Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 110.05342 * 2 1 4 4 C 1.54266 * 110.03168 * 238.58837 * 2 1 3 5 5 C 1.54886 * 104.19393 * 217.10535 * 4 2 1 6 6 C 1.54888 * 102.74912 * 37.94061 * 5 4 2 7 7 C 1.53868 * 110.03236 * 121.41841 * 2 1 3 8 8 H 1.08999 * 110.07529 * 238.58627 * 7 2 1 9 9 N 1.46497 * 110.03459 * 0.02562 * 7 2 1 10 10 C 1.39679 * 120.00124 * 203.62117 * 9 7 2 11 11 C 1.38997 * 120.03788 * 359.97438 * 10 9 7 12 12 C 1.38149 * 120.06531 * 180.02562 * 11 10 9 13 13 C 1.38171 * 120.13854 * 359.97438 * 12 11 10 14 14 C 1.38915 * 120.08020 * 0.04379 * 13 12 11 15 15 O 1.35750 * 120.03248 * 179.97438 * 14 13 12 16 16 C 1.34837 * 116.99874 * 174.49117 * 15 14 13 17 17 H 1.07997 * 120.00045 * 5.07831 * 16 15 14 18 18 C 1.38651 * 119.99803 * 185.08644 * 16 15 14 19 19 N 1.31561 * 120.00112 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00006 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47039 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47304 * 119.99706 * 20 18 16 23 23 H 1.48503 * 109.46841 * 239.99488 * 20 18 16 24 24 C 1.38742 * 120.03997 * 179.72547 * 10 9 7 25 25 H 1.08998 * 109.47330 * 298.57929 * 1 2 3 26 26 H 1.09001 * 109.47531 * 58.57689 * 1 2 3 27 27 H 1.09004 * 109.47486 * 178.57789 * 1 2 3 28 28 H 1.08999 * 109.46892 * 181.41249 * 3 2 1 29 29 H 1.08992 * 109.47182 * 301.41880 * 3 2 1 30 30 H 1.09002 * 109.46834 * 61.42163 * 3 2 1 31 31 H 1.09001 * 110.48631 * 98.42597 * 4 2 1 32 32 H 1.09001 * 110.48558 * 335.78144 * 4 2 1 33 33 H 1.09003 * 110.75642 * 279.62133 * 5 4 2 34 34 H 1.09007 * 110.91460 * 156.33076 * 5 4 2 35 35 H 1.09001 * 110.48377 * 203.37558 * 6 5 4 36 36 H 1.09002 * 110.48607 * 80.74198 * 6 5 4 37 37 H 0.96998 * 120.00039 * 23.34230 * 9 7 2 38 38 H 1.08003 * 119.97407 * 359.97438 * 11 10 9 39 39 H 1.08002 * 119.93288 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.96611 * 180.02562 * 13 12 11 41 41 H 0.96997 * 120.00106 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.07216 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3136 -1.5007 -0.7192 6 6 2.8874 -1.9406 0.7034 7 6 2.0570 -0.7536 1.2336 8 1 2.6865 -0.0959 1.8331 9 7 0.9359 -1.2456 2.0380 10 6 1.1146 -1.5087 3.3982 11 6 2.3560 -1.3043 3.9891 12 6 2.5335 -1.5647 5.3342 13 6 1.4783 -2.0284 6.0962 14 6 0.2352 -2.2351 5.5116 15 8 -0.8007 -2.6912 6.2610 16 6 -2.0061 -2.7615 5.6608 17 1 -2.0987 -2.5406 4.6078 18 6 -3.1267 -3.1174 6.3957 19 7 -3.0138 -3.3869 7.6785 20 14 -4.7968 -3.2141 5.5645 21 1 -4.6555 -2.8661 4.1277 22 1 -5.3329 -4.5932 5.6898 23 1 -5.7296 -2.2593 6.2153 24 6 0.0519 -1.9693 4.1620 25 1 -0.3634 0.4916 0.9024 26 1 -0.3634 0.5358 -0.8769 27 1 -0.3634 -1.0274 -0.0255 28 1 3.1442 1.4263 -0.0253 29 1 1.6760 1.9622 -0.8769 30 1 1.7174 1.9471 0.9025 31 1 2.3296 -0.0534 -2.0255 32 1 1.3142 -1.4659 -1.5967 33 1 4.1709 -0.8290 -0.6753 34 1 3.5356 -2.3677 -1.3415 35 1 3.7637 -2.1038 1.3307 36 1 2.2771 -2.8426 0.6569 37 1 0.0684 -1.3850 1.6270 38 1 3.1829 -0.9423 3.3961 39 1 3.4988 -1.4047 5.7913 40 1 1.6200 -2.2307 7.1476 41 1 -3.7977 -3.6362 8.1925 42 1 -0.9148 -2.1247 3.7062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094306096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -28.249436 kcal Electronic energy + Delta-G solvation = -21387.875200 eV Core-core repulsion = 18332.176444 eV Total energy + Delta-G solvation = -3055.698756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10332 -40.23944 -38.20461 -35.16462 -34.15192 -33.16439 -31.01038 -29.96520 -28.53749 -27.62500 -27.11615 -25.25450 -23.37108 -22.51350 -21.45279 -20.08960 -19.21465 -19.00540 -17.34033 -16.96073 -16.50690 -16.13084 -15.84428 -15.60680 -15.44959 -15.30062 -14.49496 -14.43937 -14.19822 -13.94806 -13.69110 -13.64603 -13.46910 -13.04573 -12.89630 -12.67471 -12.41630 -12.32071 -12.20623 -12.09182 -11.90121 -11.68626 -11.47213 -11.41346 -11.33704 -11.25023 -10.90190 -10.56009 -9.09755 -8.45459 -8.18897 -6.13731 0.77415 0.93498 1.33387 1.43175 1.51879 2.18050 2.59508 2.89519 3.27069 3.51427 3.60258 3.70226 3.87559 4.21091 4.33639 4.35959 4.41891 4.43094 4.45401 4.55363 4.62120 4.74568 4.78708 4.78904 4.87620 4.97518 5.01792 5.05694 5.08926 5.14000 5.16795 5.19575 5.24426 5.34323 5.37549 5.44291 5.51183 5.52839 5.76487 5.81688 6.06206 6.13795 6.66147 6.89275 7.00062 7.83641 8.78485 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020336 B = 0.004565 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.569547 B = 6132.510856 C = 7055.198669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.135 4.135 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.140 4.140 7 C 0.153 3.847 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.258 3.742 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.264 4.264 14 C 0.153 3.847 15 O -0.233 6.233 16 C -0.410 4.410 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.253 1.253 22 H -0.267 1.267 23 H -0.268 1.268 24 C -0.318 4.318 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.272 0.728 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.099 7.626 -19.984 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.193 4.193 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.179 4.179 7 C 0.048 3.952 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.153 3.847 11 C -0.287 4.287 12 C -0.045 4.045 13 C -0.285 4.285 14 C 0.102 3.898 15 O -0.139 6.139 16 C -0.486 4.486 17 H 0.115 0.885 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.177 1.177 22 H -0.192 1.192 23 H -0.193 1.193 24 C -0.342 4.342 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.237 0.763 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.125 7.568 -19.682 23.842 hybrid contribution -1.398 -0.438 0.287 1.493 sum 9.727 7.130 -19.395 22.839 Atomic orbital electron populations 1.21870 0.94886 1.01399 1.02107 1.21384 0.95513 0.96201 0.94184 1.21876 1.01549 0.93881 1.01955 1.22467 0.97229 0.98875 0.96240 1.22433 0.97954 1.00377 0.94677 1.22882 0.99548 0.97896 0.97573 1.21767 0.87303 0.94754 0.91333 0.90188 1.45200 1.13772 1.73081 1.04983 1.17592 0.92646 0.89959 0.84493 1.20544 0.96447 1.15852 0.95816 1.20820 0.97345 0.93194 0.93103 1.20243 0.92183 1.15601 1.00427 1.19636 0.88997 0.90565 0.90617 1.83947 1.16395 1.74034 1.39565 1.21814 0.82518 1.48705 0.95580 0.88496 1.26578 1.03314 0.95963 0.96242 1.70198 1.31919 1.45587 1.08349 0.84538 0.74649 0.78672 0.78361 1.17688 1.19228 1.19251 1.20483 0.99957 1.19493 0.94262 0.93433 0.90912 0.92888 0.91386 0.91241 0.93626 0.89816 0.91740 0.90208 0.90830 0.91473 0.92737 0.76330 0.84324 0.83126 0.87630 0.91899 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 7.03 71.98 0.51 -2.19 16 2 C -0.07 -1.23 0.94 -51.46 -0.05 -1.28 16 3 C -0.14 -1.99 8.15 71.98 0.59 -1.40 16 4 C -0.11 -1.54 5.90 31.67 0.19 -1.35 16 5 C -0.12 -1.65 6.91 31.88 0.22 -1.43 16 6 C -0.14 -2.79 6.53 31.67 0.21 -2.59 16 7 C 0.15 3.33 2.53 45.71 0.12 3.45 16 8 H 0.08 1.78 6.05 -2.39 -0.01 1.76 16 9 N -0.74 -21.32 4.68 -315.62 -1.48 -22.80 16 10 C 0.26 9.56 6.65 38.19 0.25 9.82 16 11 C -0.26 -8.88 9.21 22.43 0.21 -8.68 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 13 C -0.26 -12.04 9.99 22.42 0.22 -11.82 16 14 C 0.15 8.10 6.65 22.56 0.15 8.25 16 15 O -0.23 -14.70 9.76 -22.81 -0.22 -14.92 16 16 C -0.41 -24.83 9.49 67.92 0.64 -24.19 16 17 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 19 N -0.92 -58.10 13.67 21.61 0.30 -57.80 16 20 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 C -0.32 -14.78 9.01 22.52 0.20 -14.58 16 25 H 0.05 1.04 7.70 -2.39 -0.02 1.03 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.02 6.93 -2.39 -0.02 1.01 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 32 H 0.06 0.95 7.84 -2.39 -0.02 0.93 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.28 8.05 -2.39 -0.02 1.26 16 37 H 0.40 11.23 5.77 -92.71 -0.53 10.70 16 38 H 0.14 3.74 6.25 -2.91 -0.02 3.72 16 39 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.11 5.26 5.63 -2.91 -0.02 5.25 16 Total: -1.00 -72.02 332.16 5.24 -66.78 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.48 Total: 32.21 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 4.14 Total: -49.62 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.18 Total: -80.61 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -72.02 5.24 -66.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094306096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.526 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds