Wall clock time and date at job start Mon Mar 30 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.04994 * 2 1 4 4 C 1.54262 * 110.03134 * 238.58258 * 2 1 3 5 5 C 1.54890 * 104.19739 * 264.32106 * 4 2 1 6 6 C 1.54884 * 102.74645 * 322.06053 * 5 4 2 7 7 C 1.53871 * 110.03025 * 121.41256 * 2 1 3 8 8 H 1.09003 * 110.03393 * 0.02562 * 7 2 1 9 9 N 1.46497 * 110.03486 * 238.61881 * 7 2 1 10 10 C 1.39669 * 120.00307 * 155.69135 * 9 7 2 11 11 C 1.39005 * 120.03876 * 0.02562 * 10 9 7 12 12 C 1.38146 * 120.06307 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.14505 * 359.97438 * 12 11 10 14 14 C 1.38923 * 120.08047 * 0.04468 * 13 12 11 15 15 O 1.35740 * 120.03366 * 179.97438 * 14 13 12 16 16 C 1.34839 * 116.99986 * 174.48820 * 15 14 13 17 17 H 1.07998 * 119.99549 * 5.08389 * 16 15 14 18 18 C 1.38653 * 120.00030 * 185.08517 * 16 15 14 19 19 N 1.31560 * 119.99967 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47116 * 59.99648 * 20 18 16 22 22 H 1.48496 * 109.47244 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47191 * 300.00089 * 20 18 16 24 24 C 1.38746 * 120.04357 * 179.72952 * 10 9 7 25 25 H 1.09000 * 109.47211 * 298.58215 * 1 2 3 26 26 H 1.09001 * 109.47104 * 58.58827 * 1 2 3 27 27 H 1.09006 * 109.46871 * 178.58277 * 1 2 3 28 28 H 1.08995 * 109.46853 * 181.41323 * 3 2 1 29 29 H 1.09001 * 109.46982 * 301.41695 * 3 2 1 30 30 H 1.08996 * 109.47129 * 61.41452 * 3 2 1 31 31 H 1.09002 * 110.49011 * 23.00509 * 4 2 1 32 32 H 1.09003 * 110.48075 * 145.64441 * 4 2 1 33 33 H 1.08996 * 110.74900 * 80.37640 * 5 4 2 34 34 H 1.08994 * 110.75603 * 203.55936 * 5 4 2 35 35 H 1.09000 * 110.49139 * 279.25973 * 6 5 4 36 36 H 1.09002 * 110.48502 * 156.61766 * 6 5 4 37 37 H 0.97004 * 119.99965 * 335.70002 * 9 7 2 38 38 H 1.07999 * 119.97117 * 359.97438 * 11 10 9 39 39 H 1.08005 * 119.92936 * 179.97438 * 12 11 10 40 40 H 1.08002 * 119.96411 * 180.02562 * 13 12 11 41 41 H 0.96993 * 119.99601 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.07079 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3282 -2.1901 -0.7191 6 6 2.8876 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2338 8 1 1.2229 -1.1195 1.8323 9 7 2.9023 0.1315 2.0391 10 6 3.0759 -0.1186 3.4022 11 6 2.4474 -1.2072 3.9955 12 6 2.6183 -1.4547 5.3438 13 6 3.4143 -0.6220 6.1067 14 6 4.0449 0.4680 5.5200 15 8 4.8263 1.2857 6.2705 16 6 5.4995 2.2559 5.6196 17 1 5.3401 2.4076 4.5623 18 6 6.3963 3.0588 6.3077 19 7 6.5901 2.8743 7.5958 20 14 7.3294 4.4024 5.4058 21 1 6.3644 5.3654 4.8169 22 1 8.2181 5.1136 6.3595 23 1 8.1469 3.7968 4.3241 24 6 3.8807 0.7158 4.1645 25 1 -0.3633 0.4916 0.9024 26 1 -0.3633 0.5356 -0.8771 27 1 -0.3633 -1.0274 -0.0254 28 1 3.1442 1.4263 -0.0253 29 1 1.6760 1.9622 -0.8770 30 1 1.7173 1.9472 0.9024 31 1 1.3062 -0.7696 -2.0255 32 1 2.9811 -0.3000 -1.5966 33 1 1.4032 -2.7651 -0.6751 34 1 3.0652 -2.6942 -1.3441 35 1 3.9441 -1.6765 0.6572 36 1 2.7403 -2.8196 1.3310 37 1 3.3414 0.8913 1.6256 38 1 1.8242 -1.8598 3.4020 39 1 2.1286 -2.3010 5.8026 40 1 3.5462 -0.8185 7.1605 41 1 7.2172 3.4363 8.0772 42 1 4.3744 1.5594 3.7050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094306097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:16 Heat of formation + Delta-G solvation = -28.159477 kcal Electronic energy + Delta-G solvation = -21385.164153 eV Core-core repulsion = 18329.469298 eV Total energy + Delta-G solvation = -3055.694855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10049 -40.23762 -38.20382 -35.16429 -34.15098 -33.16035 -31.00903 -29.96481 -28.53428 -27.62424 -27.11225 -25.25256 -23.37004 -22.51311 -21.45379 -20.08758 -19.21396 -19.00179 -17.33501 -16.95757 -16.50624 -16.14131 -15.83580 -15.57694 -15.49357 -15.29601 -14.49201 -14.42797 -14.17104 -13.95595 -13.70076 -13.64329 -13.46528 -13.04344 -12.87830 -12.64955 -12.44171 -12.31169 -12.23531 -12.10386 -11.89975 -11.68659 -11.47037 -11.41268 -11.33749 -11.25232 -10.88800 -10.55658 -9.09645 -8.44977 -8.18757 -6.13428 0.77636 0.93718 1.33335 1.45256 1.50049 2.18576 2.59527 2.89746 3.27231 3.51493 3.60677 3.70292 3.87649 4.21137 4.33678 4.35938 4.42152 4.43116 4.45527 4.55546 4.62213 4.74608 4.78732 4.79186 4.87812 4.97491 5.01891 5.05709 5.08964 5.14142 5.16481 5.19670 5.24516 5.34503 5.37720 5.44292 5.51200 5.52895 5.76554 5.81807 6.06166 6.13858 6.66213 6.89470 7.00232 7.83758 8.78524 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.004551 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.892181 B = 6151.658459 C = 7035.854270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C -0.145 4.145 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.140 4.140 7 C 0.153 3.847 8 H 0.081 0.919 9 N -0.738 5.738 10 C 0.258 3.742 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.264 4.264 14 C 0.153 3.847 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.318 4.318 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.105 0.895 41 H 0.272 0.728 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -7.627 -19.919 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.179 4.179 7 C 0.048 3.952 8 H 0.099 0.901 9 N -0.370 5.370 10 C 0.153 3.847 11 C -0.287 4.287 12 C -0.045 4.045 13 C -0.285 4.285 14 C 0.102 3.898 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.115 0.885 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.342 4.342 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.097 -7.657 -19.604 23.793 hybrid contribution 0.963 1.096 0.249 1.480 sum -10.134 -6.561 -19.355 22.811 Atomic orbital electron populations 1.21878 0.92880 1.02545 1.01954 1.21389 0.96631 0.95100 0.94180 1.21867 1.00483 0.95775 1.02094 1.22472 1.01186 0.94924 0.96253 1.22428 1.01422 0.96928 0.94659 1.22880 0.99439 0.98027 0.97569 1.21769 0.92422 0.89640 0.91333 0.90133 1.45185 1.54422 1.32781 1.04602 1.17592 0.90637 0.91952 0.84494 1.20544 1.10521 1.01936 0.95692 1.20817 0.93746 0.96781 0.93119 1.20243 1.08969 0.98751 1.00518 1.19638 0.89804 0.89813 0.90574 1.83945 1.53806 1.40194 1.35954 1.21738 1.21704 1.10183 0.95143 0.88506 1.26577 0.97526 1.01187 0.96763 1.70185 1.35925 1.40535 1.09395 0.84670 0.77789 0.76317 0.77545 1.18209 1.19450 1.18305 1.20487 1.12706 1.06813 0.94210 0.93612 0.91252 0.91399 0.92892 0.90941 0.93423 0.89824 0.91741 0.90208 0.90840 0.92747 0.91494 0.76327 0.84328 0.83139 0.87642 0.91888 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.15 71.98 0.59 -1.40 16 2 C -0.07 -1.23 0.94 -51.46 -0.05 -1.28 16 3 C -0.14 -2.67 7.04 71.98 0.51 -2.17 16 4 C -0.11 -1.54 5.90 31.67 0.19 -1.35 16 5 C -0.12 -1.66 6.91 31.88 0.22 -1.43 16 6 C -0.14 -2.80 6.53 31.67 0.21 -2.60 16 7 C 0.15 3.33 2.55 45.72 0.12 3.44 16 8 H 0.08 1.78 6.01 -2.39 -0.01 1.77 16 9 N -0.74 -21.26 4.67 -315.60 -1.47 -22.73 16 10 C 0.26 9.56 6.65 38.20 0.25 9.81 16 11 C -0.26 -8.90 9.21 22.43 0.21 -8.69 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 13 C -0.26 -12.06 9.99 22.42 0.22 -11.84 16 14 C 0.15 8.10 6.65 22.56 0.15 8.25 16 15 O -0.23 -14.68 9.76 -22.72 -0.22 -14.90 16 16 C -0.41 -24.92 9.49 67.92 0.64 -24.27 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 19 N -0.92 -58.13 13.67 21.61 0.30 -57.83 16 20 Si 1.02 44.06 29.55 68.60 2.03 46.08 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 C -0.32 -14.78 9.01 22.52 0.20 -14.57 16 25 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.05 1.02 6.92 -2.39 -0.02 1.00 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.04 7.71 -2.39 -0.02 1.02 16 31 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 32 H 0.06 0.95 7.84 -2.39 -0.02 0.93 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.28 8.05 -2.39 -0.02 1.26 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.40 11.19 5.80 -92.71 -0.54 10.65 16 38 H 0.14 3.74 6.24 -2.91 -0.02 3.72 16 39 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.11 5.26 5.63 -2.91 -0.02 5.25 16 Total: -1.00 -71.99 332.15 5.25 -66.74 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.47 Total: 32.35 kcal Atomic # 6 Polarization: -53.85 SS G_CDS: 4.15 Total: -49.71 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.18 Total: -80.57 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.99 5.25 -66.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094306097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.578 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds