Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.50696 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21294 * 120.00353 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.37091 * 120.00143 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99896 * 0.02562 * 14 13 11 16 16 C 1.38946 * 119.99867 * 180.02562 * 14 13 11 17 17 N 1.31407 * 120.00428 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99923 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47029 * 90.00045 * 18 16 14 20 20 H 1.48502 * 109.46709 * 209.99587 * 18 16 14 21 21 H 1.48493 * 109.46927 * 329.99790 * 18 16 14 22 22 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 23 23 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 32 32 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 33 33 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 34 34 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 35 35 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 36 36 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 37 37 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 38 38 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 39 39 H 0.97000 * 119.99126 * 0.02562 * 13 11 10 40 40 H 0.97001 * 120.00635 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.00544 * 179.97438 * 22 8 7 42 42 H 1.08001 * 120.00265 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6235 -8.4627 -2.2068 12 8 -0.0059 -8.8799 -1.2576 13 7 0.9668 -9.2980 -3.2074 14 6 0.6050 -10.6191 -3.1520 15 1 0.0445 -10.9906 -2.3067 16 6 0.9594 -11.4803 -4.1832 17 7 1.6408 -11.0283 -5.2118 18 14 0.4658 -13.2804 -4.1080 19 1 -0.8616 -13.4570 -4.7502 20 1 1.4753 -14.1007 -4.8245 21 1 0.3913 -13.7144 -2.6899 22 6 0.0702 -3.9140 -1.6725 23 6 0.4357 -2.5819 -1.7275 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6055 -0.2617 -2.1370 32 1 3.1264 -0.6442 -1.2952 33 1 3.4283 -2.7789 -0.1837 34 1 2.7728 -5.1500 -0.0768 35 1 0.9463 -6.7488 -0.1305 36 1 -0.5747 -6.3662 -0.9724 37 1 0.5870 -6.5510 -3.1552 38 1 2.1079 -6.9336 -2.3134 39 1 1.4705 -8.9644 -3.9663 40 1 1.8879 -11.6294 -5.9320 41 1 -0.8718 -4.2332 -2.0932 42 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120859944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = -53.987752 kcal Electronic energy + Delta-G solvation = -20053.377230 eV Core-core repulsion = 16996.562377 eV Total energy + Delta-G solvation = -3056.814853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68345 -38.18529 -36.58193 -34.11069 -33.29003 -31.22265 -30.86934 -30.10347 -27.40717 -26.83557 -24.92523 -23.03679 -22.62966 -20.75003 -20.07425 -19.02115 -17.79990 -16.40449 -15.87851 -15.60186 -14.92660 -14.83480 -14.56388 -14.41719 -14.18487 -13.96056 -13.54750 -13.32219 -12.90804 -12.54960 -12.47876 -12.39470 -12.13753 -11.93345 -11.61791 -11.44589 -11.28457 -11.13261 -11.03981 -10.93887 -10.83479 -10.59983 -10.43167 -10.38100 -10.19546 -9.50226 -8.82051 -8.53131 -8.22612 -7.95459 -6.40176 -3.81120 1.41905 1.49061 3.18648 3.27053 3.33189 3.80129 3.94320 4.19412 4.56125 4.60924 4.72583 4.88283 4.92569 5.07252 5.11867 5.24480 5.28535 5.34910 5.37455 5.42100 5.55588 5.60302 5.60741 5.65866 5.68956 5.71383 5.80343 5.84229 6.00538 6.05602 6.08458 6.13624 6.20523 6.38400 6.46225 6.55159 6.62960 6.65835 6.87043 7.11606 7.56442 8.07559 8.62540 9.18969 9.56883 10.08169 10.77501 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.053143 B = 0.002578 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.757921 B =10856.460913 C =10987.433530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.074 4.074 9 C -0.062 4.062 10 C -0.123 4.123 11 C 0.439 3.561 12 O -0.598 6.598 13 N -0.563 5.563 14 C -0.301 4.301 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.116 4.116 23 C -0.115 4.115 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.393 0.607 40 H 0.271 0.729 41 H 0.121 0.879 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 22.274 6.209 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.135 4.135 7 C -0.133 4.133 8 C -0.074 4.074 9 C -0.099 4.099 10 C -0.163 4.163 11 C 0.226 3.774 12 O -0.484 6.484 13 N -0.199 5.199 14 C -0.431 4.431 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.134 4.134 23 C -0.133 4.133 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.435 21.881 6.662 22.917 hybrid contribution 0.147 -0.753 -0.618 0.985 sum 1.582 21.127 6.045 22.032 Atomic orbital electron populations 1.21922 0.95155 1.02384 1.01341 1.21086 0.96186 0.95656 0.98083 1.21856 1.00883 0.96022 1.01717 1.20647 1.00901 0.91416 0.98174 1.19763 0.94968 0.95197 0.99310 1.20969 0.99358 0.93057 1.00136 1.21085 0.96385 0.95764 1.00081 1.20103 0.94290 0.96127 0.96920 1.20301 1.02082 0.89050 0.98495 1.21449 1.01746 0.94484 0.98666 1.19988 0.85236 0.87459 0.84741 1.90509 1.44986 1.78103 1.34836 1.41926 1.49237 1.08946 1.19765 1.19725 1.32940 0.83943 1.06445 0.87945 1.25274 0.96878 1.00590 0.95257 1.69613 1.38641 1.36708 1.09311 0.85861 0.78122 0.81765 0.78554 1.20400 1.20919 1.19421 1.21096 0.99855 0.92870 0.99590 1.20977 0.96274 0.95722 1.00314 0.91912 0.93025 0.92859 0.91151 0.92741 0.92747 0.92708 0.91219 0.91240 0.86531 0.86084 0.90500 0.90502 0.90505 0.90509 0.77365 0.91869 0.86085 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.76 37.16 0.33 -0.86 16 2 C -0.09 -0.71 2.91 -90.62 -0.26 -0.97 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.07 -0.62 4.84 -27.89 -0.14 -0.75 16 5 C -0.09 -0.99 4.71 -104.63 -0.49 -1.48 16 6 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 7 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 8 C -0.07 -1.04 5.13 -104.63 -0.54 -1.58 16 9 C -0.06 -1.01 4.63 -27.88 -0.13 -1.13 16 10 C -0.12 -2.22 5.68 -27.88 -0.16 -2.37 16 11 C 0.44 10.57 7.78 -10.98 -0.09 10.49 16 12 O -0.60 -16.43 15.56 5.54 0.09 -16.34 16 13 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 14 C -0.30 -8.54 9.68 -14.94 -0.14 -8.68 16 15 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 18 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 23 C -0.11 -1.29 7.96 -39.58 -0.32 -1.60 16 24 H 0.06 0.57 6.27 -51.93 -0.33 0.24 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.08 1.31 8.04 -51.92 -0.42 0.89 16 36 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -30.94 349.90 -8.75 -39.69 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.91 Total: 8.47 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.84 Total: -14.49 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.67 Total: -38.84 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.94 -8.75 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120859944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.302 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds