Wall clock time and date at job start Mon Mar 30 2020 02:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.50697 * 109.47020 * 239.99993 * 2 1 3 14 14 O 1.21299 * 119.99630 * 239.99752 * 13 2 1 15 15 N 1.34772 * 120.00259 * 59.99977 * 13 2 1 16 16 C 1.37095 * 120.00096 * 179.97438 * 15 13 2 17 17 H 1.08002 * 120.00225 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99963 * 179.97438 * 16 15 13 19 19 N 1.31403 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47507 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47216 * 120.00185 * 20 18 16 23 23 H 1.48509 * 109.46909 * 240.00024 * 20 18 16 24 24 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 25 25 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 26 26 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 29 29 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 30 30 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 32 32 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 33 33 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 34 34 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 35 35 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 41 41 H 0.96998 * 120.00086 * 359.97438 * 15 13 2 42 42 H 0.96998 * 120.00407 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 6 2.0324 -0.7104 -1.2304 14 8 2.7298 -1.6966 -1.1191 15 7 1.7068 -0.2500 -2.4545 16 6 2.1642 -0.8960 -3.5739 17 1 2.7851 -1.7741 -3.4748 18 6 1.8281 -0.4216 -4.8359 19 7 1.0722 0.6465 -4.9565 20 14 2.4508 -1.3022 -6.3611 21 1 3.2768 -2.4682 -5.9570 22 1 1.2958 -1.7694 -7.1691 23 1 3.2753 -0.3686 -7.1698 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7209 1.2495 31 1 1.6767 -1.7489 1.2492 32 1 0.4401 0.0000 2.4985 33 1 1.8934 1.0277 2.4985 34 1 3.1296 -0.7220 3.7480 35 1 1.6757 -1.7491 3.7475 36 1 -0.2549 -1.1693 5.1013 37 1 -1.0747 -0.0084 7.1121 38 1 0.2583 1.8007 8.1189 39 1 2.4058 2.4566 7.1080 40 1 3.2298 1.2897 5.1024 41 1 1.1489 0.5384 -2.5436 42 1 0.8379 0.9779 -5.8375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112632927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:02 Heat of formation + Delta-G solvation = -63.849248 kcal Electronic energy + Delta-G solvation = -20679.223781 eV Core-core repulsion = 17621.981302 eV Total energy + Delta-G solvation = -3057.242480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84673 -40.07061 -37.50077 -35.96637 -34.64048 -33.16296 -31.69511 -30.85875 -28.21582 -27.23636 -26.95007 -24.53094 -23.38039 -22.35770 -21.48778 -20.13873 -19.39495 -17.60337 -17.40162 -16.74455 -16.47488 -16.10088 -15.83075 -15.77029 -15.16458 -15.04845 -14.78786 -14.20017 -14.12114 -13.79169 -13.77260 -13.53020 -13.21291 -13.02446 -12.91605 -12.69761 -12.55444 -12.50703 -12.26091 -12.13318 -11.98073 -11.74406 -11.63044 -11.52227 -11.43680 -11.25261 -10.16804 -10.01587 -9.75218 -9.50900 -8.47942 -5.96805 0.52457 0.56869 1.34861 1.39680 1.54134 2.06139 2.28749 2.93954 3.19085 3.19451 3.80163 3.94132 3.96035 4.08022 4.11134 4.23622 4.33093 4.35663 4.43757 4.62277 4.64270 4.65159 4.72335 4.79606 4.85492 4.88518 4.94721 4.97993 5.12667 5.18461 5.18984 5.22604 5.27841 5.34930 5.40845 5.50053 5.58632 5.65451 5.69358 5.83347 6.00358 6.20564 6.58538 7.11277 7.56648 8.11814 8.69714 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047390 B = 0.002964 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.705295 B = 9445.140691 C = 9544.831399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.134 4.134 4 C -0.080 4.080 5 C -0.102 4.102 6 C -0.080 4.080 7 C -0.087 4.087 8 C -0.132 4.132 9 C -0.127 4.127 10 C -0.136 4.136 11 C -0.127 4.127 12 C -0.132 4.132 13 C 0.445 3.555 14 O -0.640 6.640 15 N -0.568 5.568 16 C -0.336 4.336 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.274 1.274 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.396 0.604 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 4.755 21.186 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 C -0.191 4.191 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.117 4.117 7 C -0.087 4.087 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.154 4.154 11 C -0.145 4.145 12 C -0.150 4.150 13 C 0.233 3.767 14 O -0.528 6.528 15 N -0.203 5.203 16 C -0.466 4.466 17 H 0.094 0.906 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.195 1.195 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.230 0.770 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.979 4.211 21.065 21.688 hybrid contribution 0.154 -0.219 -1.235 1.264 sum -2.825 3.993 19.830 20.425 Atomic orbital electron populations 1.21873 0.92054 1.01983 1.03208 1.20643 0.97601 0.96673 0.92287 1.21874 1.00761 0.93277 1.03208 1.21242 0.99949 0.98408 0.92244 1.21616 1.01364 0.99505 0.91420 1.20595 1.00975 0.98870 0.91256 1.20034 0.95237 0.96820 0.96628 1.21294 0.96070 1.00816 0.96826 1.21431 1.00538 0.96431 0.96059 1.21450 0.95209 0.97889 1.00813 1.21432 0.96846 1.00105 0.96075 1.21292 1.00457 0.96398 0.96859 1.21012 0.83878 0.86303 0.85540 1.90460 1.44208 1.30698 1.87412 1.41952 1.46062 1.27751 1.04571 1.19723 1.30576 1.11237 0.85056 0.90569 1.26043 0.96643 0.97062 1.01482 1.69673 1.36856 1.23478 1.26020 0.84883 0.78246 0.78060 0.77211 1.19911 1.19457 1.19465 0.88584 0.93055 0.93442 0.93443 0.93055 0.88584 0.93255 0.93254 0.90726 0.90721 0.91073 0.91067 0.85469 0.84447 0.84280 0.84446 0.85472 0.76992 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.02 71.98 0.58 -3.53 16 2 C -0.07 -2.44 0.64 -52.92 -0.03 -2.48 16 3 C -0.13 -4.11 8.02 71.98 0.58 -3.53 16 4 C -0.08 -2.56 3.56 30.59 0.11 -2.45 16 5 C -0.10 -2.33 4.49 30.59 0.14 -2.19 16 6 C -0.08 -1.68 5.34 29.85 0.16 -1.52 16 7 C -0.09 -1.75 5.13 -19.86 -0.10 -1.85 16 8 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 9 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 10 C -0.14 -2.09 10.05 22.27 0.22 -1.86 16 11 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 12 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 13 C 0.44 22.04 6.43 87.66 0.56 22.60 16 14 O -0.64 -36.93 15.56 -3.09 -0.05 -36.98 16 15 N -0.57 -30.16 5.07 -306.98 -1.56 -31.72 16 16 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 19 N -0.92 -50.39 13.05 21.66 0.28 -50.10 16 20 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H 0.10 2.23 6.43 -2.39 -0.02 2.21 16 25 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16 29 H 0.10 2.23 6.43 -2.39 -0.02 2.22 16 30 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.07 1.59 6.43 -2.39 -0.02 1.57 16 33 H 0.07 1.59 6.43 -2.38 -0.02 1.57 16 34 H 0.07 1.50 8.09 -2.38 -0.02 1.48 16 35 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 36 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.40 20.10 6.73 -92.71 -0.62 19.47 16 42 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -68.68 342.91 5.45 -63.23 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.37 Total: 33.93 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.37 Total: -24.06 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -1.27 Total: -81.82 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.05 Total: -36.98 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.68 5.45 -63.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112632927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.624 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds