Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.50537 * 2 1 4 4 C 1.38234 * 119.99631 * 89.64485 * 3 2 1 5 5 C 1.38241 * 119.99649 * 179.74448 * 4 3 2 6 6 C 1.38232 * 120.00054 * 0.54761 * 5 4 3 7 7 C 1.38240 * 119.99942 * 359.70419 * 6 5 4 8 8 C 1.38230 * 119.99955 * 269.91325 * 3 2 1 9 9 C 1.53100 * 109.50957 * 120.13032 * 2 1 3 10 10 N 1.47015 * 109.25574 * 63.08373 * 9 2 1 11 11 C 1.46899 * 111.00070 * 182.39394 * 10 9 2 12 12 C 1.52997 * 109.47254 * 302.41452 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.47017 * 110.74932 * 58.61986 * 10 9 2 22 22 C 1.53099 * 109.25894 * 301.37965 * 21 10 9 23 23 O 1.43014 * 109.25447 * 56.85457 * 22 21 10 24 24 H 1.09003 * 109.46913 * 180.08560 * 1 2 3 25 25 H 1.08994 * 109.46906 * 300.08376 * 1 2 3 26 26 H 1.09004 * 109.46774 * 60.08811 * 1 2 3 27 27 H 1.08004 * 120.00243 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.99996 * 180.26346 * 5 4 3 29 29 H 1.08000 * 120.00246 * 179.72282 * 6 5 4 30 30 H 1.07995 * 120.00457 * 180.02562 * 7 6 5 31 31 H 1.08004 * 120.00305 * 0.02562 * 8 3 2 32 32 H 1.08999 * 109.50407 * 303.15515 * 9 2 1 33 33 H 1.08998 * 109.50935 * 183.02220 * 9 2 1 34 34 H 1.09002 * 109.47043 * 62.41523 * 11 10 9 35 35 H 1.09001 * 109.47354 * 182.41585 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 38 38 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.50849 * 61.32009 * 21 10 9 40 40 H 1.09000 * 109.50819 * 181.44545 * 21 10 9 41 41 H 1.09002 * 109.50515 * 176.78090 * 22 21 10 42 42 H 1.08991 * 109.50720 * 296.87108 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0332 1.4206 0.0000 4 6 2.2570 2.0745 1.1972 5 6 2.7236 3.3758 1.1972 6 6 2.9556 4.0269 0.0001 7 6 2.7269 3.3746 -1.1971 8 6 2.2657 2.0714 -1.1971 9 6 2.0413 -0.7244 1.2481 10 7 1.6110 -2.1295 1.2036 11 6 2.0336 -2.8480 2.4132 12 6 3.5539 -2.7541 2.5572 13 6 3.9874 -3.4907 3.7984 14 1 3.2521 -3.9775 4.4219 15 6 5.3227 -3.5440 4.1375 16 7 6.2181 -2.9516 3.3779 17 14 5.8600 -4.4565 5.6764 18 1 4.6691 -5.0311 6.3522 19 1 6.7926 -5.5502 5.3031 20 1 6.5454 -3.5141 6.5967 21 6 2.1186 -2.7916 -0.0069 22 6 1.6066 -2.0464 -1.2424 23 8 2.0077 -0.6758 -1.1665 24 1 -0.3633 -1.0277 0.0015 25 1 -0.3633 0.5151 0.8892 26 1 -0.3633 0.5125 -0.8908 27 1 2.0708 1.5675 2.1325 28 1 2.9025 3.8852 2.1325 29 1 3.3159 5.0450 0.0001 30 1 2.9085 3.8831 -2.1324 31 1 2.0863 1.5621 -2.1325 32 1 1.6332 -0.2468 2.1389 33 1 3.1299 -0.6778 1.2757 34 1 1.5576 -2.4013 3.2861 35 1 1.7400 -3.8948 2.3352 36 1 4.0298 -3.2008 1.6843 37 1 3.8475 -1.7073 2.6352 38 1 7.1577 -2.9894 3.6162 39 1 3.2085 -2.7780 0.0006 40 1 1.7670 -3.8230 -0.0322 41 1 2.0266 -2.4993 -2.1406 42 1 0.5189 -2.1067 -1.2790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121180194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -17.959217 kcal Electronic energy + Delta-G solvation = -21847.973290 eV Core-core repulsion = 18792.720752 eV Total energy + Delta-G solvation = -3055.252539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29311 -38.48094 -35.92536 -33.33771 -32.88318 -30.82361 -29.92982 -29.37660 -28.05030 -25.87207 -23.97583 -23.53979 -22.16458 -21.81427 -20.29540 -18.69715 -17.22972 -16.49282 -16.14031 -15.60857 -15.07496 -14.68337 -14.57878 -14.33693 -14.12401 -14.01378 -13.37598 -13.31066 -12.96829 -12.57507 -12.44795 -12.21137 -12.01277 -11.89016 -11.34795 -11.26776 -11.03996 -10.95093 -10.92909 -10.74997 -10.64895 -10.15608 -9.85991 -9.74636 -9.37555 -9.14802 -8.80337 -8.59242 -8.38521 -7.58373 -6.04144 -4.07638 1.42675 1.52116 3.27985 3.35699 3.39600 3.76985 3.99248 4.35763 4.45619 4.87408 4.99632 5.09070 5.15145 5.21224 5.26388 5.31265 5.40644 5.54436 5.55334 5.65885 5.68131 5.75101 5.86334 5.94865 6.06305 6.14007 6.19404 6.22976 6.28724 6.33545 6.43731 6.57852 6.60162 6.61290 6.71929 6.85473 7.08971 7.38038 7.43143 7.47361 7.63759 7.77332 7.95656 8.37584 8.99677 9.56965 11.06865 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.004927 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.216281 B = 5681.709303 C = 6584.418767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 C -0.067 4.067 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.126 4.126 8 C -0.096 4.096 9 C 0.032 3.968 10 N -0.537 5.537 11 C 0.056 3.944 12 C -0.010 4.010 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.013 3.987 22 C 0.064 3.936 23 O -0.375 6.375 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.303 9.900 -9.112 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.120 3.880 3 C -0.067 4.067 4 C -0.126 4.126 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.144 4.144 8 C -0.114 4.114 9 C -0.097 4.097 10 N -0.260 5.260 11 C -0.070 4.070 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.116 4.116 22 C -0.013 4.013 23 O -0.294 6.294 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.538 10.000 -9.281 17.239 hybrid contribution 1.357 -0.685 1.136 1.897 sum -9.181 9.315 -8.145 15.408 Atomic orbital electron populations 1.22232 0.94314 1.03338 1.01825 1.20206 0.93382 0.88461 0.85993 1.19551 0.99534 0.93964 0.93685 1.21095 0.98927 0.94912 0.97706 1.21099 0.99750 0.94894 0.98114 1.21129 1.00567 0.99827 0.92722 1.21123 1.00336 0.95044 0.97940 1.20978 0.98219 0.94138 0.98049 1.22737 1.00088 0.89872 0.96962 1.62644 1.58563 1.01619 1.03216 1.22344 0.97883 0.97131 0.89673 1.19665 0.90255 0.97503 0.97354 1.21179 0.92367 1.33570 1.08781 0.92534 1.25029 0.96858 0.95589 0.96874 1.69985 1.01425 1.43777 1.38090 0.86541 0.78682 0.79614 0.83221 1.19669 1.21005 1.20988 1.22750 0.99696 0.98470 0.90638 1.22679 0.99291 0.81556 0.97745 1.87969 1.75715 1.23389 1.42320 0.90525 0.91780 0.92715 0.85556 0.86009 0.86385 0.86295 0.85604 0.90164 0.92414 0.91823 0.91833 0.96503 0.96302 0.93025 0.92886 0.90183 0.88929 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.15 37.16 0.30 -1.81 16 2 C 0.16 2.44 0.94 -91.72 -0.09 2.35 16 3 C -0.07 -0.99 4.84 -104.62 -0.51 -1.50 16 4 C -0.11 -1.53 9.15 -39.58 -0.36 -1.90 16 5 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 6 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 7 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 8 C -0.10 -1.31 9.35 -39.58 -0.37 -1.68 16 9 C 0.03 0.56 3.03 -3.71 -0.01 0.55 16 10 N -0.54 -9.62 4.30 -234.31 -1.01 -10.63 16 11 C 0.06 1.17 5.32 -3.83 -0.02 1.15 16 12 C -0.01 -0.25 4.26 -27.89 -0.12 -0.37 16 13 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.01 0.22 5.33 -3.71 -0.02 0.20 16 22 C 0.06 0.91 6.61 37.21 0.25 1.16 16 23 O -0.37 -6.03 9.27 -35.23 -0.33 -6.35 16 24 H 0.08 1.03 6.13 -51.93 -0.32 0.71 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.13 1.73 6.27 -52.48 -0.33 1.40 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.65 7.49 -52.48 -0.39 1.26 16 32 H 0.08 1.35 6.71 -51.93 -0.35 1.00 16 33 H 0.06 1.22 6.40 -51.93 -0.33 0.88 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.29 8.11 -51.93 -0.42 0.87 16 36 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 37 H 0.02 0.52 6.42 -51.93 -0.33 0.18 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.05 1.05 6.59 -51.93 -0.34 0.71 16 40 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -30.87 327.52 -9.65 -40.52 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.42 Total: 2.11 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.55 Total: -20.91 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.27 Total: -36.93 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.33 Total: -6.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.87 -9.65 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121180194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.561 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds