Wall clock time and date at job start Mon Mar 30 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50700 * 120.00260 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46908 * 340.00165 * 7 6 5 9 9 N 1.46499 * 109.47322 * 220.00057 * 7 6 5 10 10 C 1.34771 * 120.00502 * 155.00085 * 9 7 6 11 11 O 1.21694 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.46370 * 120.00496 * 179.97438 * 10 9 7 13 13 H 1.08003 * 119.99697 * 359.97438 * 12 10 9 14 14 C 1.40051 * 120.00024 * 179.97438 * 12 10 9 15 15 N 1.30667 * 119.99999 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99776 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47177 * 60.00268 * 16 14 12 18 18 H 1.48508 * 109.46960 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47618 * 300.00084 * 16 14 12 20 20 C 1.53002 * 109.47141 * 99.99929 * 7 6 5 21 21 C 1.52997 * 109.47134 * 300.00397 * 20 7 6 22 22 C 1.53003 * 109.46847 * 60.00147 * 20 7 6 23 23 C 1.38238 * 119.99693 * 0.02562 * 6 5 4 24 24 C 1.38234 * 120.00063 * 359.97438 * 23 6 5 25 25 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 26 26 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 28 28 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 29 29 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 30 30 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 32 32 H 0.97008 * 119.99793 * 335.00027 * 9 7 6 33 33 H 0.97002 * 120.00158 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47519 * 179.97438 * 20 7 6 35 35 H 1.09001 * 109.46998 * 299.99512 * 21 20 7 36 36 H 1.08996 * 109.47620 * 59.99834 * 21 20 7 37 37 H 1.08995 * 109.47471 * 180.02562 * 21 20 7 38 38 H 1.08996 * 109.47537 * 60.00115 * 22 20 7 39 39 H 1.09004 * 109.46508 * 180.02562 * 22 20 7 40 40 H 1.09005 * 109.47333 * 299.99751 * 22 20 7 41 41 H 1.08002 * 119.99673 * 179.97438 * 23 6 5 42 42 H 1.08000 * 120.00005 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4674 5.4442 -0.0001 8 1 3.2606 5.9041 0.9662 9 7 2.7941 6.2038 -1.0565 10 6 2.6791 7.5428 -0.9551 11 8 3.1349 8.1209 0.0139 12 6 2.0070 8.3017 -2.0108 13 1 1.6035 7.7888 -2.8714 14 6 1.8870 9.6931 -1.9051 15 7 2.3747 10.3136 -0.8637 16 14 1.0298 10.6617 -3.2528 17 1 -0.3719 10.1899 -3.3864 18 1 1.0346 12.1053 -2.9044 19 1 1.7447 10.4600 -4.5387 20 6 4.9763 5.4459 -0.2532 21 6 5.6794 4.6526 0.8500 22 6 5.2665 4.8004 -1.6097 23 6 2.7236 3.3756 -1.1972 24 6 2.2574 2.0743 -1.1972 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 2.0829 1.5633 2.1325 31 1 2.9131 3.8814 2.1324 32 1 2.4311 5.7430 -1.8291 33 1 2.2920 11.2773 -0.7906 34 1 5.3435 6.4722 -0.2537 35 1 5.4726 5.1126 1.8164 36 1 5.3122 3.6264 0.8501 37 1 6.7544 4.6542 0.6700 38 1 4.7657 5.3655 -2.3957 39 1 6.3416 4.8012 -1.7898 40 1 4.8993 3.7740 -1.6097 41 1 2.9035 3.8848 -2.1325 42 1 2.0726 1.5668 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121547435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:27 Heat of formation + Delta-G solvation = -59.577075 kcal Electronic energy + Delta-G solvation = -21459.312717 eV Core-core repulsion = 18402.255493 eV Total energy + Delta-G solvation = -3057.057224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11883 -39.30453 -37.37649 -34.68383 -34.47291 -33.58726 -31.87643 -30.47586 -28.59713 -28.06225 -26.47479 -24.12807 -23.59437 -22.01366 -21.64799 -20.23465 -19.40903 -17.57863 -17.17082 -16.54193 -16.34359 -16.07503 -15.73593 -15.46122 -15.14239 -14.55553 -14.44628 -14.27775 -14.13579 -14.03651 -13.84202 -13.35322 -13.03720 -12.91326 -12.77591 -12.73213 -12.64438 -12.57746 -12.15864 -12.04425 -11.97415 -11.87641 -11.81427 -11.58176 -11.30725 -10.91613 -9.87025 -9.74600 -9.46369 -9.30696 -8.27908 -6.84819 0.44676 0.54561 1.38897 1.42615 1.53935 2.24427 2.48690 2.84035 3.17557 3.62244 3.74217 3.94761 3.99622 4.05759 4.19603 4.20408 4.32050 4.36243 4.57249 4.61047 4.63224 4.75393 4.77678 4.80049 4.88829 4.98604 5.04193 5.10074 5.13103 5.14048 5.23389 5.26458 5.31348 5.42022 5.42828 5.45707 5.57666 5.74134 5.77322 5.89718 6.15729 6.24042 6.33113 6.87354 7.56455 8.51437 8.69030 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.004622 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.324020 B = 6056.085481 C = 6783.112097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.088 4.088 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.087 4.087 7 C 0.200 3.800 8 H 0.041 0.959 9 N -0.744 5.744 10 C 0.541 3.459 11 O -0.630 6.630 12 C -0.575 4.575 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 0.996 3.004 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.254 1.254 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.117 0.883 32 H 0.391 0.609 33 H 0.274 0.726 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 -20.587 -1.370 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.136 4.136 5 C -0.139 4.139 6 C -0.088 4.088 7 C 0.095 3.905 8 H 0.059 0.941 9 N -0.398 5.398 10 C 0.346 3.654 11 O -0.517 6.517 12 C -0.612 4.612 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.451 5.451 16 Si 0.815 3.185 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.178 1.178 20 C -0.121 4.121 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.133 4.133 24 C -0.135 4.135 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.146 -20.020 -0.562 20.029 hybrid contribution -0.317 1.066 -0.484 1.212 sum -0.463 -18.955 -1.045 18.989 Atomic orbital electron populations 1.21751 0.94590 1.02350 1.01692 1.20561 0.96168 0.91090 1.03856 1.20191 0.98551 0.97389 0.92697 1.21183 0.99617 0.93991 0.98773 1.21090 0.99933 0.95776 0.97064 1.19828 0.99976 0.94341 0.94666 1.19429 0.91609 0.88097 0.91397 0.94062 1.45912 1.62859 1.06883 1.24143 1.18544 0.79307 0.80759 0.86834 1.90548 1.54824 1.70141 1.36178 1.21391 1.39867 0.92969 1.06954 0.89723 1.26939 0.94159 0.99001 0.98381 1.70185 1.36206 1.09868 1.28862 0.85103 0.79203 0.76472 0.77698 1.17922 1.19904 1.17792 1.21365 0.94670 0.98469 0.97551 1.21730 1.00266 1.00028 0.97013 1.21845 1.01289 1.00892 0.95335 1.21060 0.99533 0.95514 0.97224 1.21223 0.99444 0.94123 0.98748 0.93185 0.90905 0.93313 0.89895 0.90007 0.84214 0.86489 0.77498 0.91658 0.95012 0.93669 0.91261 0.91594 0.93875 0.92198 0.90667 0.85947 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.08 -1.14 6.06 29.84 0.18 -0.96 16 3 C -0.09 -1.83 5.13 -19.87 -0.10 -1.93 16 4 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 5 C -0.12 -3.41 8.71 22.27 0.19 -3.22 16 6 C -0.09 -2.80 3.80 -19.86 -0.08 -2.87 16 7 C 0.20 8.17 2.08 44.25 0.09 8.26 16 8 H 0.04 1.99 7.44 -2.39 -0.02 1.97 16 9 N -0.74 -34.65 4.26 -450.41 -1.92 -36.57 16 10 C 0.54 32.17 7.71 86.36 0.67 32.83 16 11 O -0.63 -43.07 14.68 -4.33 -0.06 -43.13 16 12 C -0.58 -33.33 9.54 24.83 0.24 -33.09 16 13 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 14 C 0.03 1.72 5.50 85.31 0.47 2.19 16 15 N -0.82 -51.30 11.83 21.84 0.26 -51.04 16 16 Si 1.00 41.72 29.56 68.60 2.03 43.75 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 20 C -0.10 -3.75 2.90 -10.79 -0.03 -3.78 16 21 C -0.13 -3.97 8.79 71.98 0.63 -3.34 16 22 C -0.14 -4.27 7.96 71.98 0.57 -3.70 16 23 C -0.12 -3.18 6.84 22.27 0.15 -3.02 16 24 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 29 H 0.08 0.99 8.09 -2.39 -0.02 0.98 16 30 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.12 3.29 8.04 -2.91 -0.02 3.27 16 32 H 0.39 16.04 6.85 -92.70 -0.63 15.41 16 33 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.86 6.64 -2.39 -0.02 1.84 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.47 7.60 -2.39 -0.02 1.45 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.07 2.05 5.60 -2.38 -0.01 2.03 16 41 H 0.12 3.33 6.09 -2.91 -0.02 3.31 16 42 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -75.99 339.64 4.80 -71.19 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.37 Total: 34.68 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.13 Total: -18.87 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -1.66 Total: -87.61 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.06 Total: -43.13 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -75.99 4.80 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121547435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.612 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds