Wall clock time and date at job start Mon Mar 30 2020 01:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 110.05809 * 2 1 4 4 C 1.54263 * 110.03198 * 238.58151 * 2 1 3 5 5 C 1.54890 * 104.19670 * 264.32394 * 4 2 1 6 6 C 1.55011 * 102.75439 * 322.04576 * 5 4 2 7 7 C 1.53877 * 110.03175 * 121.41289 * 2 1 3 8 8 H 1.09000 * 110.03359 * 238.61615 * 7 2 1 9 9 N 1.46492 * 110.03060 * 0.02562 * 7 2 1 10 10 C 1.39787 * 119.99538 * 204.30455 * 9 7 2 11 11 C 1.38953 * 120.00380 * 180.02562 * 10 9 7 12 12 C 1.38006 * 119.99281 * 180.02562 * 11 10 9 13 13 C 1.38896 * 120.00830 * 359.97438 * 12 11 10 14 14 O 1.35796 * 119.99587 * 179.97438 * 13 12 11 15 15 C 1.34818 * 117.00035 * 354.46942 * 14 13 12 16 16 H 1.08003 * 119.99619 * 5.06396 * 15 14 13 17 17 C 1.38615 * 119.99844 * 185.06164 * 15 14 13 18 18 N 1.31578 * 120.00292 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99781 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47328 * 60.00148 * 19 17 15 21 21 H 1.48498 * 109.47269 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47001 * 300.00043 * 19 17 15 23 23 C 1.38902 * 120.01085 * 0.02562 * 13 12 11 24 24 C 1.38007 * 120.00582 * 359.97438 * 23 13 12 25 25 H 1.09001 * 109.47212 * 298.58526 * 1 2 3 26 26 H 1.09004 * 109.46963 * 58.58354 * 1 2 3 27 27 H 1.08995 * 109.47251 * 178.58498 * 1 2 3 28 28 H 1.08995 * 109.47263 * 181.41976 * 3 2 1 29 29 H 1.09003 * 109.46491 * 301.41705 * 3 2 1 30 30 H 1.09000 * 109.46986 * 61.41346 * 3 2 1 31 31 H 1.08996 * 110.49076 * 23.00598 * 4 2 1 32 32 H 1.09009 * 110.48612 * 145.64541 * 4 2 1 33 33 H 1.08999 * 110.74994 * 80.37435 * 5 4 2 34 34 H 1.08996 * 110.75523 * 203.55857 * 5 4 2 35 35 H 1.08999 * 110.50564 * 279.29299 * 6 5 4 36 36 H 1.09000 * 110.52486 * 156.61143 * 6 5 4 37 37 H 0.96995 * 120.00605 * 24.31286 * 9 7 2 38 38 H 1.08005 * 120.00215 * 0.03920 * 11 10 9 39 39 H 1.08009 * 119.99638 * 179.72579 * 12 11 10 40 40 H 0.97003 * 119.99814 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99509 * 179.97438 * 23 13 12 42 42 H 1.07996 * 120.00234 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 2.3280 -2.1902 -0.7190 6 6 2.8882 -1.9406 0.7046 7 6 2.0570 -0.7535 1.2338 8 1 2.6860 -0.0950 1.8329 9 7 0.9359 -1.2454 2.0381 10 6 1.1109 -1.4949 3.4024 11 6 0.0477 -1.9620 4.1654 12 6 0.2207 -2.2077 5.5123 13 6 1.4575 -1.9886 6.1052 14 8 1.6273 -2.2299 7.4307 15 6 0.5300 -2.5701 8.1364 16 1 -0.4123 -2.7200 7.6304 17 6 0.6114 -2.7275 9.5111 18 7 1.7594 -2.5445 10.1275 19 14 -0.9088 -3.1996 10.4888 20 1 -1.4203 -4.5079 10.0076 21 1 -0.5591 -3.3034 11.9283 22 1 -1.9556 -2.1619 10.3078 23 6 2.5205 -1.5216 5.3427 24 6 2.3481 -1.2758 3.9957 25 1 -0.3634 0.4917 0.9024 26 1 -0.3633 0.5357 -0.8770 27 1 -0.3633 -1.0273 -0.0254 28 1 3.1443 1.4263 -0.0255 29 1 1.6761 1.9622 -0.8771 30 1 1.7174 1.9472 0.9024 31 1 1.3061 -0.7696 -2.0255 32 1 2.9811 -0.3001 -1.5966 33 1 1.4030 -2.7651 -0.6751 34 1 3.0651 -2.6942 -1.3441 35 1 3.9446 -1.6761 0.6583 36 1 2.7411 -2.8192 1.3326 37 1 0.0721 -1.3982 1.6241 38 1 -0.9139 -2.1330 3.7043 39 1 -0.6069 -2.5666 6.1064 40 1 1.8162 -2.6543 11.0896 41 1 3.4820 -1.3510 5.8041 42 1 3.1747 -0.9131 3.4029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094303452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:04 Heat of formation + Delta-G solvation = -24.776606 kcal Electronic energy + Delta-G solvation = -21137.777785 eV Core-core repulsion = 18082.229622 eV Total energy + Delta-G solvation = -3055.548163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06424 -40.21018 -38.20015 -34.83780 -33.92135 -33.09657 -31.81509 -29.54795 -28.74770 -27.62165 -26.68299 -25.18206 -23.60298 -22.55654 -21.31958 -19.99671 -19.18760 -18.82184 -17.83493 -17.10693 -16.28383 -16.11165 -15.94102 -15.37249 -15.20746 -14.89946 -14.51140 -14.31910 -14.13606 -14.02723 -13.89720 -13.53862 -13.43571 -13.22398 -12.80098 -12.70898 -12.54398 -12.31956 -12.16976 -12.12230 -11.90805 -11.69687 -11.41080 -11.39867 -11.31351 -11.06942 -10.85970 -10.11901 -9.76511 -8.38575 -7.88918 -6.02253 0.59647 0.95397 1.36548 1.48068 1.52863 2.23314 2.70885 2.92244 3.26304 3.55265 3.67406 3.73696 3.92826 4.14718 4.18473 4.35115 4.42526 4.45700 4.49287 4.57110 4.64507 4.69946 4.79990 4.85217 4.93530 4.94782 5.01603 5.08281 5.11714 5.12912 5.16774 5.25553 5.30340 5.35047 5.39838 5.47462 5.52471 5.55543 5.58561 5.79776 6.02310 6.12161 6.68994 7.06040 7.09350 7.94480 8.85883 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.003419 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.850565 B = 8188.080854 C = 8374.684968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.143 4.143 7 C 0.154 3.846 8 H 0.069 0.931 9 N -0.737 5.737 10 C 0.156 3.844 11 C -0.149 4.149 12 C -0.192 4.192 13 C 0.060 3.940 14 O -0.243 6.243 15 C -0.407 4.407 16 H 0.098 0.902 17 C -0.029 4.029 18 N -0.928 5.928 19 Si 1.017 2.983 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.155 4.155 24 C -0.146 4.146 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.402 0.598 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.111 0.889 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 4.577 -24.485 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.182 4.182 7 C 0.049 3.951 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.055 3.945 11 C -0.171 4.171 12 C -0.212 4.212 13 C 0.010 3.990 14 O -0.151 6.151 15 C -0.484 4.484 16 H 0.115 0.885 17 C -0.225 4.225 18 N -0.567 5.567 19 Si 0.836 3.164 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.183 1.183 23 C -0.175 4.175 24 C -0.168 4.168 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.241 0.759 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.129 0.871 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.938 4.651 -24.227 24.745 hybrid contribution -0.647 -0.386 0.984 1.239 sum -2.584 4.265 -23.243 23.772 Atomic orbital electron populations 1.21824 0.94094 1.01720 1.02173 1.21389 0.96225 0.95636 0.93902 1.21899 1.01190 0.94532 1.01933 1.22474 1.01513 0.94451 0.96176 1.22453 1.00746 0.97203 0.95234 1.22921 0.99720 0.98302 0.97266 1.21606 0.87757 0.94295 0.91477 0.91306 1.44773 1.13762 1.74926 1.03876 1.17556 0.93168 0.98294 0.85491 1.20474 0.98856 1.05244 0.92527 1.21040 0.97061 1.07015 0.96044 1.19718 0.95244 0.98865 0.85125 1.83933 1.35511 1.79349 1.16353 1.21722 0.88779 1.47654 0.90242 0.88494 1.26530 1.02152 0.97158 0.96618 1.70202 1.27060 1.49375 1.10101 0.84678 0.75641 0.79423 0.76641 1.18237 1.19763 1.18289 1.20227 0.97489 1.05505 0.94249 1.20426 0.97153 1.06187 0.93036 0.93000 0.91179 0.92257 0.92018 0.91269 0.93588 0.90467 0.90553 0.92082 0.90849 0.90642 0.93002 0.75889 0.84535 0.86394 0.92153 0.87096 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.02 71.98 0.51 -1.50 16 2 C -0.07 -1.06 0.94 -51.46 -0.05 -1.11 16 3 C -0.14 -1.94 8.16 71.99 0.59 -1.35 16 4 C -0.11 -1.34 5.90 31.67 0.19 -1.15 16 5 C -0.12 -1.76 6.91 31.93 0.22 -1.54 16 6 C -0.14 -2.73 6.55 31.71 0.21 -2.53 16 7 C 0.15 3.10 2.55 45.72 0.12 3.22 16 8 H 0.07 1.53 6.00 -2.39 -0.01 1.52 16 9 N -0.74 -17.69 4.66 -315.37 -1.47 -19.16 16 10 C 0.16 5.11 6.66 38.21 0.25 5.37 16 11 C -0.15 -5.35 9.89 22.39 0.22 -5.13 16 12 C -0.19 -8.71 9.16 22.37 0.20 -8.50 16 13 C 0.06 3.13 6.65 22.59 0.15 3.28 16 14 O -0.24 -15.29 9.76 -23.12 -0.23 -15.52 16 15 C -0.41 -24.67 9.48 67.91 0.64 -24.03 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 17 C -0.03 -1.68 5.49 84.82 0.47 -1.22 16 18 N -0.93 -59.02 13.67 21.61 0.30 -58.73 16 19 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 C -0.15 -6.95 9.98 22.37 0.22 -6.72 16 24 C -0.15 -5.22 9.20 22.38 0.21 -5.01 16 25 H 0.05 0.88 7.71 -2.39 -0.02 0.86 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.06 0.81 6.94 -2.39 -0.02 0.80 16 28 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.81 7.84 -2.39 -0.02 0.79 16 32 H 0.08 0.84 7.84 -2.38 -0.02 0.82 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.23 8.04 -2.39 -0.02 1.22 16 37 H 0.40 8.38 5.81 -92.71 -0.54 7.84 16 38 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.14 4.14 6.23 -2.91 -0.02 4.12 16 Total: -1.00 -71.79 332.15 5.25 -66.55 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.47 Total: 28.33 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 4.15 Total: -47.92 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.17 Total: -77.89 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.23 Total: -15.52 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.79 5.25 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094303452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.770 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds