Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.50696 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21294 * 120.00353 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.37091 * 120.00143 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99896 * 0.02562 * 14 13 11 16 16 C 1.38946 * 119.99867 * 180.02562 * 14 13 11 17 17 N 1.31407 * 120.00428 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99923 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47029 * 90.00045 * 18 16 14 20 20 H 1.48502 * 109.46709 * 209.99587 * 18 16 14 21 21 H 1.48493 * 109.46927 * 329.99790 * 18 16 14 22 22 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 23 23 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 32 32 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 33 33 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 34 34 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 35 35 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 36 36 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 37 37 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 38 38 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 39 39 H 0.97000 * 119.99126 * 0.02562 * 13 11 10 40 40 H 0.97001 * 120.00635 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.00544 * 179.97438 * 22 8 7 42 42 H 1.08001 * 120.00265 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6235 -8.4627 -2.2068 12 8 -0.0059 -8.8799 -1.2576 13 7 0.9668 -9.2980 -3.2074 14 6 0.6050 -10.6191 -3.1520 15 1 0.0445 -10.9906 -2.3067 16 6 0.9594 -11.4803 -4.1832 17 7 1.6408 -11.0283 -5.2118 18 14 0.4658 -13.2804 -4.1080 19 1 -0.8616 -13.4570 -4.7502 20 1 1.4753 -14.1007 -4.8245 21 1 0.3913 -13.7144 -2.6899 22 6 0.0702 -3.9140 -1.6725 23 6 0.4357 -2.5819 -1.7275 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6055 -0.2617 -2.1370 32 1 3.1264 -0.6442 -1.2952 33 1 3.4283 -2.7789 -0.1837 34 1 2.7728 -5.1500 -0.0768 35 1 0.9463 -6.7488 -0.1305 36 1 -0.5747 -6.3662 -0.9724 37 1 0.5870 -6.5510 -3.1552 38 1 2.1079 -6.9336 -2.3134 39 1 1.4705 -8.9644 -3.9663 40 1 1.8879 -11.6294 -5.9320 41 1 -0.8718 -4.2332 -2.0932 42 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120859944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = -70.050179 kcal Electronic energy + Delta-G solvation = -20054.073749 eV Core-core repulsion = 16996.562377 eV Total energy + Delta-G solvation = -3057.511372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69331 -40.01434 -37.36896 -36.07010 -34.55410 -33.28225 -31.78542 -31.22871 -28.11379 -27.91906 -26.59030 -24.36211 -23.55048 -21.73544 -20.90728 -20.74499 -19.86568 -17.90765 -16.95863 -16.73707 -16.56492 -15.95383 -15.87459 -15.81251 -15.34401 -15.15393 -14.61357 -14.25258 -14.21526 -13.86685 -13.69877 -13.53039 -13.13195 -12.98851 -12.91642 -12.69100 -12.62734 -12.43752 -12.22166 -12.10235 -12.07442 -11.70787 -11.62276 -11.53865 -11.46032 -11.42954 -10.40983 -10.04593 -9.74340 -9.31718 -8.48613 -5.98237 0.46694 0.56595 1.36783 1.40437 1.53770 2.02396 2.28896 2.84980 3.18465 3.24341 3.85681 3.91457 4.04122 4.07590 4.13879 4.20837 4.24414 4.29257 4.43088 4.51841 4.61167 4.65570 4.80061 4.82155 4.84997 4.88580 4.99616 5.01398 5.10316 5.10573 5.17282 5.27033 5.28211 5.38328 5.39431 5.47067 5.51550 5.60166 5.79801 5.82774 5.97548 6.19097 6.56118 7.09204 7.53069 8.08002 8.68732 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.053143 B = 0.002578 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.757921 B =10856.460913 C =10987.433530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.121 4.121 7 C -0.125 4.125 8 C -0.092 4.092 9 C -0.051 4.051 10 C -0.109 4.109 11 C 0.436 3.564 12 O -0.637 6.637 13 N -0.573 5.573 14 C -0.338 4.338 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.920 5.920 18 Si 0.995 3.005 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.273 1.273 22 C -0.126 4.126 23 C -0.116 4.116 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.124 0.876 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 23.871 5.680 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.109 4.109 5 C -0.087 4.087 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.092 4.092 9 C -0.089 4.089 10 C -0.149 4.149 11 C 0.224 3.776 12 O -0.525 6.525 13 N -0.209 5.209 14 C -0.467 4.467 15 H 0.097 0.903 16 C -0.214 4.214 17 N -0.561 5.561 18 Si 0.818 3.182 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.144 4.144 23 C -0.134 4.134 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.092 23.502 6.119 24.375 hybrid contribution -0.049 -1.156 -0.429 1.234 sum 2.043 22.346 5.690 23.150 Atomic orbital electron populations 1.21922 0.95365 1.01585 1.01949 1.21060 0.95978 0.96401 0.97378 1.21827 1.01219 0.95001 1.02151 1.20694 1.01632 0.89747 0.98837 1.20092 0.94392 0.96447 0.97815 1.21226 1.00299 0.92435 0.99907 1.21206 0.96099 0.96782 1.00196 1.19875 0.95505 0.94634 0.99155 1.20125 1.01000 0.90793 0.97000 1.21403 1.02946 0.90140 1.00406 1.21034 0.83655 0.89530 0.83361 1.90476 1.46432 1.79439 1.36136 1.42016 1.49740 1.08672 1.20460 1.19709 1.34649 0.85600 1.06762 0.90274 1.26095 0.96273 1.04565 0.94449 1.69675 1.38566 1.38254 1.09583 0.84903 0.78321 0.76541 0.78415 1.19518 1.19402 1.19730 1.21218 0.99917 0.93538 0.99694 1.21204 0.96784 0.95321 1.00047 0.93345 0.92675 0.92085 0.91935 0.92435 0.92221 0.92190 0.90328 0.90254 0.84521 0.85807 0.91886 0.91867 0.88652 0.88668 0.76929 0.91209 0.85801 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.76 71.98 0.63 -1.44 16 2 C -0.09 -1.17 2.91 -10.79 -0.03 -1.20 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.07 -1.00 4.84 29.84 0.14 -0.85 16 5 C -0.09 -1.68 4.71 -19.87 -0.09 -1.77 16 6 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 7 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 8 C -0.09 -2.52 5.13 -19.87 -0.10 -2.62 16 9 C -0.05 -1.70 4.63 29.85 0.14 -1.56 16 10 C -0.11 -3.92 5.68 29.85 0.17 -3.75 16 11 C 0.44 21.46 7.78 87.65 0.68 22.15 16 12 O -0.64 -36.21 15.56 -3.07 -0.05 -36.26 16 13 N -0.57 -30.40 5.29 -306.98 -1.62 -32.02 16 14 C -0.34 -19.63 9.68 84.04 0.81 -18.82 16 15 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 16 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 17 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 18 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.13 -3.10 9.70 22.27 0.22 -2.88 16 23 C -0.12 -2.38 7.96 22.27 0.18 -2.20 16 24 H 0.05 0.80 6.27 -2.39 -0.01 0.79 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.98 8.09 -2.38 -0.02 0.97 16 32 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.12 2.90 8.06 -2.91 -0.02 2.87 16 35 H 0.06 2.22 8.04 -2.38 -0.02 2.20 16 36 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 37 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 40 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.12 2.89 8.06 -2.91 -0.02 2.86 16 42 H 0.14 2.23 8.04 -2.91 -0.02 2.21 16 Total: -1.00 -66.77 349.90 5.20 -61.56 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.26 Total: 32.67 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 4.31 Total: -21.22 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.34 Total: -82.22 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.05 Total: -36.26 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.77 5.20 -61.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120859944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.486 kcal (2) G-P(sol) polarization free energy of solvation -66.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds