Wall clock time and date at job start Mon Mar 30 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50700 * 120.00260 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46908 * 340.00165 * 7 6 5 9 9 N 1.46499 * 109.47322 * 220.00057 * 7 6 5 10 10 C 1.34771 * 120.00502 * 155.00085 * 9 7 6 11 11 O 1.21694 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.46370 * 120.00496 * 179.97438 * 10 9 7 13 13 H 1.08003 * 119.99697 * 359.97438 * 12 10 9 14 14 C 1.40051 * 120.00024 * 179.97438 * 12 10 9 15 15 N 1.30667 * 119.99999 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99776 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47177 * 60.00268 * 16 14 12 18 18 H 1.48508 * 109.46960 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47618 * 300.00084 * 16 14 12 20 20 C 1.53002 * 109.47141 * 99.99929 * 7 6 5 21 21 C 1.52997 * 109.47134 * 300.00397 * 20 7 6 22 22 C 1.53003 * 109.46847 * 60.00147 * 20 7 6 23 23 C 1.38238 * 119.99693 * 0.02562 * 6 5 4 24 24 C 1.38234 * 120.00063 * 359.97438 * 23 6 5 25 25 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 26 26 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 28 28 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 29 29 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 30 30 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 32 32 H 0.97008 * 119.99793 * 335.00027 * 9 7 6 33 33 H 0.97002 * 120.00158 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47519 * 179.97438 * 20 7 6 35 35 H 1.09001 * 109.46998 * 299.99512 * 21 20 7 36 36 H 1.08996 * 109.47620 * 59.99834 * 21 20 7 37 37 H 1.08995 * 109.47471 * 180.02562 * 21 20 7 38 38 H 1.08996 * 109.47537 * 60.00115 * 22 20 7 39 39 H 1.09004 * 109.46508 * 180.02562 * 22 20 7 40 40 H 1.09005 * 109.47333 * 299.99751 * 22 20 7 41 41 H 1.08002 * 119.99673 * 179.97438 * 23 6 5 42 42 H 1.08000 * 120.00005 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4674 5.4442 -0.0001 8 1 3.2606 5.9041 0.9662 9 7 2.7941 6.2038 -1.0565 10 6 2.6791 7.5428 -0.9551 11 8 3.1349 8.1209 0.0139 12 6 2.0070 8.3017 -2.0108 13 1 1.6035 7.7888 -2.8714 14 6 1.8870 9.6931 -1.9051 15 7 2.3747 10.3136 -0.8637 16 14 1.0298 10.6617 -3.2528 17 1 -0.3719 10.1899 -3.3864 18 1 1.0346 12.1053 -2.9044 19 1 1.7447 10.4600 -4.5387 20 6 4.9763 5.4459 -0.2532 21 6 5.6794 4.6526 0.8500 22 6 5.2665 4.8004 -1.6097 23 6 2.7236 3.3756 -1.1972 24 6 2.2574 2.0743 -1.1972 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 2.0829 1.5633 2.1325 31 1 2.9131 3.8814 2.1324 32 1 2.4311 5.7430 -1.8291 33 1 2.2920 11.2773 -0.7906 34 1 5.3435 6.4722 -0.2537 35 1 5.4726 5.1126 1.8164 36 1 5.3122 3.6264 0.8501 37 1 6.7544 4.6542 0.6700 38 1 4.7657 5.3655 -2.3957 39 1 6.3416 4.8012 -1.7898 40 1 4.8993 3.7740 -1.6097 41 1 2.9035 3.8848 -2.1325 42 1 2.0726 1.5668 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121547435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:28 Heat of formation + Delta-G solvation = -40.010207 kcal Electronic energy + Delta-G solvation = -21458.464234 eV Core-core repulsion = 18402.255493 eV Total energy + Delta-G solvation = -3056.208741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85150 -37.63186 -35.70623 -33.54223 -32.54145 -31.71954 -30.79834 -29.30711 -26.79102 -26.68652 -24.97032 -23.12381 -22.46642 -20.66006 -20.11881 -18.68827 -17.47822 -15.89534 -15.55367 -15.19012 -15.10243 -14.84028 -14.13035 -13.94565 -13.72758 -13.53732 -13.44803 -13.13164 -12.75537 -12.44260 -12.09188 -12.03971 -11.78487 -11.68523 -11.51782 -11.27821 -11.13459 -11.02309 -10.90266 -10.68078 -10.53341 -10.43346 -10.37249 -10.20636 -9.93708 -8.82867 -8.68331 -8.30258 -7.57260 -7.45795 -6.16086 -4.61664 1.53818 1.60582 3.16973 3.21871 3.23627 3.92924 4.12949 4.61081 4.75943 4.83225 4.88377 5.13941 5.18783 5.20562 5.27971 5.43684 5.47631 5.55056 5.64307 5.65923 5.71259 5.78897 5.88137 5.93997 6.00193 6.06409 6.10526 6.21858 6.22854 6.24253 6.34995 6.48064 6.55098 6.63141 6.73068 6.75239 6.93035 6.97222 7.21763 7.45223 7.95300 8.13696 8.35538 9.04806 9.56485 10.62682 10.81667 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.004622 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.324020 B = 6056.085481 C = 6783.112097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.095 4.095 4 C -0.119 4.119 5 C -0.109 4.109 6 C -0.069 4.069 7 C 0.197 3.803 8 H 0.082 0.918 9 N -0.758 5.758 10 C 0.557 3.443 11 O -0.579 6.579 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.089 3.911 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.108 4.108 24 C -0.119 4.119 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -17.794 0.273 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.137 4.137 5 C -0.128 4.128 6 C -0.070 4.070 7 C 0.091 3.909 8 H 0.100 0.900 9 N -0.412 5.412 10 C 0.361 3.639 11 O -0.462 6.462 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.121 4.121 21 C -0.201 4.201 22 C -0.204 4.204 23 C -0.126 4.126 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.211 0.789 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.770 -17.159 1.096 17.212 hybrid contribution -0.590 0.319 -1.057 1.252 sum 0.180 -16.840 0.039 16.841 Atomic orbital electron populations 1.21754 0.94954 1.01317 1.02389 1.20490 0.96028 0.93005 1.02359 1.19787 1.00354 0.96049 0.93323 1.20913 1.00652 0.94930 0.97220 1.21016 0.99354 0.94698 0.97713 1.20173 0.97377 0.96350 0.93098 1.19453 0.90601 0.86399 0.94457 0.90017 1.46250 1.63524 1.08290 1.23180 1.18181 0.79555 0.78924 0.87244 1.90596 1.52781 1.68466 1.34384 1.20841 1.39368 0.91803 1.06277 0.91621 1.25678 0.93902 0.97939 0.95555 1.70007 1.34490 1.09182 1.25989 0.86468 0.80328 0.78518 0.81622 1.19332 1.20590 1.19320 1.21451 0.95545 1.00384 0.94766 1.21822 0.99601 0.99975 0.98693 1.21930 1.00377 1.00437 0.97622 1.21033 0.98958 0.94526 0.98066 1.20942 1.00510 0.95022 0.97237 0.92498 0.92733 0.92565 0.91374 0.91415 0.86593 0.86183 0.78898 0.92118 0.90179 0.92905 0.92856 0.93304 0.92215 0.93733 0.92690 0.85860 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.08 -0.75 6.06 -27.89 -0.17 -0.92 16 3 C -0.10 -1.14 5.13 -104.63 -0.54 -1.67 16 4 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 5 C -0.11 -1.58 8.71 -39.58 -0.34 -1.92 16 6 C -0.07 -1.11 3.80 -104.62 -0.40 -1.50 16 7 C 0.20 3.80 2.08 -69.08 -0.14 3.66 16 8 H 0.08 1.80 7.44 -51.93 -0.39 1.41 16 9 N -0.76 -16.80 4.26 -56.35 -0.24 -17.04 16 10 C 0.56 15.68 7.71 -12.99 -0.10 15.58 16 11 O -0.58 -18.51 14.68 5.19 0.08 -18.43 16 12 C -0.55 -15.40 9.54 -35.63 -0.34 -15.74 16 13 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 14 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 15 N -0.77 -23.05 11.83 55.55 0.66 -22.39 16 16 Si 0.91 20.24 29.56 -169.99 -5.02 15.21 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 20 C -0.10 -1.80 2.90 -90.62 -0.26 -2.07 16 21 C -0.14 -2.12 8.79 37.16 0.33 -1.80 16 22 C -0.15 -2.30 7.96 37.16 0.30 -2.00 16 23 C -0.11 -1.56 6.84 -39.58 -0.27 -1.83 16 24 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 32 H 0.38 7.56 6.85 -40.82 -0.28 7.28 16 33 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 34 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.74 6.64 -51.93 -0.34 0.40 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.00 7.60 -51.93 -0.39 0.61 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.79 5.60 -51.93 -0.29 0.49 16 41 H 0.12 1.74 6.09 -52.49 -0.32 1.42 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -32.90 339.64 -8.48 -41.38 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.63 Total: 8.68 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.44 Total: -12.52 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.42 Total: -39.44 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.08 Total: -18.43 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.90 -8.48 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121547435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.367 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds