Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.51024 * 2 1 4 4 C 1.38233 * 120.00147 * 269.73008 * 3 2 1 5 5 C 1.38226 * 119.99805 * 179.76615 * 4 3 2 6 6 C 1.38238 * 120.00037 * 0.49986 * 5 4 3 7 7 C 1.38230 * 120.00079 * 359.75165 * 6 5 4 8 8 C 1.38236 * 119.99999 * 0.02562 * 7 6 5 9 9 C 1.53105 * 109.50576 * 239.91322 * 2 1 3 10 10 N 1.47101 * 109.20776 * 296.87408 * 9 2 1 11 11 C 1.46901 * 110.98461 * 177.63008 * 10 9 2 12 12 C 1.52993 * 109.47499 * 57.60449 * 11 10 9 13 13 C 1.50696 * 109.47276 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00258 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00326 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99717 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47140 * 89.99841 * 17 15 13 19 19 H 1.48506 * 109.46958 * 209.99704 * 17 15 13 20 20 H 1.48496 * 109.47322 * 329.99520 * 17 15 13 21 21 C 1.47015 * 110.77891 * 301.40773 * 10 9 2 22 22 C 1.53104 * 109.25783 * 58.61804 * 21 10 9 23 23 O 1.43017 * 109.25804 * 303.15601 * 22 21 10 24 24 H 1.09002 * 109.47153 * 59.99731 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99921 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99578 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.00157 * 180.23401 * 5 4 3 29 29 H 1.08004 * 119.99590 * 179.72489 * 6 5 4 30 30 H 1.08004 * 119.99995 * 179.97438 * 7 6 5 31 31 H 1.07993 * 120.00192 * 179.97438 * 8 7 6 32 32 H 1.08998 * 109.50273 * 56.85149 * 9 2 1 33 33 H 1.08998 * 109.50453 * 176.98060 * 9 2 1 34 34 H 1.09003 * 109.47477 * 177.61250 * 11 10 9 35 35 H 1.09008 * 109.46572 * 297.60615 * 11 10 9 36 36 H 1.08998 * 109.47766 * 300.00533 * 12 11 10 37 37 H 1.09008 * 109.47073 * 60.00473 * 12 11 10 38 38 H 0.96992 * 120.00108 * 180.02562 * 16 15 13 39 39 H 1.09008 * 109.50693 * 298.68825 * 21 10 9 40 40 H 1.09003 * 109.51140 * 178.55475 * 21 10 9 41 41 H 1.09000 * 109.50861 * 183.21688 * 22 21 10 42 42 H 1.08999 * 109.50277 * 63.08418 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0333 1.4205 0.0000 4 6 2.2694 2.0701 -1.1971 5 6 2.7265 3.3746 -1.1970 6 6 2.9572 4.0261 0.0002 7 6 2.7260 3.3748 1.1972 8 6 2.2646 2.0717 1.1972 9 6 2.0412 -0.7235 -1.2487 10 7 1.6109 -2.1294 -1.2037 11 6 2.0335 -2.8480 -2.4133 12 6 3.5538 -2.7540 -2.5573 13 6 3.9873 -3.4917 -3.7979 14 1 3.2521 -3.9784 -4.4215 15 6 5.3227 -3.5443 -4.1374 16 7 5.7010 -4.1876 -5.2203 17 14 6.5943 -2.7018 -3.0593 18 1 7.0753 -3.6533 -2.0254 19 1 7.7388 -2.2605 -3.8965 20 1 5.9801 -1.5221 -2.3990 21 6 2.1184 -2.7917 0.0067 22 6 1.6065 -2.0466 1.2424 23 8 2.0075 -0.6759 1.1664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0936 1.5595 -2.1324 28 1 2.9074 3.8835 -2.1323 29 1 3.3186 5.0439 0.0001 30 1 2.9067 3.8837 2.1326 31 1 2.0843 1.5627 2.1324 32 1 1.6331 -0.2451 -2.1391 33 1 3.1298 -0.6769 -1.2763 34 1 1.7399 -3.8948 -2.3354 35 1 1.5575 -2.4011 -3.2862 36 1 3.8475 -1.7073 -2.6353 37 1 4.0298 -3.2009 -1.6844 38 1 6.6404 -4.2250 -5.4589 39 1 3.2084 -2.7781 -0.0008 40 1 1.7668 -3.8231 0.0320 41 1 2.0264 -2.4995 2.1405 42 1 0.5187 -2.1060 1.2784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121180052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -33.545331 kcal Electronic energy + Delta-G solvation = -21964.305206 eV Core-core repulsion = 18908.376803 eV Total energy + Delta-G solvation = -3055.928403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54480 -39.61414 -37.50641 -34.97072 -34.47882 -32.20178 -31.73803 -30.48970 -29.61320 -27.63053 -25.40919 -24.89391 -23.26825 -23.09460 -21.71563 -20.04699 -19.13049 -18.24329 -17.45070 -16.75950 -16.59630 -16.33545 -15.94366 -15.59815 -15.32827 -15.27039 -15.03588 -14.84075 -14.52858 -14.25104 -13.87767 -13.57786 -13.42397 -13.19623 -13.00678 -12.93580 -12.60980 -12.44797 -12.18784 -12.13653 -11.93665 -11.87463 -11.57861 -11.48720 -11.16199 -10.83185 -10.65637 -9.81478 -9.64154 -9.26033 -8.37397 -6.40693 0.40648 0.51039 1.24184 1.26762 1.37503 2.25869 2.64981 2.84656 2.96860 2.97283 3.69905 3.80882 3.95082 4.07360 4.11679 4.18424 4.21509 4.29907 4.31749 4.44732 4.53467 4.55621 4.62179 4.68117 4.71353 4.76654 4.82998 4.91856 4.94800 4.99240 5.11552 5.17162 5.29647 5.31776 5.32283 5.49188 5.57893 5.62127 5.65958 5.93614 6.02996 6.10913 6.23414 6.24804 6.67507 7.23946 8.79100 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.005721 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.755839 B = 4893.113965 C = 5773.534760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 C -0.088 4.088 4 C -0.130 4.130 5 C -0.127 4.127 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.108 4.108 9 C 0.032 3.968 10 N -0.525 5.525 11 C 0.076 3.924 12 C -0.035 4.035 13 C -0.527 4.527 14 H 0.041 0.959 15 C 0.014 3.986 16 N -0.945 5.945 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.261 1.261 21 C 0.007 3.993 22 C 0.066 3.934 23 O -0.388 6.388 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.023 0.977 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 14.621 15.674 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.123 3.877 3 C -0.089 4.089 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.141 4.141 7 C -0.144 4.144 8 C -0.126 4.126 9 C -0.096 4.096 10 N -0.248 5.248 11 C -0.051 4.051 12 C -0.074 4.074 13 C -0.566 4.566 14 H 0.059 0.941 15 C -0.184 4.184 16 N -0.585 5.585 17 Si 0.766 3.234 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.121 4.121 22 C -0.011 4.011 23 O -0.307 6.307 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.918 14.644 15.733 23.671 hybrid contribution 1.771 -0.396 -0.576 1.904 sum -8.147 14.248 15.156 22.341 Atomic orbital electron populations 1.22165 0.92560 1.03516 1.02730 1.20190 0.94650 0.88480 0.84336 1.19633 1.00881 0.93891 0.94462 1.21209 1.00142 0.95958 0.97449 1.21403 0.99224 0.94336 0.99571 1.21517 0.99400 1.01074 0.92134 1.21475 0.99104 0.94448 0.99364 1.21115 0.98730 0.95059 0.97662 1.22800 0.97706 0.89916 0.99189 1.62672 1.57921 1.01666 1.02548 1.21964 0.93380 0.98342 0.91441 1.20028 0.96330 0.95787 0.95230 1.21345 0.93116 1.33292 1.08840 0.94107 1.25858 1.00786 0.95552 0.96188 1.70035 1.17374 1.44336 1.26762 0.85795 0.78754 0.79774 0.79121 1.19253 1.20371 1.18573 1.22929 0.97835 1.00090 0.91230 1.22837 1.00674 0.80450 0.97092 1.87962 1.76178 1.24194 1.42366 0.91323 0.91456 0.90603 0.86100 0.84217 0.83502 0.83646 0.85356 0.89536 0.96120 0.91034 0.91425 0.96985 0.97203 0.92350 0.95892 0.88458 0.86415 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.15 71.98 0.59 -2.96 16 2 C 0.16 4.52 0.94 -11.50 -0.01 4.51 16 3 C -0.09 -2.37 4.85 -19.86 -0.10 -2.47 16 4 C -0.13 -3.36 9.14 22.27 0.20 -3.16 16 5 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 6 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 7 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 8 C -0.11 -2.59 9.35 22.27 0.21 -2.38 16 9 C 0.03 1.06 3.02 86.30 0.26 1.32 16 10 N -0.53 -17.41 4.30 -894.93 -3.85 -21.26 16 11 C 0.08 3.04 5.32 86.30 0.46 3.50 16 12 C -0.04 -1.69 3.33 29.84 0.10 -1.59 16 13 C -0.53 -30.71 9.66 25.60 0.25 -30.47 16 14 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 15 C 0.01 0.82 5.47 84.66 0.46 1.29 16 16 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 17 Si 0.94 46.08 27.47 68.60 1.88 47.96 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 21 C 0.01 0.23 5.33 86.32 0.46 0.69 16 22 C 0.07 1.59 6.61 72.02 0.48 2.06 16 23 O -0.39 -11.05 9.27 -148.98 -1.38 -12.43 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.77 6.12 -2.38 -0.01 1.75 16 27 H 0.12 3.14 6.25 -2.91 -0.02 3.12 16 28 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.13 2.95 7.49 -2.91 -0.02 2.92 16 32 H 0.09 2.74 6.71 -2.39 -0.02 2.72 16 33 H 0.02 0.81 6.41 -2.39 -0.02 0.79 16 34 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 35 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 36 H 0.01 0.59 5.48 -2.39 -0.01 0.58 16 37 H 0.01 0.47 6.04 -2.38 -0.01 0.46 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.02 0.81 6.59 -2.38 -0.02 0.79 16 40 H 0.10 2.64 8.12 -2.39 -0.02 2.62 16 41 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.08 1.61 6.49 -2.39 -0.02 1.60 16 Total: -1.00 -67.87 323.90 1.92 -65.95 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.94 Total: 15.69 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 4.03 Total: -36.63 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.55 Total: -80.54 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.38 Total: -12.43 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.88 Total: 47.96 kcal Total: -67.87 1.92 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121180052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.405 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds