Wall clock time and date at job start Mon Mar 30 2020 02:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47173 * 2 1 4 4 C 1.38234 * 120.00156 * 269.72911 * 3 2 1 5 5 C 1.38232 * 120.00285 * 179.78693 * 4 3 2 6 6 C 1.38244 * 119.99575 * 0.47003 * 5 4 3 7 7 C 1.50693 * 119.99826 * 179.78948 * 6 5 4 8 8 H 1.09003 * 109.47474 * 199.97543 * 7 6 5 9 9 N 1.46503 * 109.47479 * 319.97375 * 7 6 5 10 10 C 1.34776 * 120.00521 * 205.00253 * 9 7 6 11 11 O 1.21692 * 119.99582 * 359.97438 * 10 9 7 12 12 C 1.46373 * 120.00116 * 180.02562 * 10 9 7 13 13 H 1.07997 * 120.00058 * 353.94646 * 12 10 9 14 14 C 1.40047 * 119.99607 * 173.95216 * 12 10 9 15 15 N 1.30667 * 120.00398 * 6.14970 * 14 12 10 16 16 Si 1.86804 * 119.99724 * 186.15519 * 14 12 10 17 17 H 1.48498 * 109.47263 * 94.98161 * 16 14 12 18 18 H 1.48500 * 109.47172 * 214.98461 * 16 14 12 19 19 H 1.48502 * 109.46815 * 334.98156 * 16 14 12 20 20 C 1.53003 * 109.47575 * 79.97487 * 7 6 5 21 21 C 1.53002 * 109.47509 * 179.97438 * 20 7 6 22 22 C 1.52999 * 109.47019 * 299.99971 * 20 7 6 23 23 C 1.38230 * 119.99843 * 359.76454 * 6 5 4 24 24 C 1.38228 * 119.99919 * 90.00662 * 3 2 1 25 25 H 1.08999 * 109.47127 * 59.99329 * 1 2 3 26 26 H 1.09006 * 109.46556 * 299.99778 * 1 2 3 27 27 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47584 * 120.00394 * 2 1 3 29 29 H 1.09006 * 109.47009 * 240.00505 * 2 1 3 30 30 H 1.08003 * 119.99893 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00426 * 180.25567 * 5 4 3 32 32 H 0.97000 * 119.99594 * 25.00426 * 9 7 6 33 33 H 0.97001 * 120.00098 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.46980 * 59.99436 * 20 7 6 35 35 H 1.09002 * 109.46655 * 300.00299 * 21 20 7 36 36 H 1.08997 * 109.47095 * 59.99987 * 21 20 7 37 37 H 1.08998 * 109.46630 * 180.02562 * 21 20 7 38 38 H 1.09005 * 109.47350 * 59.99730 * 22 20 7 39 39 H 1.08995 * 109.47058 * 179.97438 * 22 20 7 40 40 H 1.08997 * 109.47174 * 299.99761 * 22 20 7 41 41 H 1.07998 * 120.00145 * 180.02562 * 23 6 5 42 42 H 1.08000 * 119.99866 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7247 3.3753 -1.1972 6 6 2.9548 4.0271 0.0001 7 6 3.4571 5.4479 0.0001 8 1 3.9090 5.6735 0.9660 9 7 4.4576 5.6122 -1.0574 10 6 5.3925 6.5778 -0.9565 11 8 5.4052 7.3134 0.0128 12 6 6.3918 6.7422 -2.0134 13 1 6.4419 6.0310 -2.8245 14 6 7.2828 7.8219 -1.9726 15 7 7.3033 8.6132 -0.9330 16 14 8.4420 8.1308 -3.4045 17 1 7.8355 9.1238 -4.3270 18 1 9.7332 8.6554 -2.8918 19 1 8.6789 6.8585 -4.1328 20 6 2.2879 6.4022 -0.2513 21 6 2.7978 7.8448 -0.2507 22 6 1.6536 6.0856 -1.6072 23 6 2.7237 3.3757 1.1972 24 6 2.2629 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.0927 1.5599 -2.1324 31 1 2.9049 3.8844 -2.1325 32 1 4.4472 5.0260 -1.8302 33 1 7.9203 9.3612 -0.9049 34 1 1.5435 6.2800 0.5354 35 1 3.2494 8.0700 0.7155 36 1 3.5424 7.9673 -1.0372 37 1 1.9647 8.5246 -0.4294 38 1 1.2903 5.0579 -1.6072 39 1 0.8205 6.7652 -1.7861 40 1 2.3980 6.2078 -2.3939 41 1 2.9031 3.8849 2.1325 42 1 2.0826 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121547590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:32 Heat of formation + Delta-G solvation = -36.743232 kcal Electronic energy + Delta-G solvation = -21539.871269 eV Core-core repulsion = 18483.804194 eV Total energy + Delta-G solvation = -3056.067075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79545 -37.81351 -35.45153 -33.62971 -32.45174 -31.54946 -30.79706 -29.47092 -26.78145 -26.27928 -25.16001 -22.97195 -22.48639 -20.50951 -20.21690 -18.54692 -17.44933 -16.03058 -15.60331 -15.24135 -15.02952 -14.52595 -14.37006 -14.01205 -13.66462 -13.55697 -13.23245 -13.03465 -12.71966 -12.32597 -12.21497 -12.10165 -11.70881 -11.37808 -11.27492 -11.18025 -11.10259 -11.01208 -10.85257 -10.60995 -10.43590 -10.40401 -10.23942 -10.00538 -9.94630 -8.82329 -8.68932 -8.30435 -7.53889 -7.38858 -6.16570 -4.60358 1.52953 1.60149 3.14748 3.22448 3.25513 3.92199 4.13206 4.61793 4.74790 4.83359 4.90829 5.13754 5.18072 5.19949 5.27063 5.46230 5.51665 5.63553 5.65907 5.66674 5.75180 5.80466 5.91431 5.94284 6.03781 6.16558 6.21756 6.27103 6.29901 6.47754 6.52965 6.62265 6.66546 6.74446 6.75877 6.90775 7.03399 7.20994 7.41484 7.46312 7.96515 8.15509 8.36915 9.05773 9.57743 10.62767 10.82650 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.004383 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.255623 B = 6386.703540 C = 6821.090307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.074 4.074 7 C 0.195 3.805 8 H 0.082 0.918 9 N -0.756 5.756 10 C 0.559 3.441 11 O -0.573 6.573 12 C -0.547 4.547 13 H 0.065 0.935 14 C 0.090 3.910 15 N -0.767 5.767 16 Si 0.903 3.097 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.111 4.111 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.378 0.622 33 H 0.267 0.733 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 -12.784 0.007 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.137 4.137 5 C -0.124 4.124 6 C -0.074 4.074 7 C 0.089 3.911 8 H 0.100 0.900 9 N -0.411 5.411 10 C 0.363 3.637 11 O -0.456 6.456 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.395 5.395 16 Si 0.728 3.272 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.116 4.116 21 C -0.189 4.189 22 C -0.205 4.205 23 C -0.129 4.129 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.210 0.790 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.654 -12.060 0.829 16.791 hybrid contribution 0.573 -0.100 -1.097 1.242 sum -11.081 -12.160 -0.268 16.453 Atomic orbital electron populations 1.21745 0.95010 1.01326 1.02224 1.20499 0.95947 0.93032 1.02494 1.19791 1.00318 0.96047 0.93331 1.20951 1.00683 0.94867 0.97241 1.21041 0.98948 0.94374 0.98077 1.20230 0.97728 0.96352 0.93126 1.19492 0.88989 0.88094 0.94527 0.89976 1.46248 1.32919 1.38974 1.22998 1.18098 0.79931 0.78513 0.87206 1.90604 1.75271 1.45833 1.33869 1.20880 1.16461 1.11838 1.09268 0.91657 1.25652 0.96491 0.95119 0.95703 1.70018 1.30860 1.12178 1.26470 0.86427 0.79733 0.79153 0.81849 1.19882 1.20536 1.18972 1.21437 0.96471 0.96699 0.96979 1.21823 0.99545 0.93332 1.04226 1.21947 1.00027 1.00471 0.98012 1.21024 0.99567 0.94608 0.97742 1.20916 1.00640 0.94889 0.97234 0.92585 0.92626 0.92716 0.91353 0.91308 0.86527 0.85805 0.78971 0.92239 0.92391 0.92204 0.90809 0.95301 0.92874 0.93791 0.92136 0.86133 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.76 6.07 -27.88 -0.17 -0.93 16 3 C -0.09 -1.14 5.13 -104.63 -0.54 -1.68 16 4 C -0.12 -1.52 9.70 -39.59 -0.38 -1.90 16 5 C -0.11 -1.54 6.84 -39.58 -0.27 -1.81 16 6 C -0.07 -1.18 4.71 -104.63 -0.49 -1.67 16 7 C 0.20 3.73 2.28 -69.08 -0.16 3.58 16 8 H 0.08 1.78 7.44 -51.93 -0.39 1.40 16 9 N -0.76 -16.41 4.15 -56.34 -0.23 -16.65 16 10 C 0.56 15.21 6.10 -12.99 -0.08 15.13 16 11 O -0.57 -17.42 12.16 5.20 0.06 -17.36 16 12 C -0.55 -15.20 9.53 -35.63 -0.34 -15.54 16 13 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 14 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 15 N -0.77 -22.59 11.85 55.55 0.66 -21.93 16 16 Si 0.90 20.10 29.56 -169.99 -5.03 15.07 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 C -0.10 -1.71 2.79 -90.62 -0.25 -1.96 16 21 C -0.13 -2.75 7.72 37.16 0.29 -2.46 16 22 C -0.15 -2.33 7.95 37.16 0.30 -2.03 16 23 C -0.11 -1.62 9.67 -39.59 -0.38 -2.00 16 24 C -0.12 -1.50 9.70 -39.59 -0.38 -1.89 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.12 1.74 6.09 -52.49 -0.32 1.43 16 32 H 0.38 7.46 6.85 -40.82 -0.28 7.18 16 33 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.35 7.53 -51.93 -0.39 0.96 16 36 H 0.07 1.81 5.77 -51.93 -0.30 1.51 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.76 5.60 -51.93 -0.29 0.47 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.02 7.60 -51.93 -0.39 0.63 16 41 H 0.12 1.65 8.04 -52.49 -0.42 1.22 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -31.66 334.81 -8.64 -40.29 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.55 Total: 9.14 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.59 Total: -13.62 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.42 Total: -38.58 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.06 Total: -17.36 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.66 -8.64 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121547590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.550 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds