Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 110.05800 * 2 1 4 4 C 1.54268 * 110.03010 * 121.41523 * 2 1 3 5 5 C 1.54888 * 104.31172 * 142.95962 * 4 2 1 6 6 C 1.54890 * 102.74930 * 321.99113 * 5 4 2 7 7 C 1.54212 * 110.14365 * 238.43788 * 2 1 3 8 8 H 1.09005 * 110.04451 * 121.42296 * 7 2 1 9 9 N 1.46501 * 110.02726 * 0.04036 * 7 2 1 10 10 C 1.39786 * 120.00091 * 156.33429 * 9 7 2 11 11 C 1.38948 * 120.00682 * 359.72554 * 10 9 7 12 12 C 1.38009 * 119.99230 * 179.76905 * 11 10 9 13 13 C 1.38901 * 120.00595 * 0.50668 * 12 11 10 14 14 O 1.35798 * 119.99218 * 179.77059 * 13 12 11 15 15 C 1.34809 * 116.99718 * 174.44145 * 14 13 12 16 16 H 1.07997 * 120.00507 * 5.04946 * 15 14 13 17 17 C 1.38622 * 119.99889 * 185.05938 * 15 14 13 18 18 N 1.31589 * 120.00097 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00059 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47074 * 119.99628 * 19 17 15 22 22 H 1.48498 * 109.47145 * 239.99562 * 19 17 15 23 23 C 1.38899 * 120.01089 * 359.74721 * 13 12 11 24 24 C 1.38007 * 120.00634 * 359.97438 * 23 13 12 25 25 H 1.09004 * 109.47244 * 300.03836 * 1 2 3 26 26 H 1.08996 * 109.46755 * 60.03439 * 1 2 3 27 27 H 1.08998 * 109.47515 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47076 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47203 * 299.96407 * 3 2 1 30 30 H 1.09001 * 109.47030 * 59.96269 * 3 2 1 31 31 H 1.09001 * 110.48475 * 24.21501 * 4 2 1 32 32 H 1.08997 * 110.48855 * 261.70486 * 4 2 1 33 33 H 1.09001 * 110.75775 * 80.30697 * 5 4 2 34 34 H 1.09008 * 110.75810 * 203.67806 * 5 4 2 35 35 H 1.09003 * 110.48682 * 156.62134 * 6 5 4 36 36 H 1.09003 * 110.48466 * 279.26276 * 6 5 4 37 37 H 0.97003 * 119.99900 * 336.34147 * 9 7 2 38 38 H 1.07998 * 119.99873 * 0.02562 * 11 10 9 39 39 H 1.07998 * 119.99640 * 180.23054 * 12 11 10 40 40 H 0.96997 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.08002 * 119.99140 * 180.02562 * 23 13 12 42 42 H 1.08005 * 120.00293 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3150 -1.5006 0.7225 6 6 2.8915 -1.9433 -0.7001 7 6 2.0611 -0.7578 -1.2336 8 1 2.6910 -0.1006 -1.8332 9 7 0.9416 -1.2516 -2.0394 10 6 1.1231 -1.5168 -3.3998 11 6 2.3637 -1.3067 -3.9893 12 6 2.5438 -1.5731 -5.3314 13 6 1.4823 -2.0413 -6.0952 14 8 1.6586 -2.2990 -7.4168 15 6 0.6236 -2.8589 -8.0745 16 1 -0.3200 -3.0071 -7.5704 17 6 0.7705 -3.2447 -9.3978 18 7 1.9200 -3.0638 -10.0122 19 14 -0.6634 -4.0213 -10.3090 20 1 -1.8350 -4.1138 -9.4013 21 1 -1.0131 -3.1855 -11.4858 22 1 -0.2818 -5.3823 -10.7643 23 6 0.2407 -2.2464 -5.5073 24 6 0.0615 -1.9856 -4.1640 25 1 -0.3634 0.5144 0.8897 26 1 -0.3633 0.5133 -0.8903 27 1 -0.3634 -1.0276 0.0005 28 1 3.1447 1.4260 0.0005 29 1 1.6972 1.9545 -0.8903 30 1 1.6961 1.9549 0.8897 31 1 1.3141 -1.4659 1.5967 32 1 2.3275 -0.0538 2.0264 33 1 4.1719 -0.8283 0.6788 34 1 3.5336 -2.3666 1.3475 35 1 3.7689 -2.1068 -1.3258 36 1 2.2818 -2.8457 -0.6531 37 1 0.0744 -1.3945 -1.6288 38 1 3.1879 -0.9388 -3.3963 39 1 3.5090 -1.4134 -5.7888 40 1 2.0227 -3.3334 -10.9382 41 1 -0.5844 -2.6109 -6.1014 42 1 -0.9041 -2.1447 -3.7070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094303453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -25.473678 kcal Electronic energy + Delta-G solvation = -21101.592848 eV Core-core repulsion = 18046.014458 eV Total energy + Delta-G solvation = -3055.578390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03268 -40.19343 -38.21665 -34.89771 -33.94519 -33.14239 -31.81181 -29.60058 -28.53108 -27.67838 -26.70916 -25.17053 -23.60210 -22.48732 -21.45794 -19.99690 -19.17880 -18.86309 -17.89959 -16.94945 -16.22447 -16.04167 -15.91139 -15.47124 -15.29726 -15.07572 -14.48288 -14.39909 -14.09065 -13.93251 -13.72612 -13.62495 -13.42561 -13.25569 -12.86901 -12.70170 -12.59053 -12.29151 -12.26361 -12.07719 -11.87470 -11.67215 -11.44526 -11.38644 -11.28215 -11.07502 -10.87921 -10.12412 -9.76919 -8.39060 -7.89453 -6.02528 0.59240 0.94821 1.36626 1.45712 1.54959 2.22779 2.70454 2.91930 3.25813 3.54473 3.67634 3.73929 3.91168 4.13940 4.18208 4.37089 4.43524 4.45375 4.49189 4.54244 4.59272 4.70014 4.80792 4.83251 4.91827 4.95861 5.02707 5.06192 5.10187 5.15149 5.19094 5.25713 5.28387 5.36148 5.40564 5.45841 5.52838 5.54991 5.57800 5.79503 6.02048 6.12138 6.68176 7.05744 7.08933 7.94291 8.85833 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040025 B = 0.003400 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.397748 B = 8233.140365 C = 8480.728387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.142 4.142 7 C 0.155 3.845 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.156 3.844 11 C -0.146 4.146 12 C -0.155 4.155 13 C 0.060 3.940 14 O -0.243 6.243 15 C -0.405 4.405 16 H 0.098 0.902 17 C -0.029 4.029 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.192 4.192 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.403 0.597 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.269 0.731 41 H 0.118 0.882 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 5.417 24.393 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.181 4.181 7 C 0.049 3.951 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.055 3.945 11 C -0.168 4.168 12 C -0.175 4.175 13 C 0.011 3.989 14 O -0.152 6.152 15 C -0.482 4.482 16 H 0.115 0.885 17 C -0.225 4.225 18 N -0.567 5.567 19 Si 0.837 3.163 20 H -0.175 1.175 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.211 4.211 24 C -0.171 4.171 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.136 0.864 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.924 5.499 24.137 24.830 hybrid contribution -0.603 -0.501 -0.985 1.259 sum -2.527 4.998 23.152 23.819 Atomic orbital electron populations 1.21837 0.94125 1.01710 1.02232 1.21420 0.96099 0.95704 0.93948 1.21883 1.01217 0.94344 1.01984 1.22457 0.97087 0.98872 0.96277 1.22439 0.98064 1.00298 0.94904 1.22898 0.99484 0.98404 0.97301 1.21702 0.87677 0.94329 0.91377 0.91276 1.44805 1.13528 1.74803 1.04372 1.17562 0.93188 0.98209 0.85573 1.20424 0.97114 1.06132 0.93158 1.20226 0.97137 1.06001 0.94090 1.19715 0.94985 0.99273 0.84948 1.83933 1.40923 1.72983 1.17325 1.21795 0.91826 1.39374 0.95203 0.88478 1.26536 1.01394 0.97927 0.96671 1.70216 1.26335 1.47782 1.12398 0.84546 0.76201 0.77643 0.77898 1.17537 1.19459 1.19506 1.21038 0.96824 1.07073 0.96196 1.20476 0.98850 1.05185 0.92565 0.91149 0.92964 0.92244 0.92105 0.93549 0.91188 0.91244 0.90182 0.90860 0.90887 0.92449 0.92085 0.75806 0.84430 0.87086 0.92167 0.86418 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.04 71.98 0.51 -1.50 16 2 C -0.07 -1.06 0.95 -51.34 -0.05 -1.11 16 3 C -0.14 -1.91 8.16 71.98 0.59 -1.33 16 4 C -0.11 -1.36 5.89 31.67 0.19 -1.17 16 5 C -0.12 -1.68 6.91 31.88 0.22 -1.45 16 6 C -0.14 -2.76 6.53 31.67 0.21 -2.55 16 7 C 0.15 3.13 2.54 45.83 0.12 3.25 16 8 H 0.07 1.55 6.04 -2.38 -0.01 1.54 16 9 N -0.74 -17.79 4.72 -314.83 -1.49 -19.28 16 10 C 0.16 5.12 6.66 38.21 0.25 5.37 16 11 C -0.15 -5.24 9.21 22.39 0.21 -5.03 16 12 C -0.15 -6.94 9.98 22.37 0.22 -6.72 16 13 C 0.06 3.14 6.65 22.59 0.15 3.29 16 14 O -0.24 -15.29 9.76 -23.05 -0.22 -15.52 16 15 C -0.41 -24.53 9.48 67.91 0.64 -23.89 16 16 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 17 C -0.03 -1.73 5.49 84.82 0.47 -1.26 16 18 N -0.93 -58.95 13.67 21.61 0.30 -58.65 16 19 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 C -0.19 -8.70 9.16 22.37 0.20 -8.50 16 24 C -0.15 -5.35 9.89 22.39 0.22 -5.12 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.87 7.80 -2.39 -0.02 0.85 16 27 H 0.06 0.81 6.86 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.84 7.85 -2.39 -0.02 0.82 16 32 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 37 H 0.40 8.36 5.78 -92.71 -0.54 7.82 16 38 H 0.14 4.14 6.24 -2.91 -0.02 4.12 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 41 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 42 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -71.82 332.27 5.23 -66.58 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.48 Total: 28.08 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 4.15 Total: -47.72 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.19 Total: -77.93 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.22 Total: -15.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.82 5.23 -66.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094303453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.107 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds