.80807 -10.72130 -10.67038 -10.58990 -10.47917 -10.27671 -9.18438 -9.09956 -8.38544 -8.11908 -6.32839 -6.28446 -3.86010 2.25396 2.63208 3.20722 3.22018 3.24380 3.90404 4.09048 4.33433 4.46981 4.68432 4.74673 5.08237 5.16671 5.21857 5.23277 5.26294 5.39715 5.48928 5.50604 5.59198 5.64588 5.67904 5.73479 5.77598 5.82355 5.85082 5.89393 6.01976 6.09029 6.10129 6.22798 6.25588 6.27602 6.37595 6.61793 6.91927 6.98046 7.19942 7.36294 7.50845 7.70713 8.07450 8.15744 8.33258 9.17075 9.92412 10.89967 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.003419 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.850565 B = 8188.080854 C = 8374.684968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.143 4.143 7 C 0.164 3.836 8 H 0.077 0.923 9 N -0.752 5.752 10 C 0.127 3.873 11 C -0.145 4.145 12 C -0.189 4.189 13 C 0.112 3.888 14 O -0.190 6.190 15 C -0.387 4.387 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.272 1.272 23 C -0.150 4.150 24 C -0.147 4.147 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.391 0.609 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.267 0.733 41 H 0.115 0.885 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 4.160 -21.092 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.160 4.160 6 C -0.182 4.182 7 C 0.057 3.943 8 H 0.095 0.905 9 N -0.390 5.390 10 C 0.028 3.972 11 C -0.167 4.167 12 C -0.209 4.209 13 C 0.059 3.941 14 O -0.095 6.095 15 C -0.463 4.463 16 H 0.104 0.896 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.170 4.170 24 C -0.169 4.169 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.509 4.218 -20.724 21.155 hybrid contribution -1.156 -0.348 0.331 1.252 sum -1.665 3.869 -20.394 20.824 Atomic orbital electron populations 1.21820 0.94482 1.01460 1.01981 1.21408 0.95941 0.95483 0.94749 1.21898 1.00815 0.95043 1.01844 1.22496 1.00677 0.95531 0.96576 1.22468 1.00703 0.96390 0.96406 1.22958 0.99114 0.99767 0.96379 1.21352 0.88378 0.93800 0.90797 0.90532 1.44645 1.12388 1.76474 1.05465 1.17429 0.94156 1.01708 0.83865 1.20216 0.96966 1.05668 0.93847 1.20976 0.98267 1.07154 0.94533 1.19232 0.93051 0.95788 0.85997 1.83986 1.34633 1.76714 1.14136 1.21182 0.88188 1.47559 0.89415 0.89559 1.25199 0.98338 0.97384 0.95759 1.70040 1.24173 1.46770 1.09709 0.85847 0.80218 0.79121 0.78586 1.19703 1.20444 1.19707 1.20030 0.98223 1.05760 0.92969 1.20200 0.95682 1.06700 0.94285 0.91766 0.92760 0.92543 0.92492 0.92700 0.92369 0.91781 0.91513 0.91769 0.91946 0.91575 0.90779 0.77163 0.87823 0.85623 0.92295 0.86651 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.02 37.16 0.26 -0.99 16 2 C -0.08 -0.69 0.94 -153.39 -0.14 -0.84 16 3 C -0.14 -1.20 8.16 37.16 0.30 -0.89 16 4 C -0.12 -0.95 5.90 -25.07 -0.15 -1.09 16 5 C -0.12 -1.11 6.91 -24.67 -0.17 -1.28 16 6 C -0.14 -1.56 6.55 -25.00 -0.16 -1.73 16 7 C 0.16 1.88 2.55 -66.81 -0.17 1.71 16 8 H 0.08 0.96 6.00 -51.93 -0.31 0.65 16 9 N -0.75 -10.13 4.66 -51.03 -0.24 -10.37 16 10 C 0.13 2.20 6.66 -83.70 -0.56 1.64 16 11 C -0.14 -2.72 9.89 -39.40 -0.39 -3.11 16 12 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 13 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.59 9.76 -0.06 0.00 -5.59 16 15 C -0.39 -11.15 9.48 30.87 0.29 -10.86 16 16 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 17 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 18 N -0.87 -26.33 13.67 55.48 0.76 -25.57 16 19 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 24 C -0.15 -2.69 9.20 -39.40 -0.36 -3.06 16 25 H 0.06 0.64 7.71 -51.93 -0.40 0.24 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.49 6.94 -51.93 -0.36 0.13 16 28 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.48 7.84 -51.93 -0.41 0.08 16 32 H 0.07 0.51 7.84 -51.92 -0.41 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.39 4.77 5.81 -40.82 -0.24 4.53 16 38 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 42 H 0.11 1.76 6.23 -52.49 -0.33 1.43 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -30.97 332.15 -8.23 -39.21 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.38 Total: 6.47 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.36 Total: -25.29 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.52 Total: -35.94 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.97 -8.23 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094303452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.989 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds