Wall clock time and date at job start Mon Mar 30 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.04994 * 2 1 4 4 C 1.54262 * 110.03134 * 238.58258 * 2 1 3 5 5 C 1.54890 * 104.19739 * 264.32106 * 4 2 1 6 6 C 1.54884 * 102.74645 * 322.06053 * 5 4 2 7 7 C 1.53871 * 110.03025 * 121.41256 * 2 1 3 8 8 H 1.09003 * 110.03393 * 0.02562 * 7 2 1 9 9 N 1.46497 * 110.03486 * 238.61881 * 7 2 1 10 10 C 1.39669 * 120.00307 * 155.69135 * 9 7 2 11 11 C 1.39005 * 120.03876 * 0.02562 * 10 9 7 12 12 C 1.38146 * 120.06307 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.14505 * 359.97438 * 12 11 10 14 14 C 1.38923 * 120.08047 * 0.04468 * 13 12 11 15 15 O 1.35740 * 120.03366 * 179.97438 * 14 13 12 16 16 C 1.34839 * 116.99986 * 174.48820 * 15 14 13 17 17 H 1.07998 * 119.99549 * 5.08389 * 16 15 14 18 18 C 1.38653 * 120.00030 * 185.08517 * 16 15 14 19 19 N 1.31560 * 119.99967 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47116 * 59.99648 * 20 18 16 22 22 H 1.48496 * 109.47244 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47191 * 300.00089 * 20 18 16 24 24 C 1.38746 * 120.04357 * 179.72952 * 10 9 7 25 25 H 1.09000 * 109.47211 * 298.58215 * 1 2 3 26 26 H 1.09001 * 109.47104 * 58.58827 * 1 2 3 27 27 H 1.09006 * 109.46871 * 178.58277 * 1 2 3 28 28 H 1.08995 * 109.46853 * 181.41323 * 3 2 1 29 29 H 1.09001 * 109.46982 * 301.41695 * 3 2 1 30 30 H 1.08996 * 109.47129 * 61.41452 * 3 2 1 31 31 H 1.09002 * 110.49011 * 23.00509 * 4 2 1 32 32 H 1.09003 * 110.48075 * 145.64441 * 4 2 1 33 33 H 1.08996 * 110.74900 * 80.37640 * 5 4 2 34 34 H 1.08994 * 110.75603 * 203.55936 * 5 4 2 35 35 H 1.09000 * 110.49139 * 279.25973 * 6 5 4 36 36 H 1.09002 * 110.48502 * 156.61766 * 6 5 4 37 37 H 0.97004 * 119.99965 * 335.70002 * 9 7 2 38 38 H 1.07999 * 119.97117 * 359.97438 * 11 10 9 39 39 H 1.08005 * 119.92936 * 179.97438 * 12 11 10 40 40 H 1.08002 * 119.96411 * 180.02562 * 13 12 11 41 41 H 0.96993 * 119.99601 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.07079 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3282 -2.1901 -0.7191 6 6 2.8876 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2338 8 1 1.2229 -1.1195 1.8323 9 7 2.9023 0.1315 2.0391 10 6 3.0759 -0.1186 3.4022 11 6 2.4474 -1.2072 3.9955 12 6 2.6183 -1.4547 5.3438 13 6 3.4143 -0.6220 6.1067 14 6 4.0449 0.4680 5.5200 15 8 4.8263 1.2857 6.2705 16 6 5.4995 2.2559 5.6196 17 1 5.3401 2.4076 4.5623 18 6 6.3963 3.0588 6.3077 19 7 6.5901 2.8743 7.5958 20 14 7.3294 4.4024 5.4058 21 1 6.3644 5.3654 4.8169 22 1 8.2181 5.1136 6.3595 23 1 8.1469 3.7968 4.3241 24 6 3.8807 0.7158 4.1645 25 1 -0.3633 0.4916 0.9024 26 1 -0.3633 0.5356 -0.8771 27 1 -0.3633 -1.0274 -0.0254 28 1 3.1442 1.4263 -0.0253 29 1 1.6760 1.9622 -0.8770 30 1 1.7173 1.9472 0.9024 31 1 1.3062 -0.7696 -2.0255 32 1 2.9811 -0.3000 -1.5966 33 1 1.4032 -2.7651 -0.6751 34 1 3.0652 -2.6942 -1.3441 35 1 3.9441 -1.6765 0.6572 36 1 2.7403 -2.8196 1.3310 37 1 3.3414 0.8913 1.6256 38 1 1.8242 -1.8598 3.4020 39 1 2.1286 -2.3010 5.8026 40 1 3.5462 -0.8185 7.1605 41 1 7.2172 3.4363 8.0772 42 1 4.3744 1.5594 3.7050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094306097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:16 Heat of formation + Delta-G solvation = -10.675988 kcal Electronic energy + Delta-G solvation = -21384.406012 eV Core-core repulsion = 18329.469298 eV Total energy + Delta-G solvation = -3054.936714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91586 -38.65575 -36.51554 -33.74703 -32.36574 -32.11265 -29.49052 -28.37485 -27.69995 -26.42718 -25.17245 -24.37198 -21.66821 -21.16070 -20.38249 -18.71356 -17.67535 -17.35238 -15.97273 -15.66227 -15.09909 -14.71929 -14.49620 -14.15420 -13.88758 -13.62181 -13.49072 -13.16068 -12.93843 -12.67864 -12.49736 -12.30826 -12.14999 -11.78688 -11.60294 -11.30976 -11.13028 -11.03721 -10.79191 -10.71959 -10.68942 -10.65344 -10.57213 -10.44324 -10.27913 -9.33224 -9.29093 -8.70906 -7.29101 -6.68017 -6.36830 -3.95990 2.44720 2.63938 3.16336 3.18187 3.20270 3.86050 4.03085 4.35001 4.48153 4.68896 4.77619 5.11243 5.17938 5.19541 5.24738 5.27577 5.39464 5.44448 5.53813 5.56322 5.64673 5.72229 5.79810 5.80945 5.83370 5.90915 6.00764 6.04763 6.11697 6.16664 6.23633 6.30253 6.35170 6.45092 6.72732 6.75254 7.11855 7.20510 7.45657 7.55377 7.75091 8.09797 8.11960 8.30001 9.09337 9.82852 10.81650 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.004551 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.892181 B = 6151.658459 C = 7035.854270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.161 3.839 8 H 0.081 0.919 9 N -0.748 5.748 10 C 0.250 3.750 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.179 6.179 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.866 5.866 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.303 4.303 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.269 0.731 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -6.486 -16.502 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.179 4.179 7 C 0.055 3.945 8 H 0.099 0.901 9 N -0.382 5.382 10 C 0.149 3.851 11 C -0.302 4.302 12 C -0.059 4.059 13 C -0.259 4.259 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.327 4.327 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.426 -6.480 -16.117 19.763 hybrid contribution 0.677 0.962 -0.648 1.343 sum -8.749 -5.518 -16.765 19.699 Atomic orbital electron populations 1.21885 0.93952 1.01725 1.01874 1.21391 0.95860 0.95637 0.94775 1.21869 1.00740 0.95362 1.02174 1.22480 1.00761 0.95439 0.96552 1.22445 1.00698 0.96552 0.96485 1.22915 1.00526 0.98704 0.95713 1.21464 0.92845 0.89438 0.90781 0.90137 1.44996 1.54804 1.32438 1.05929 1.17500 0.92005 0.92638 0.82977 1.20092 1.11830 1.02632 0.95672 1.20371 0.95601 0.96913 0.93053 1.20021 1.07475 0.98294 1.00129 1.19069 0.89198 0.88941 0.89265 1.83985 1.51587 1.38527 1.34165 1.21241 1.21093 1.09675 0.94479 0.89308 1.25254 0.96830 0.98613 0.95846 1.70032 1.34260 1.38502 1.07308 0.85821 0.79225 0.79884 0.78702 1.19638 1.20328 1.19634 1.20487 1.11420 1.06108 0.94709 0.92369 0.92639 0.92520 0.92419 0.92586 0.91686 0.91664 0.91522 0.91619 0.91713 0.91055 0.91487 0.76662 0.87890 0.87351 0.87032 0.92118 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.15 37.16 0.30 -0.94 16 2 C -0.08 -0.76 0.94 -153.39 -0.14 -0.90 16 3 C -0.14 -1.48 7.04 37.16 0.26 -1.22 16 4 C -0.11 -1.01 5.90 -25.07 -0.15 -1.16 16 5 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 6 C -0.14 -1.60 6.53 -25.07 -0.16 -1.76 16 7 C 0.16 1.97 2.55 -66.81 -0.17 1.80 16 8 H 0.08 1.04 6.01 -51.93 -0.31 0.73 16 9 N -0.75 -11.33 4.67 -51.10 -0.24 -11.56 16 10 C 0.25 4.76 6.65 -83.82 -0.56 4.20 16 11 C -0.28 -5.08 9.21 -39.33 -0.36 -5.45 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.32 9.99 -39.35 -0.39 -5.71 16 14 C 0.19 4.78 6.65 -39.13 -0.26 4.52 16 15 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 16 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.87 -25.91 13.67 55.48 0.76 -25.15 16 20 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 C -0.30 -6.84 9.01 -39.20 -0.35 -7.19 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.75 7.71 -51.93 -0.40 0.35 16 31 H 0.06 0.51 7.84 -51.93 -0.41 0.10 16 32 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.91 8.05 -51.93 -0.42 0.50 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 5.71 5.80 -40.82 -0.24 5.47 16 38 H 0.10 1.63 6.24 -52.49 -0.33 1.30 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.12 2.77 5.63 -52.48 -0.30 2.47 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -30.84 332.15 -8.23 -39.07 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.38 Total: 8.13 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.36 Total: -26.11 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.52 Total: -36.71 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.84 -8.23 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094306097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.398 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds