Wall clock time and date at job start Mon Mar 30 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.94277 * 2 1 4 4 C 1.38143 * 120.05508 * 179.97438 * 3 2 1 5 5 C 1.38735 * 119.94626 * 359.97438 * 4 3 2 6 6 O 1.35899 * 120.05694 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99735 * 185.48941 * 6 5 4 8 8 C 1.53119 * 109.52221 * 274.98959 * 7 6 5 9 9 C 1.53039 * 109.27746 * 182.44178 * 8 7 6 10 10 N 1.46845 * 109.52233 * 59.18667 * 9 8 7 11 11 C 1.46901 * 110.99762 * 174.16480 * 10 9 8 12 12 C 1.50709 * 109.46703 * 294.20043 * 11 10 9 13 13 H 1.07996 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99652 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00296 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99661 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47239 * 119.99664 * 16 14 12 19 19 H 1.48497 * 109.47053 * 239.99883 * 16 14 12 20 20 C 1.46852 * 111.19408 * 298.25161 * 10 9 8 21 21 C 1.53036 * 109.52030 * 61.74627 * 20 10 9 22 22 C 1.38734 * 119.88480 * 0.25542 * 5 4 3 23 23 C 1.38150 * 119.94454 * 359.48958 * 22 5 4 24 24 H 1.09001 * 109.46805 * 89.99894 * 1 2 3 25 25 H 1.09004 * 109.46989 * 209.99416 * 1 2 3 26 26 H 1.08994 * 109.47334 * 330.00047 * 1 2 3 27 27 H 1.07997 * 119.96902 * 359.95888 * 3 2 1 28 28 H 1.08001 * 120.02905 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.52258 * 35.18262 * 7 6 5 30 30 H 1.09001 * 109.50988 * 302.38469 * 8 7 6 31 31 H 1.09008 * 109.50348 * 62.50366 * 8 7 6 32 32 H 1.08995 * 109.46417 * 299.16530 * 9 8 7 33 33 H 1.09007 * 109.44878 * 179.19496 * 9 8 7 34 34 H 1.08988 * 109.47725 * 54.20339 * 11 10 9 35 35 H 1.09006 * 109.46925 * 174.20924 * 11 10 9 36 36 H 0.96999 * 119.99962 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.46401 * 301.73029 * 20 10 9 38 38 H 1.08993 * 109.45200 * 181.75468 * 20 10 9 39 39 H 1.09006 * 109.50432 * 180.87631 * 21 20 10 40 40 H 1.08995 * 109.50383 * 60.76186 * 21 20 10 41 41 H 1.08002 * 120.02809 * 179.72413 * 22 5 4 42 42 H 1.08001 * 119.97007 * 180.24943 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0001 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2812 -1.2674 -0.1191 8 6 6.4017 -1.9143 1.2636 9 6 7.1510 -3.2426 1.1364 10 7 8.4847 -3.0015 0.5713 11 6 9.2836 -4.2343 0.5631 12 6 9.5613 -4.6623 1.9812 13 1 9.1818 -4.0773 2.8059 14 6 10.2997 -5.8007 2.2256 15 7 10.7613 -6.5133 1.2213 16 14 10.6432 -6.3316 3.9833 17 1 10.0176 -5.3669 4.9230 18 1 10.0756 -7.6847 4.2116 19 1 12.1100 -6.3649 4.2126 20 6 8.3940 -2.4243 -0.7760 21 6 7.6818 -1.0716 -0.7059 22 6 3.5786 -1.2007 -0.0032 23 6 2.1972 -1.1981 0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6557 2.1326 -0.0007 28 1 4.1172 2.1369 0.0001 29 1 5.6984 -1.9139 -0.7752 30 1 6.9507 -1.2491 1.9301 31 1 5.4060 -2.0954 1.6686 32 1 6.5943 -3.9123 0.4808 33 1 7.2508 -3.6987 2.1214 34 1 8.7329 -5.0208 0.0474 35 1 10.2265 -4.0527 0.0472 36 1 11.2812 -7.3139 1.3933 37 1 7.8316 -3.0978 -1.4226 38 1 9.3969 -2.2862 -1.1800 39 1 7.6009 -0.6505 -1.7081 40 1 8.2511 -0.3931 -0.0705 41 1 4.1173 -2.1368 -0.0069 42 1 1.6558 -2.1326 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116882746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:18 Heat of formation + Delta-G solvation = -22.467097 kcal Electronic energy + Delta-G solvation = -20950.172749 eV Core-core repulsion = 17894.724734 eV Total energy + Delta-G solvation = -3055.448015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41043 -38.52420 -37.02447 -33.35592 -32.19303 -31.40498 -30.95966 -30.43450 -27.09372 -26.24309 -24.07509 -22.84220 -22.56075 -21.49505 -20.85838 -19.41375 -18.14731 -16.39411 -16.18697 -15.55827 -15.23433 -14.88814 -14.54380 -14.30492 -14.23475 -13.83510 -13.69072 -13.50963 -13.25885 -12.77500 -12.63365 -12.29204 -12.07759 -11.85373 -11.66816 -11.58690 -11.30554 -11.10494 -10.86218 -10.77206 -10.63149 -10.39012 -10.33385 -9.94959 -9.81348 -9.19527 -9.08072 -8.46799 -8.04347 -7.30105 -6.05664 -4.07152 1.25764 1.35424 3.25216 3.29418 3.37030 3.41927 3.67126 4.40013 4.69683 4.74514 4.77324 4.87294 4.95613 5.04468 5.15088 5.21978 5.27795 5.30447 5.36539 5.41952 5.57918 5.62935 5.69956 5.75537 5.86432 5.92974 5.97190 6.07077 6.09497 6.21656 6.29718 6.34259 6.42137 6.50408 6.60254 6.63163 6.75925 7.25325 7.29860 7.51180 7.77040 8.04700 8.15060 8.50535 9.00837 9.57466 11.05267 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.003393 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.108289 B = 8250.948770 C = 8727.913957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.083 4.083 4 C -0.155 4.155 5 C 0.135 3.865 6 O -0.310 6.310 7 C 0.087 3.913 8 C -0.140 4.140 9 C 0.068 3.932 10 N -0.537 5.537 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.059 3.941 21 C -0.107 4.107 22 C -0.206 4.206 23 C -0.080 4.080 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.090 0.910 34 H -0.009 1.009 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.126 12.808 -4.335 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.174 4.174 5 C 0.089 3.911 6 O -0.224 6.224 7 C 0.031 3.969 8 C -0.178 4.178 9 C -0.060 4.060 10 N -0.262 5.262 11 C 0.068 3.932 12 C -0.546 4.546 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.070 4.070 21 C -0.145 4.145 22 C -0.225 4.225 23 C -0.098 4.098 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.009 0.991 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.628 13.132 -4.059 21.574 hybrid contribution -0.137 -1.280 0.351 1.334 sum -16.765 11.852 -3.707 20.864 Atomic orbital electron populations 1.20692 0.91303 1.02460 1.01929 1.19789 0.96057 0.93116 1.04560 1.20797 0.93004 0.97595 0.98693 1.20433 0.93737 0.96365 1.06837 1.19073 0.83021 0.93932 0.95072 1.86117 1.15650 1.33376 1.87269 1.22641 0.93752 0.82695 0.97790 1.22220 1.00552 0.98641 0.96380 1.21888 0.89082 0.93569 1.01491 1.62071 1.13395 1.32062 1.18716 1.19722 0.92065 0.83679 0.97739 1.21202 1.32990 1.08318 0.92138 0.91754 1.24994 0.95843 0.96466 0.97327 1.69965 1.36588 1.16730 1.30537 0.86448 0.78035 0.78347 0.84647 1.19619 1.21112 1.20977 1.21975 0.99818 0.93523 0.91716 1.21653 0.93039 0.99115 1.00721 1.21399 0.95288 0.97682 1.08105 1.20838 0.93343 0.97617 0.97968 0.91647 0.91826 0.91851 0.85707 0.85359 0.91492 0.90142 0.91804 0.96198 0.89167 0.99095 0.95025 0.92949 0.95877 0.90401 0.91476 0.90060 0.85064 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.13 -1.38 5.88 -104.60 -0.62 -2.00 16 3 C -0.08 -0.85 9.69 -39.60 -0.38 -1.23 16 4 C -0.16 -1.84 9.99 -39.43 -0.39 -2.24 16 5 C 0.13 1.84 6.60 -39.21 -0.26 1.58 16 6 O -0.31 -4.62 9.81 -19.42 -0.19 -4.81 16 7 C 0.09 1.29 2.17 -26.61 -0.06 1.23 16 8 C -0.14 -2.23 5.38 -26.65 -0.14 -2.37 16 9 C 0.07 1.30 5.29 -3.83 -0.02 1.28 16 10 N -0.54 -11.42 4.65 -236.11 -1.10 -12.52 16 11 C 0.19 4.96 4.72 -4.97 -0.02 4.94 16 12 C -0.51 -14.13 8.43 -34.44 -0.29 -14.42 16 13 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 21 C -0.11 -1.61 5.75 -26.65 -0.15 -1.76 16 22 C -0.21 -2.62 8.28 -39.43 -0.33 -2.95 16 23 C -0.08 -0.88 9.69 -39.60 -0.38 -1.27 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.07 0.95 6.31 -51.93 -0.33 0.63 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.93 6.91 -51.92 -0.36 0.57 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 1.87 6.70 -51.92 -0.35 1.53 16 34 H -0.01 -0.24 8.12 -51.94 -0.42 -0.66 16 35 H 0.03 0.87 7.99 -51.93 -0.41 0.45 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 1.35 8.01 -51.93 -0.42 0.94 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.13 1.65 5.41 -52.49 -0.28 1.37 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -29.93 335.48 -10.05 -39.98 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.72 Total: -1.22 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.81 Total: -17.18 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.36 Total: -38.32 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.19 Total: -4.81 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.93 -10.05 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116882746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds