Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.50697 * 109.47020 * 239.99993 * 2 1 3 14 14 O 1.21299 * 119.99630 * 239.99752 * 13 2 1 15 15 N 1.34772 * 120.00259 * 59.99977 * 13 2 1 16 16 C 1.37095 * 120.00096 * 179.97438 * 15 13 2 17 17 H 1.08002 * 120.00225 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99963 * 179.97438 * 16 15 13 19 19 N 1.31403 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47507 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47216 * 120.00185 * 20 18 16 23 23 H 1.48509 * 109.46909 * 240.00024 * 20 18 16 24 24 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 25 25 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 26 26 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 29 29 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 30 30 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 32 32 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 33 33 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 34 34 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 35 35 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 41 41 H 0.96998 * 120.00086 * 359.97438 * 15 13 2 42 42 H 0.96998 * 120.00407 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 6 2.0324 -0.7104 -1.2304 14 8 2.7298 -1.6966 -1.1191 15 7 1.7068 -0.2500 -2.4545 16 6 2.1642 -0.8960 -3.5739 17 1 2.7851 -1.7741 -3.4748 18 6 1.8281 -0.4216 -4.8359 19 7 1.0722 0.6465 -4.9565 20 14 2.4508 -1.3022 -6.3611 21 1 3.2768 -2.4682 -5.9570 22 1 1.2958 -1.7694 -7.1691 23 1 3.2753 -0.3686 -7.1698 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7209 1.2495 31 1 1.6767 -1.7489 1.2492 32 1 0.4401 0.0000 2.4985 33 1 1.8934 1.0277 2.4985 34 1 3.1296 -0.7220 3.7480 35 1 1.6757 -1.7491 3.7475 36 1 -0.2549 -1.1693 5.1013 37 1 -1.0747 -0.0084 7.1121 38 1 0.2583 1.8007 8.1189 39 1 2.4058 2.4566 7.1080 40 1 3.2298 1.2897 5.1024 41 1 1.1489 0.5384 -2.5436 42 1 0.8379 0.9779 -5.8375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112632927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = -47.096567 kcal Electronic energy + Delta-G solvation = -20678.497331 eV Core-core repulsion = 17621.981302 eV Total energy + Delta-G solvation = -3056.516029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51083 -38.91834 -36.02569 -33.89653 -33.55227 -31.18645 -31.00820 -29.81626 -26.90248 -26.00528 -25.07985 -23.23165 -22.68688 -21.20793 -20.30046 -18.15429 -17.67690 -16.84714 -15.65122 -15.57154 -15.30902 -14.78608 -14.50765 -14.19038 -13.78531 -13.51748 -13.49404 -13.44409 -12.99393 -12.82264 -12.35603 -11.93529 -11.82590 -11.74764 -11.49934 -11.34294 -11.29680 -11.10405 -11.06571 -10.59465 -10.53685 -10.34295 -10.30703 -10.09496 -10.04739 -9.48919 -9.04908 -8.77054 -8.21164 -7.92615 -6.39010 -3.79397 1.24538 1.27217 3.17616 3.27880 3.35277 3.66330 3.96835 4.19473 4.64733 4.72721 4.85064 4.94698 5.02128 5.13055 5.14828 5.24799 5.39685 5.42430 5.51470 5.58510 5.61343 5.73377 5.81494 5.92537 5.96231 5.98406 6.06360 6.09690 6.16887 6.26345 6.34958 6.37110 6.37546 6.41145 6.51531 6.58779 6.64929 6.80103 6.88814 6.89597 7.57848 8.10226 8.65105 9.21082 9.60054 10.11484 10.78861 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047390 B = 0.002964 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.705295 B = 9445.140691 C = 9544.831399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.087 4.087 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.073 4.073 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.131 4.131 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.452 3.548 14 O -0.597 6.597 15 N -0.560 5.560 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.928 3.072 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.392 0.608 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 3.517 19.979 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.125 4.125 5 C -0.153 4.153 6 C -0.121 4.121 7 C -0.073 4.073 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.150 4.150 11 C -0.138 4.138 12 C -0.137 4.137 13 C 0.238 3.762 14 O -0.483 6.483 15 N -0.196 5.196 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.755 3.245 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.226 0.774 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.085 2.948 19.850 20.176 hybrid contribution -0.121 0.169 -0.918 0.941 sum -2.206 3.118 18.933 19.314 Atomic orbital electron populations 1.21889 0.93938 1.02039 1.01775 1.20612 0.96193 0.96037 0.94932 1.21890 1.01275 0.94702 1.01774 1.21307 1.01011 0.98941 0.91259 1.21736 1.00990 0.99573 0.92988 1.20685 1.01049 0.98959 0.91435 1.20046 0.94604 0.96185 0.96460 1.21104 0.96030 1.00341 0.96242 1.21138 0.99710 0.96555 0.96370 1.21108 0.95446 0.98112 1.00289 1.21139 0.96458 0.99788 0.96386 1.21102 1.00077 0.96262 0.96275 1.19817 0.85273 0.86872 0.84285 1.90498 1.42499 1.28682 1.86577 1.41893 1.45714 1.27618 1.04338 1.19774 1.29025 1.10796 0.83286 0.87979 1.25250 0.96973 0.96524 0.99225 1.69617 1.36878 1.22981 1.24852 0.85827 0.78481 0.79276 0.80924 1.19261 1.20775 1.20778 0.92360 0.92222 0.92576 0.92576 0.92222 0.92361 0.91584 0.91582 0.91674 0.91668 0.90940 0.90935 0.86074 0.86304 0.86441 0.86303 0.86076 0.77374 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.02 37.16 0.30 -1.92 16 2 C -0.07 -1.33 0.64 -155.65 -0.10 -1.43 16 3 C -0.14 -2.22 8.02 37.16 0.30 -1.92 16 4 C -0.09 -1.39 3.56 -26.73 -0.10 -1.49 16 5 C -0.12 -1.43 4.49 -26.74 -0.12 -1.55 16 6 C -0.08 -0.93 5.34 -27.88 -0.15 -1.08 16 7 C -0.07 -0.79 5.13 -104.62 -0.54 -1.33 16 8 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 9 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 10 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 11 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 12 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 13 C 0.45 10.85 6.43 -10.99 -0.07 10.78 16 14 O -0.60 -16.49 15.56 5.54 0.09 -16.41 16 15 N -0.56 -14.44 5.07 -10.96 -0.06 -14.50 16 16 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 17 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 20 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 25 H 0.06 0.99 7.56 -51.93 -0.39 0.60 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.06 0.99 7.56 -51.93 -0.39 0.60 16 29 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 30 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 33 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 34 H 0.07 0.78 8.09 -51.93 -0.42 0.37 16 35 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.39 9.75 6.73 -40.82 -0.27 9.47 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -31.23 342.91 -8.33 -39.55 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.55 Total: 9.88 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.68 Total: -15.88 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.67 Total: -38.56 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.23 -8.33 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112632927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.545 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds