Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.50537 * 2 1 4 4 C 1.38234 * 119.99631 * 89.64485 * 3 2 1 5 5 C 1.38241 * 119.99649 * 179.74448 * 4 3 2 6 6 C 1.38232 * 120.00054 * 0.54761 * 5 4 3 7 7 C 1.38240 * 119.99942 * 359.70419 * 6 5 4 8 8 C 1.38230 * 119.99955 * 269.91325 * 3 2 1 9 9 C 1.53100 * 109.50957 * 120.13032 * 2 1 3 10 10 N 1.47015 * 109.25574 * 63.08373 * 9 2 1 11 11 C 1.46899 * 111.00070 * 182.39394 * 10 9 2 12 12 C 1.52997 * 109.47254 * 302.41452 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.47017 * 110.74932 * 58.61986 * 10 9 2 22 22 C 1.53099 * 109.25894 * 301.37965 * 21 10 9 23 23 O 1.43014 * 109.25447 * 56.85457 * 22 21 10 24 24 H 1.09003 * 109.46913 * 180.08560 * 1 2 3 25 25 H 1.08994 * 109.46906 * 300.08376 * 1 2 3 26 26 H 1.09004 * 109.46774 * 60.08811 * 1 2 3 27 27 H 1.08004 * 120.00243 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.99996 * 180.26346 * 5 4 3 29 29 H 1.08000 * 120.00246 * 179.72282 * 6 5 4 30 30 H 1.07995 * 120.00457 * 180.02562 * 7 6 5 31 31 H 1.08004 * 120.00305 * 0.02562 * 8 3 2 32 32 H 1.08999 * 109.50407 * 303.15515 * 9 2 1 33 33 H 1.08998 * 109.50935 * 183.02220 * 9 2 1 34 34 H 1.09002 * 109.47043 * 62.41523 * 11 10 9 35 35 H 1.09001 * 109.47354 * 182.41585 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 38 38 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.50849 * 61.32009 * 21 10 9 40 40 H 1.09000 * 109.50819 * 181.44545 * 21 10 9 41 41 H 1.09002 * 109.50515 * 176.78090 * 22 21 10 42 42 H 1.08991 * 109.50720 * 296.87108 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0332 1.4206 0.0000 4 6 2.2570 2.0745 1.1972 5 6 2.7236 3.3758 1.1972 6 6 2.9556 4.0269 0.0001 7 6 2.7269 3.3746 -1.1971 8 6 2.2657 2.0714 -1.1971 9 6 2.0413 -0.7244 1.2481 10 7 1.6110 -2.1295 1.2036 11 6 2.0336 -2.8480 2.4132 12 6 3.5539 -2.7541 2.5572 13 6 3.9874 -3.4907 3.7984 14 1 3.2521 -3.9775 4.4219 15 6 5.3227 -3.5440 4.1375 16 7 6.2181 -2.9516 3.3779 17 14 5.8600 -4.4565 5.6764 18 1 4.6691 -5.0311 6.3522 19 1 6.7926 -5.5502 5.3031 20 1 6.5454 -3.5141 6.5967 21 6 2.1186 -2.7916 -0.0069 22 6 1.6066 -2.0464 -1.2424 23 8 2.0077 -0.6758 -1.1665 24 1 -0.3633 -1.0277 0.0015 25 1 -0.3633 0.5151 0.8892 26 1 -0.3633 0.5125 -0.8908 27 1 2.0708 1.5675 2.1325 28 1 2.9025 3.8852 2.1325 29 1 3.3159 5.0450 0.0001 30 1 2.9085 3.8831 -2.1324 31 1 2.0863 1.5621 -2.1325 32 1 1.6332 -0.2468 2.1389 33 1 3.1299 -0.6778 1.2757 34 1 1.5576 -2.4013 3.2861 35 1 1.7400 -3.8948 2.3352 36 1 4.0298 -3.2008 1.6843 37 1 3.8475 -1.7073 2.6352 38 1 7.1577 -2.9894 3.6162 39 1 3.2085 -2.7780 0.0006 40 1 1.7670 -3.8230 -0.0322 41 1 2.0266 -2.4993 -2.1406 42 1 0.5189 -2.1067 -1.2790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121180194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = -36.478706 kcal Electronic energy + Delta-G solvation = -21848.776356 eV Core-core repulsion = 18792.720752 eV Total energy + Delta-G solvation = -3056.055604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52605 -39.59680 -37.45551 -34.99405 -34.47026 -31.93705 -31.60996 -30.47747 -29.47438 -27.49456 -25.54499 -24.96862 -23.36787 -23.12468 -21.72843 -20.06614 -18.70641 -18.21949 -17.42957 -16.75288 -16.65630 -16.29814 -15.94836 -15.67909 -15.36608 -15.26518 -14.73975 -14.72741 -14.28791 -14.23095 -13.83642 -13.54474 -13.23213 -13.15534 -12.98706 -12.89504 -12.61353 -12.56418 -12.18648 -12.12401 -11.96460 -11.87939 -11.59911 -11.38061 -11.11237 -10.64799 -10.60052 -9.80633 -9.62939 -9.23073 -8.24894 -6.37930 0.41643 0.51719 1.36822 1.36851 1.50743 2.36408 2.65741 2.87474 2.99409 3.07906 3.71490 3.81949 3.96797 4.08006 4.14080 4.19730 4.22916 4.30810 4.33603 4.49667 4.52643 4.62975 4.69180 4.70196 4.72138 4.83978 4.89517 4.92711 4.97593 5.03541 5.12780 5.17808 5.31707 5.42260 5.48436 5.57820 5.62366 5.67012 5.67735 5.91593 6.05095 6.11765 6.24678 6.25735 6.80145 7.32293 8.86595 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.004927 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.216281 B = 5681.709303 C = 6584.418767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 C -0.088 4.088 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.109 4.109 9 C 0.038 3.962 10 N -0.522 5.522 11 C 0.070 3.930 12 C 0.002 3.998 13 C -0.541 4.541 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.258 1.258 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.011 3.989 22 C 0.067 3.933 23 O -0.389 6.389 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.012 0.988 34 H 0.068 0.932 35 H 0.072 0.928 36 H -0.014 1.014 37 H -0.012 1.012 38 H 0.263 0.737 39 H 0.013 0.987 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 10.385 -9.233 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.123 3.877 3 C -0.089 4.089 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.141 4.141 7 C -0.144 4.144 8 C -0.127 4.127 9 C -0.090 4.090 10 N -0.245 5.245 11 C -0.058 4.058 12 C -0.036 4.036 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.182 1.182 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.117 4.117 22 C -0.009 4.009 23 O -0.308 6.308 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.102 0.898 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.005 0.995 37 H 0.007 0.993 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.774 10.485 -9.410 18.360 hybrid contribution 1.779 -0.785 1.137 2.252 sum -9.994 9.700 -8.273 16.200 Atomic orbital electron populations 1.22157 0.92309 1.03556 1.02802 1.20205 0.94764 0.88459 0.84230 1.19642 1.00902 0.93836 0.94511 1.21190 1.00197 0.95990 0.97355 1.21404 0.99151 0.94350 0.99633 1.21520 0.99420 1.01099 0.92077 1.21482 0.99060 0.94394 0.99417 1.21120 0.98824 0.95119 0.97618 1.22694 0.97278 0.90046 0.99019 1.62697 1.57551 1.01632 1.02641 1.22126 0.94157 0.98141 0.91364 1.19501 0.93636 0.94967 0.95494 1.21643 0.92985 1.33714 1.09582 0.91692 1.26018 0.96943 0.96400 1.00431 1.70136 1.01871 1.45302 1.40264 0.85365 0.78560 0.78192 0.78751 1.18162 1.20428 1.20437 1.22862 0.97378 0.99992 0.91511 1.22824 1.00680 0.80465 0.96957 1.87957 1.76308 1.24185 1.42394 0.90551 0.91231 0.91322 0.86339 0.84183 0.83343 0.83508 0.85365 0.89813 0.96978 0.91306 0.90963 0.99535 0.99343 0.92851 0.96852 0.88568 0.86620 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.15 71.98 0.59 -3.21 16 2 C 0.16 5.02 0.94 -11.50 -0.01 5.01 16 3 C -0.09 -2.65 4.84 -19.87 -0.10 -2.74 16 4 C -0.13 -3.74 9.15 22.27 0.20 -3.53 16 5 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 6 C -0.12 -2.62 10.05 22.27 0.22 -2.39 16 7 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 8 C -0.11 -2.90 9.35 22.27 0.21 -2.70 16 9 C 0.04 1.41 3.03 86.31 0.26 1.67 16 10 N -0.52 -19.04 4.30 -895.21 -3.85 -22.89 16 11 C 0.07 2.95 5.32 86.30 0.46 3.41 16 12 C 0.00 0.12 4.26 29.85 0.13 0.25 16 13 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 14 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 17 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.01 0.38 5.33 86.31 0.46 0.84 16 22 C 0.07 1.84 6.61 72.02 0.48 2.31 16 23 O -0.39 -12.45 9.27 -148.98 -1.38 -13.83 16 24 H 0.08 1.91 6.13 -2.39 -0.01 1.89 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.12 3.46 6.27 -2.91 -0.02 3.44 16 28 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.13 3.27 7.49 -2.91 -0.02 3.25 16 32 H 0.08 2.96 6.71 -2.39 -0.02 2.94 16 33 H 0.01 0.55 6.40 -2.39 -0.02 0.53 16 34 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.07 2.93 8.11 -2.39 -0.02 2.91 16 36 H -0.01 -0.81 6.61 -2.39 -0.02 -0.83 16 37 H -0.01 -0.70 6.42 -2.39 -0.02 -0.71 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.01 0.56 6.59 -2.39 -0.02 0.54 16 40 H 0.10 2.95 8.12 -2.39 -0.02 2.93 16 41 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.08 1.86 6.50 -2.39 -0.02 1.84 16 Total: -1.00 -68.74 327.52 2.11 -66.62 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.99 Total: 18.45 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.04 Total: -36.92 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.57 Total: -81.04 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.38 Total: -13.83 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.74 2.11 -66.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121180194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.143 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds