Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 110.05800 * 2 1 4 4 C 1.54268 * 110.03010 * 121.41523 * 2 1 3 5 5 C 1.54888 * 104.31172 * 142.95962 * 4 2 1 6 6 C 1.54890 * 102.74930 * 321.99113 * 5 4 2 7 7 C 1.54212 * 110.14365 * 238.43788 * 2 1 3 8 8 H 1.09005 * 110.04451 * 121.42296 * 7 2 1 9 9 N 1.46501 * 110.02726 * 0.04036 * 7 2 1 10 10 C 1.39786 * 120.00091 * 156.33429 * 9 7 2 11 11 C 1.38948 * 120.00682 * 359.72554 * 10 9 7 12 12 C 1.38009 * 119.99230 * 179.76905 * 11 10 9 13 13 C 1.38901 * 120.00595 * 0.50668 * 12 11 10 14 14 O 1.35798 * 119.99218 * 179.77059 * 13 12 11 15 15 C 1.34809 * 116.99718 * 174.44145 * 14 13 12 16 16 H 1.07997 * 120.00507 * 5.04946 * 15 14 13 17 17 C 1.38622 * 119.99889 * 185.05938 * 15 14 13 18 18 N 1.31589 * 120.00097 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00059 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47074 * 119.99628 * 19 17 15 22 22 H 1.48498 * 109.47145 * 239.99562 * 19 17 15 23 23 C 1.38899 * 120.01089 * 359.74721 * 13 12 11 24 24 C 1.38007 * 120.00634 * 359.97438 * 23 13 12 25 25 H 1.09004 * 109.47244 * 300.03836 * 1 2 3 26 26 H 1.08996 * 109.46755 * 60.03439 * 1 2 3 27 27 H 1.08998 * 109.47515 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47076 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47203 * 299.96407 * 3 2 1 30 30 H 1.09001 * 109.47030 * 59.96269 * 3 2 1 31 31 H 1.09001 * 110.48475 * 24.21501 * 4 2 1 32 32 H 1.08997 * 110.48855 * 261.70486 * 4 2 1 33 33 H 1.09001 * 110.75775 * 80.30697 * 5 4 2 34 34 H 1.09008 * 110.75810 * 203.67806 * 5 4 2 35 35 H 1.09003 * 110.48682 * 156.62134 * 6 5 4 36 36 H 1.09003 * 110.48466 * 279.26276 * 6 5 4 37 37 H 0.97003 * 119.99900 * 336.34147 * 9 7 2 38 38 H 1.07998 * 119.99873 * 0.02562 * 11 10 9 39 39 H 1.07998 * 119.99640 * 180.23054 * 12 11 10 40 40 H 0.96997 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.08002 * 119.99140 * 180.02562 * 23 13 12 42 42 H 1.08005 * 120.00293 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3150 -1.5006 0.7225 6 6 2.8915 -1.9433 -0.7001 7 6 2.0611 -0.7578 -1.2336 8 1 2.6910 -0.1006 -1.8332 9 7 0.9416 -1.2516 -2.0394 10 6 1.1231 -1.5168 -3.3998 11 6 2.3637 -1.3067 -3.9893 12 6 2.5438 -1.5731 -5.3314 13 6 1.4823 -2.0413 -6.0952 14 8 1.6586 -2.2990 -7.4168 15 6 0.6236 -2.8589 -8.0745 16 1 -0.3200 -3.0071 -7.5704 17 6 0.7705 -3.2447 -9.3978 18 7 1.9200 -3.0638 -10.0122 19 14 -0.6634 -4.0213 -10.3090 20 1 -1.8350 -4.1138 -9.4013 21 1 -1.0131 -3.1855 -11.4858 22 1 -0.2818 -5.3823 -10.7643 23 6 0.2407 -2.2464 -5.5073 24 6 0.0615 -1.9856 -4.1640 25 1 -0.3634 0.5144 0.8897 26 1 -0.3633 0.5133 -0.8903 27 1 -0.3634 -1.0276 0.0005 28 1 3.1447 1.4260 0.0005 29 1 1.6972 1.9545 -0.8903 30 1 1.6961 1.9549 0.8897 31 1 1.3141 -1.4659 1.5967 32 1 2.3275 -0.0538 2.0264 33 1 4.1719 -0.8283 0.6788 34 1 3.5336 -2.3666 1.3475 35 1 3.7689 -2.1068 -1.3258 36 1 2.2818 -2.8457 -0.6531 37 1 0.0744 -1.3945 -1.6288 38 1 3.1879 -0.9388 -3.3963 39 1 3.5090 -1.4134 -5.7888 40 1 2.0227 -3.3334 -10.9382 41 1 -0.5844 -2.6109 -6.1014 42 1 -0.9041 -2.1447 -3.7070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094303453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -7.848796 kcal Electronic energy + Delta-G solvation = -21100.828576 eV Core-core repulsion = 18046.014458 eV Total energy + Delta-G solvation = -3054.814118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89254 -38.64899 -36.55946 -33.45227 -32.38817 -31.96516 -30.17993 -28.27516 -27.75592 -26.24742 -25.06037 -24.20498 -21.99334 -21.07813 -20.41947 -18.72729 -17.63727 -17.14993 -16.46804 -15.79666 -15.03339 -14.78403 -14.37339 -14.06388 -13.72365 -13.47492 -13.41979 -13.20496 -12.97197 -12.57205 -12.50531 -12.43820 -12.20050 -11.83602 -11.57696 -11.37718 -11.17819 -11.11779 -10.98775 -10.78153 -10.70278 -10.67850 -10.57228 -10.42352 -10.27688 -9.19016 -9.10313 -8.38821 -8.12064 -6.33286 -6.28701 -3.86257 2.25230 2.62937 3.19924 3.21268 3.26440 3.89920 4.08709 4.32696 4.46866 4.66420 4.74421 5.08964 5.16558 5.21358 5.23564 5.25429 5.36663 5.48633 5.51990 5.55504 5.60616 5.68632 5.73974 5.78033 5.79641 5.84436 5.90395 5.97912 6.09117 6.12337 6.20898 6.26362 6.27748 6.36643 6.62016 6.91742 6.97826 7.19627 7.36826 7.50694 7.70506 8.07006 8.15571 8.32781 9.16890 9.92341 10.89680 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040025 B = 0.003400 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.397748 B = 8233.140365 C = 8480.728387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.124 4.124 6 C -0.141 4.141 7 C 0.164 3.836 8 H 0.077 0.923 9 N -0.754 5.754 10 C 0.127 3.873 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.112 3.888 14 O -0.190 6.190 15 C -0.385 4.385 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.189 4.189 24 C -0.145 4.145 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.392 0.608 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.266 0.734 41 H 0.126 0.874 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 5.098 21.015 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.180 4.180 7 C 0.057 3.943 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.170 4.170 13 C 0.059 3.941 14 O -0.095 6.095 15 C -0.462 4.462 16 H 0.106 0.894 17 C -0.168 4.168 18 N -0.507 5.507 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.209 4.209 24 C -0.167 4.167 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.229 0.771 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.519 5.155 20.653 21.293 hybrid contribution -1.095 -0.520 -0.323 1.254 sum -1.614 4.635 20.330 20.914 Atomic orbital electron populations 1.21835 0.94565 1.01483 1.01961 1.21438 0.95773 0.95556 0.94846 1.21881 1.00935 0.94869 1.01785 1.22469 0.97450 0.98714 0.96564 1.22453 0.97497 0.99725 0.96556 1.22940 1.00148 0.99189 0.95713 1.21453 0.88298 0.93862 0.90688 0.90489 1.44670 1.12129 1.76348 1.05967 1.17432 0.94167 1.01568 0.83966 1.20198 0.95645 1.06628 0.94407 1.20031 0.97824 1.06280 0.92834 1.19232 0.92853 0.96326 0.85654 1.83986 1.39949 1.70600 1.14982 1.21278 0.91264 1.39219 0.94459 0.89447 1.25211 0.98036 0.97496 0.96011 1.70062 1.23475 1.45351 1.11773 0.85705 0.79936 0.78695 0.79400 1.19283 1.20342 1.20341 1.20980 0.98038 1.07185 0.94704 1.20217 0.96949 1.05643 0.93897 0.92718 0.91825 0.92521 0.92479 0.92387 0.92699 0.91640 0.91743 0.91580 0.91763 0.91540 0.91127 0.77115 0.87188 0.86648 0.92405 0.85605 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.04 37.16 0.26 -0.99 16 2 C -0.08 -0.70 0.95 -153.21 -0.14 -0.84 16 3 C -0.14 -1.18 8.16 37.16 0.30 -0.88 16 4 C -0.11 -0.94 5.89 -25.07 -0.15 -1.09 16 5 C -0.12 -1.08 6.91 -24.74 -0.17 -1.25 16 6 C -0.14 -1.55 6.53 -25.07 -0.16 -1.72 16 7 C 0.16 1.89 2.54 -66.63 -0.17 1.72 16 8 H 0.08 0.97 6.04 -51.93 -0.31 0.66 16 9 N -0.75 -10.20 4.72 -50.86 -0.24 -10.44 16 10 C 0.13 2.21 6.66 -83.70 -0.56 1.65 16 11 C -0.15 -2.70 9.21 -39.40 -0.36 -3.07 16 12 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 13 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.60 9.76 -0.04 0.00 -5.60 16 15 C -0.39 -11.11 9.48 30.87 0.29 -10.82 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.00 5.49 -17.51 -0.10 0.90 16 18 N -0.87 -26.31 13.67 55.48 0.76 -25.55 16 19 Si 0.94 21.19 29.55 -169.99 -5.02 16.16 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 24 C -0.14 -2.73 9.89 -39.40 -0.39 -3.12 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.63 7.80 -51.93 -0.41 0.22 16 27 H 0.06 0.49 6.86 -51.93 -0.36 0.14 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 7.85 -51.93 -0.41 0.13 16 32 H 0.06 0.47 7.84 -51.93 -0.41 0.06 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.39 4.77 5.78 -40.82 -0.24 4.53 16 38 H 0.11 1.76 6.24 -52.49 -0.33 1.43 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 42 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -31.07 332.27 -8.24 -39.31 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.38 Total: 6.33 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.36 Total: -25.22 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.52 Total: -35.99 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: 0.00 Total: -5.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.07 -8.24 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094303453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.459 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds